MELO3C024773 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C024773
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Concanavalin A-like lectin protein kinase family protein
Location	chr11 : 8066590 .. 8066772 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAAGGGACAAAAAGTGGATTTTAGGCCAAGCGCGATAAACGGGCTCTATGGTTTAGAAAGCAATGAAATGGGACATGCAATTTTCAAAAACCCATTAGAGCAAGACCTGGAAGACGCATTAAAAAGAGTAGCTTGGCCCGAGACAAAATGGGATAAAACACCTATAGGGAAGTACTAA

mRNA sequence

ATGGTGAAGGGACAAAAAGTGGATTTTAGGCCAAGCGCGATAAACGGGCTCTATGGTTTAGAAAGCAATGAAATGGGACATGCAATTTTCAAAAACCCATTAGAGCAAGACCTGGAAGACGCATTAAAAAGAGTAGCTTGGCCCGAGACAAAATGGGATAAAACACCTATAGGGAAGTACTAA

Coding sequence (CDS)

ATGGTGAAGGGACAAAAAGTGGATTTTAGGCCAAGCGCGATAAACGGGCTCTATGGTTTAGAAAGCAATGAAATGGGACATGCAATTTTCAAAAACCCATTAGAGCAAGACCTGGAAGACGCATTAAAAAGAGTAGCTTGGCCCGAGACAAAATGGGATAAAACACCTATAGGGAAGTACTAA

Protein sequence

MVKGQKVDFRPSAINGLYGLESNEMGHAIFKNPLEQDLEDALKRVAWPETKWDKTPIGKY*

Homology

[Close]

BLAST of MELO3C024773 vs. TrEMBL
Match: A0A0A0K4F2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G327740 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.2e-07
Identity = 27/60 (45.00%), Postives = 38/60 (63.33%), Query Frame = 1


Query: 1   MVKGQKVDFRPSAINGLYGLESNEMGHAIFKNPLEQDLEDALKRVAWPETKWDKTPIGKY 60
           +VK + V F    IN  YGL++NE+G  IFKN   +D++D LK + W +T+WD  P  KY
Sbjct: 115 VVKQEHVYFGLDDINAFYGLDTNEVGQVIFKNSTPKDMDDGLKTITWLKTEWDNKPTEKY 174

[Close]

BLAST of MELO3C024773 vs. TrEMBL
Match: A0A0A0L2P0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G569710 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 4.2e-06
Identity = 26/38 (68.42%), Postives = 28/38 (73.68%), Query Frame = 1


Query: 23 NEMGHAIFKNPLEQDLEDALKRVAWPETKWDKTPIGKY 61
          NE+GH I KNP  QDLE ALK+V WPET  D TP GKY
Sbjct: 3  NEIGHDILKNPRAQDLESALKKVVWPETMLDITPTGKY 40

[Close]

BLAST of MELO3C024773 vs. NCBI nr
Match: gi|700189302|gb|KGN44535.1| (hypothetical protein Csa_7G327740 [Cucumis sativus])

HSP 1 Score: 62.4 bits (150), Expect = 3.2e-07
Identity = 27/60 (45.00%), Postives = 38/60 (63.33%), Query Frame = 1


Query: 1   MVKGQKVDFRPSAINGLYGLESNEMGHAIFKNPLEQDLEDALKRVAWPETKWDKTPIGKY 60
           +VK + V F    IN  YGL++NE+G  IFKN   +D++D LK + W +T+WD  P  KY
Sbjct: 115 VVKQEHVYFGLDDINAFYGLDTNEVGQVIFKNSTPKDMDDGLKTITWLKTEWDNKPTEKY 174

[Close]

BLAST of MELO3C024773 vs. NCBI nr
Match: gi|659109371|ref|XP_008454680.1| (PREDICTED: uncharacterized protein LOC103495036 [Cucumis melo])

HSP 1 Score: 59.7 bits (143), Expect = 2.1e-06
Identity = 27/46 (58.70%), Postives = 36/46 (78.26%), Query Frame = 1


Query: 1   MVKGQKVDFRPSAINGLYGLESNEMGHAIFKNPLEQDLEDALKRVA 47
           +V G+KVDFRP  IN LYGLE N +GHAIFK  ++ + +DAL++VA
Sbjct: 140 IVNGKKVDFRPDEINALYGLEDNVIGHAIFKELMDLNKQDALEKVA 185

[Close]

BLAST of MELO3C024773 vs. NCBI nr
Match: gi|700199714|gb|KGN54872.1| (hypothetical protein Csa_4G569710 [Cucumis sativus])

HSP 1 Score: 58.2 bits (139), Expect = 6.0e-06
Identity = 26/38 (68.42%), Postives = 28/38 (73.68%), Query Frame = 1


Query: 23 NEMGHAIFKNPLEQDLEDALKRVAWPETKWDKTPIGKY 61
          NE+GH I KNP  QDLE ALK+V WPET  D TP GKY
Sbjct: 3  NEIGHDILKNPRAQDLESALKKVVWPETMLDITPTGKY 40

The following BLAST results are available for this feature:

BLAST of MELO3C024773 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K4F2_CUCSA	2.2e-07	45.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G327740 PE=4 SV=1	[more]
A0A0A0L2P0_CUCSA	4.2e-06	68.42	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G569710 PE=4 SV=1	[more]

BLAST of MELO3C024773 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700189302\|gb\|KGN44535.1\|	3.2e-07	45.00	hypothetical protein Csa_7G327740 [Cucumis sativus]	[more]
gi\|659109371\|ref\|XP_008454680.1\|	2.1e-06	58.70	PREDICTED: uncharacterized protein LOC103495036 [Cucumis melo]	[more]
gi\|700199714\|gb\|KGN54872.1\|	6.0e-06	68.42	hypothetical protein Csa_4G569710 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C024773T1	MELO3C024773T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C024773	Cucumber (Gy14) v2	cgybmeB083
MELO3C024773	Silver-seed gourd	carmeB0935
MELO3C024773	Cucumber (Chinese Long) v3	cucmeB103
MELO3C024773	Watermelon (97103) v2	mewmbB092
MELO3C024773	Wax gourd	mewgoB126
MELO3C024773	Cucumber (Gy14) v1	cgymeB072
MELO3C024773	Cucurbita maxima (Rimu)	cmameB493
MELO3C024773	Cucurbita maxima (Rimu)	cmameB534
MELO3C024773	Cucurbita moschata (Rifu)	cmomeB483
MELO3C024773	Cucurbita moschata (Rifu)	cmomeB524
MELO3C024773	Wild cucumber (PI 183967)	cpimeB096
MELO3C024773	Cucumber (Chinese Long) v2	cumeB087
MELO3C024773	Watermelon (Charleston Gray)	mewcgB090
MELO3C024773	Watermelon (97103) v1	mewmB125
MELO3C024773	Cucurbita pepo (Zucchini)	cpemeB260
MELO3C024773	Cucurbita pepo (Zucchini)	cpemeB672
MELO3C024773	Bottle gourd (USVL1VR-Ls)	lsimeB053