MELO3C024768 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C024768
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Collagen alpha-1(XXVII) chain A
Location	chr11 : 7943216 .. 7944637 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACCGCCTTCTGGCCGGCAACGGCCACCAAACCAGCGGCAACCGCCGCAAAACAGTCAAAACAGTAGTCCACAGAGACCACCTCAATCAGTAGCTTCCTCCTCAAAAACTACTCCTTTTAGGAAAAAATCCCCAACTCAATCATCTGTACCGTCACCTATGAGTGCAAAAAACTACGCCATGGATTTGCAATTTGAGCAAGTATCCAGGCTACGTCAAGGTTCTGCTCAAAGAACATTGACCGTTCAATCAGACTCTTCGAGTCTTCCTCCAATTCCTTCAACAGCATTGTTGCGTCCCTCTAGACCAACAACTCCAAATAAGCGTGCCGCTTCCCCGGTCGCTTCCTCCTCAAGGTCTGCAATAACGAGGAATCCTTCCTCGTATTCTCAAATCGTTAGGCCAAAGGTTTTCCAACCTAGACCTCCAATCAATGGTTATTTCACCAAAACCACTATGGTTGATCTAACCATAGAACCAGAGTTCGATGGACCTTCTGTCCAAGAAGTCTGTAGTCAAATATTTCCTCATAGGTTCAATTTCTTATCTGAGGATCTTTCAAAAACTAGGACTTTCTACGAGTACATTTTAGTTGACTCCAAATCAGCCGAAATTACTCATGTCCCAAATAAAAATGATCCCTCCAAGATCATTTATTCAAAGTTGAGAATTTTTCTTATTCTCACCCCATCTTACTGGAAACAAGGGATGTTTGTGGGAAGAAAATTCTCTCACCCTTTCAAACCACACTCATACAATTATCGTGACTATACAAAGGCATGGTATATTATATTTTGGCTCCAAGCTTACAACCATTCTTGGTTTGTGACATTTTGCAAGCAAGCTTACAAAATGCACTTCCCAAACTGGTTTCAAAATTGGTGGATGTATTTTGGACTCTCCGAAGAAATATTTCCGGTAAAAGTTCAACGTTCGTACCACCTTTTCCAACAAAGTATCTATTCATCACCTCTTTCAAAGACGTTTAGGTTTGCTTTGTATTTCCAAATTCCCTGGATCTTTTGCTGGAATTTCCAGCTAGGACCTTCAGGAAACTTCAAAGCCCTAAGTAATTCCCTCAGGATCAAATGGTGGAAAAAATTCAATTACTCCCATCTCGAAGTCAACAAGATCAAGGATTGGTTTAAAGCCAATATCCATCTCCAAGATATGACTAGGCAAGAGGACGAAGCCTTTCTCCTCACCAAAAACGCAGTCATGTCAACCCTTGCCGGAGCAAGCACTCAACAGGAGTTCAATTCTGTTGTCAATAACGTCGTTGTGAACCTTTCAGACGATAATGACGATCTACCAGAGGACGCTTCCCCAGCCTCCGTTAATGATGTCGATGATCTTGACTATAACCCATACGAAGGCCTCGACATCAACGACCCATTTTTGGACAAACAACCGTATTAG

mRNA sequence

ATGGAACCGCCTTCTGGCCGGCAACGGCCACCAAACCAGCGGCAACCGCCGCAAAACAGTCAAAACAGTAGTCCACAGAGACCACCTCAATCAGTAGCTTCCTCCTCAAAAACTACTCCTTTTAGGAAAAAATCCCCAACTCAATCATCTGTACCGTCACCTATGAGTGCAAAAAACTACGCCATGGATTTGCAATTTGAGCAAGTATCCAGGCTACGTCAAGGTTCTGCTCAAAGAACATTGACCGTTCAATCAGACTCTTCGAGTCTTCCTCCAATTCCTTCAACAGCATTGTTGCGTCCCTCTAGACCAACAACTCCAAATAAGCGTGCCGCTTCCCCGGTCGCTTCCTCCTCAAGGTCTGCAATAACGAGGAATCCTTCCTCGTATTCTCAAATCGTTAGGCCAAAGGTTTTCCAACCTAGACCTCCAATCAATGGTTATTTCACCAAAACCACTATGGTTGATCTAACCATAGAACCAGAGTTCGATGGACCTTCTGTCCAAGAAGTCTGTAGTCAAATATTTCCTCATAGGTTCAATTTCTTATCTGAGGATCTTTCAAAAACTAGGACTTTCTACGAGTACATTTTAGTTGACTCCAAATCAGCCGAAATTACTCATGTCCCAAATAAAAATGATCCCTCCAAGATCATTTATTCAAAGTTGAGAATTTTTCTTATTCTCACCCCATCTTACTGGAAACAAGGGATGTTTGTGGGAAGAAAATTCTCTCACCCTTTCAAACCACACTCATACAATTATCGTGACTATACAAAGGCATGGTATATTATATTTTGGCTCCAAGCTTACAACCATTCTTGGTTTGTGACATTTTGCAAGCAAGCTTACAAAATGCACTTCCCAAACTGGTTTCAAAATTGGTGGATGTATTTTGGACTCTCCGAAGAAATATTTCCGGTAAAAGTTCAACGTTCGTACCACCTTTTCCAACAAAGTATCTATTCATCACCTCTTTCAAAGACGTTTAGGTTTGCTTTGTATTTCCAAATTCCCTGGATCTTTTGCTGGAATTTCCAGCTAGGACCTTCAGGAAACTTCAAAGCCCTAAGTAATTCCCTCAGGATCAAATGGTGGAAAAAATTCAATTACTCCCATCTCGAAGTCAACAAGATCAAGGATTGGTTTAAAGCCAATATCCATCTCCAAGATATGACTAGGCAAGAGGACGAAGCCTTTCTCCTCACCAAAAACGCAGTCATGTCAACCCTTGCCGGAGCAAGCACTCAACAGGAGTTCAATTCTGTTGTCAATAACGTCGTTGTGAACCTTTCAGACGATAATGACGATCTACCAGAGGACGCTTCCCCAGCCTCCGTTAATGATGTCGATGATCTTGACTATAACCCATACGAAGGCCTCGACATCAACGACCCATTTTTGGACAAACAACCGTATTAG

Coding sequence (CDS)

ATGGAACCGCCTTCTGGCCGGCAACGGCCACCAAACCAGCGGCAACCGCCGCAAAACAGTCAAAACAGTAGTCCACAGAGACCACCTCAATCAGTAGCTTCCTCCTCAAAAACTACTCCTTTTAGGAAAAAATCCCCAACTCAATCATCTGTACCGTCACCTATGAGTGCAAAAAACTACGCCATGGATTTGCAATTTGAGCAAGTATCCAGGCTACGTCAAGGTTCTGCTCAAAGAACATTGACCGTTCAATCAGACTCTTCGAGTCTTCCTCCAATTCCTTCAACAGCATTGTTGCGTCCCTCTAGACCAACAACTCCAAATAAGCGTGCCGCTTCCCCGGTCGCTTCCTCCTCAAGGTCTGCAATAACGAGGAATCCTTCCTCGTATTCTCAAATCGTTAGGCCAAAGGTTTTCCAACCTAGACCTCCAATCAATGGTTATTTCACCAAAACCACTATGGTTGATCTAACCATAGAACCAGAGTTCGATGGACCTTCTGTCCAAGAAGTCTGTAGTCAAATATTTCCTCATAGGTTCAATTTCTTATCTGAGGATCTTTCAAAAACTAGGACTTTCTACGAGTACATTTTAGTTGACTCCAAATCAGCCGAAATTACTCATGTCCCAAATAAAAATGATCCCTCCAAGATCATTTATTCAAAGTTGAGAATTTTTCTTATTCTCACCCCATCTTACTGGAAACAAGGGATGTTTGTGGGAAGAAAATTCTCTCACCCTTTCAAACCACACTCATACAATTATCGTGACTATACAAAGGCATGGTATATTATATTTTGGCTCCAAGCTTACAACCATTCTTGGTTTGTGACATTTTGCAAGCAAGCTTACAAAATGCACTTCCCAAACTGGTTTCAAAATTGGTGGATGTATTTTGGACTCTCCGAAGAAATATTTCCGGTAAAAGTTCAACGTTCGTACCACCTTTTCCAACAAAGTATCTATTCATCACCTCTTTCAAAGACGTTTAGGTTTGCTTTGTATTTCCAAATTCCCTGGATCTTTTGCTGGAATTTCCAGCTAGGACCTTCAGGAAACTTCAAAGCCCTAAGTAATTCCCTCAGGATCAAATGGTGGAAAAAATTCAATTACTCCCATCTCGAAGTCAACAAGATCAAGGATTGGTTTAAAGCCAATATCCATCTCCAAGATATGACTAGGCAAGAGGACGAAGCCTTTCTCCTCACCAAAAACGCAGTCATGTCAACCCTTGCCGGAGCAAGCACTCAACAGGAGTTCAATTCTGTTGTCAATAACGTCGTTGTGAACCTTTCAGACGATAATGACGATCTACCAGAGGACGCTTCCCCAGCCTCCGTTAATGATGTCGATGATCTTGACTATAACCCATACGAAGGCCTCGACATCAACGACCCATTTTTGGACAAACAACCGTATTAG

Protein sequence

MEPPSGRQRPPNQRQPPQNSQNSSPQRPPQSVASSSKTTPFRKKSPTQSSVPSPMSAKNYAMDLQFEQVSRLRQGSAQRTLTVQSDSSSLPPIPSTALLRPSRPTTPNKRAASPVASSSRSAITRNPSSYSQIVRPKVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHRFNFLSEDLSKTRTFYEYILVDSKSAEITHVPNKNDPSKIIYSKLRIFLILTPSYWKQGMFVGRKFSHPFKPHSYNYRDYTKAWYIIFWLQAYNHSWFVTFCKQAYKMHFPNWFQNWWMYFGLSEEIFPVKVQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSGNFKALSNSLRIKWWKKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTLAGASTQQEFNSVVNNVVVNLSDDNDDLPEDASPASVNDVDDLDYNPYEGLDINDPFLDKQPY*

Homology

[Close]

BLAST of MELO3C024768 vs. TrEMBL
Match: A0A0A0LUE7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G434180 PE=4 SV=1)

HSP 1 Score: 354.8 bits (909), Expect = 1.7e-94
Identity = 163/186 (87.63%), Postives = 173/186 (93.01%), Query Frame = 1


Query: 154 MVDLTIEPEFDGPSVQEVCSQIFPHRFNFLSEDLSKTRTFYEYILVDSKSAEITHVPNKN 213
           MVDLTIEPEFD PSV E+C QIFPH FNFL EDL+KT+TFYE+ILVDSKSAEITHVP KN
Sbjct: 1   MVDLTIEPEFDRPSVFELCKQIFPHGFNFLPEDLAKTKTFYEFILVDSKSAEITHVPYKN 60

Query: 214 DPSKIIYSKLRIFLILTPSYWKQGMFVGRKFSHPFKPHSYNYRDYTKAWYIIFWLQAYNH 273
           DP KIIYSKLRIF +LTPSYWKQGMFVG++FS PFK  SYNYRDYTKAWYI+FWLQA+NH
Sbjct: 61  DPLKIIYSKLRIFRVLTPSYWKQGMFVGKRFSQPFKSPSYNYRDYTKAWYIVFWLQAHNH 120

Query: 274 SWFVTFCKQAYKMHFPNWFQNWWMYFGLSEEIFPVKVQRSYHLFQQSIYSSPLSKTFRFA 333
           SWFVTFCKQAYKMHFP WFQNWWMYFGLSEEIF V+VQRSYHLFQQSIYSSPLSKTFRFA
Sbjct: 121 SWFVTFCKQAYKMHFPQWFQNWWMYFGLSEEIFLVEVQRSYHLFQQSIYSSPLSKTFRFA 180

Query: 334 LYFQIP 340
           LYFQIP
Sbjct: 181 LYFQIP 186

[Close]

BLAST of MELO3C024768 vs. TrEMBL
Match: A0A0A0LWK6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G385050 PE=4 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 1.9e-58
Identity = 108/121 (89.26%), Postives = 114/121 (94.21%), Query Frame = 1


Query: 154 MVDLTIEPEFDGPSVQEVCSQIFPHRFNFLSEDLSKTRTFYEYILVDSKSAEITHVPNKN 213
           MVDLTIEPEFDGPSV EVC Q+FPH FNFL EDLSKTRTFYE+ILVDSKSAEITHVP+KN
Sbjct: 1   MVDLTIEPEFDGPSVPEVCKQVFPHGFNFLPEDLSKTRTFYEFILVDSKSAEITHVPDKN 60

Query: 214 DPSKIIYSKLRIFLILTPSYWKQGMFVGRKFSHPFKPHSYNYRDYTKAWYIIFWLQAYNH 273
           DPSKIIYSKLRIF +LTPSYWKQGMFVG++FS PFKP SYNYRDYTKAWYIIFWLQAYNH
Sbjct: 61  DPSKIIYSKLRIFQVLTPSYWKQGMFVGKRFSQPFKPPSYNYRDYTKAWYIIFWLQAYNH 120

Query: 274 S 275
           S
Sbjct: 121 S 121

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BLAST of MELO3C024768 vs. TrEMBL
Match: A5BG67_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010890 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 1.3e-51
Identity = 131/386 (33.94%), Postives = 199/386 (51.55%), Query Frame = 1


Query: 87  SSSLPPI-PSTALLRPSRPTTPN---KRAASPVASSSRSAITRNPS---SYSQIVR-PKV 146
           S   PP+ PS + ++ S+ +  N   +  +SP   S+  + +++PS   SYSQ V+ PK 
Sbjct: 36  SPDFPPLQPSKSFIQASKSSPKNIVVQSQSSPNTISTLPSPSQSPSPSYSYSQYVKKPK- 95

Query: 147 FQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHRFNFLSEDLSKTRTFYEYIL 206
                         T+    IEPEF+   + ++   IFP   NF S D  KTR FYE+IL
Sbjct: 96  --------------TLEIAFIEPEFNFEEIPKILPYIFPQGVNFNSNDPLKTRQFYEFIL 155

Query: 207 VDSKSAEITHVPNKNDPSKIIYSKLRIFLILTPSYWKQGMFVGRKFSHPFKPHSYNYRDY 266
           VD+ S EITH  +KN+P  I +SK +I  ++T + W Q  F  + FS PF P SYNY DY
Sbjct: 156 VDTDSVEITHNTDKNNPQXIAFSKCQILRVMTIADWNQKPFTCKAFSQPFHPMSYNYIDY 215

Query: 267 TKAWYIIFWLQAYNHSWFVTFCKQAYKMHFPNWFQNWWMYFGLSEEIFPVKVQRSYHLFQ 326
             AWY +F+LQ+Y HSWF+ F +      FP WFQ WW +FGL + IFP ++Q  ++ ++
Sbjct: 216 MNAWYNMFYLQSYQHSWFIQFSRSC-NTKFPAWFQKWWTFFGLLDSIFPPEIQEKFNFYK 275

Query: 327 QSIYSSPLS--KTFRFALYFQIPWIFCWNF---QLGPSGNFKALSNSLRIKWWKKFNYSH 386
               S  ++  +   F    +IPWI  WN    Q  P     +LS    IKWW KFN+  
Sbjct: 276 SKTSSQNINQPRLLTFCSRLRIPWILTWNIIKKQEQPLPFPLSLSREFSIKWWDKFNHDF 335

Query: 387 LEVNKIKDWFK---ANIHLQDMTRQE----DEAFLLTKNAVMSTLAGASTQQEFNSVVNN 446
           +   K+        ++ + +D T        E FL  K+   ++LA A+  +++   +  
Sbjct: 336 VCQQKVLQLISTRPSSSNSKDSTSSSQGPTQEEFLTLKSKCQASLAAATDLEQYRQGLIQ 395

Query: 447 VVVNLSD-DNDDLPEDASPASVNDVD 452
            +    D +N++  EDA  +  + VD
Sbjct: 396 TLKKFGDQENEETTEDAVLSDDSYVD 405

[Close]

BLAST of MELO3C024768 vs. TrEMBL
Match: F6H9U7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0085g00640 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 3.0e-51
Identity = 140/431 (32.48%), Postives = 208/431 (48.26%), Query Frame = 1


Query: 39  TPFRKKSPTQSSVPSPMSAKNYAMDLQFEQVSRLRQGSAQRTLTVQSDSSSLPPI-PSTA 98
           TP R + P+ S      +  +YAM   F  VS       Q + + Q  S   PP+ PS +
Sbjct: 3   TPVRPQLPSSSK----KTKASYAMISNFSNVSPTFP--LQTSNSFQVLSPDFPPLQPSKS 62

Query: 99  LLRPSRP----------TTPNKRAASPVASSSRSAITRNPSSYSQIVR-PKVFQPRPPIN 158
            ++ S+           ++P+  +  P  S S S      SSYSQ V+ PK         
Sbjct: 63  FIQASKSNPKNILIQGHSSPSTISTLPSPSQSPSQSPSPSSSYSQYVKKPK--------- 122

Query: 159 GYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHRFNFLSEDLSKTRTFYEYILVDSKSAEI 218
                 T+    IEPEF+   + ++   IFP   NF S D  KTR FYE+IL D+ S EI
Sbjct: 123 ------TLEIAFIEPEFNFEEIPKILPYIFPPGVNFNSNDPLKTRQFYEFILADTDSVEI 182

Query: 219 THVPNKNDPSKIIYSKLRIFLILTPSYWKQGMFVGRKFSHPFKPHSYNYRDYTKAWYIIF 278
           TH  +KN+P +I +SK +I  ++T + W Q  F  + FS PF P SYNY DY  AWY +F
Sbjct: 183 THNTDKNNPQRIAFSKCQILRVMTIADWNQKPFTCKAFSQPFHPMSYNYLDYMDAWYNMF 242

Query: 279 WLQAYNHSWFVTFCKQAYKMHFPNWFQNWWMYFGLSEEIFPVKVQRSYHLFQQSIYSSPL 338
           +LQ+Y HSWF+ F +      FP WFQ WW +FGL + IFP  +Q  ++ ++    S  +
Sbjct: 243 YLQSYQHSWFIQFSRNC-NTKFPAWFQKWWTFFGLLDSIFPPDIQEKFNFYKSKTSSQNI 302

Query: 339 S--KTFRFALYFQIPWIFCWNF---QLGPSGNFKALSNSLRIKWWKKFNYSHLEVNKIKD 398
           +  +   F    +IPWI  WN    Q  P     +LS    IKWW KFN+  +   K+  
Sbjct: 303 TQPRLLTFCSRLRIPWILTWNIIKKQEQPLYFPLSLSREFNIKWWDKFNHDFVCQQKVLQ 362

Query: 399 WFKA---NIHLQDMTRQE----DEAFLLTKNAVMSTLAGASTQQEFNSVVNNVVVNLSD- 444
              +   + + +D +R       E FL  K    ++LA A+  +++   +   +    D 
Sbjct: 363 LISSRPGSSNSKDSSRSSQGPTQEEFLTLKRKCQASLAAATDLEQYRQGLIQTLKEFGDH 411

[Close]

BLAST of MELO3C024768 vs. TrEMBL
Match: F6GZH2_VITVI (Putative uncharacterized protein (Fragment) OS=Vitis vinifera GN=VIT_00s2213g00010 PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 1.9e-50
Identity = 115/315 (36.51%), Postives = 169/315 (53.65%), Query Frame = 1


Query: 159 IEPEFDGPSVQEVCSQIFPHRFNFLSEDLSKTRTFYEYILVDSKSAEITHVPNKNDPSKI 218
           IEPEF+   + ++   IFP   NF S D  KTR FYE+ILVD+ S EITH  +KN+P +I
Sbjct: 4   IEPEFNFEEIPKILPYIFPQGVNFNSNDPLKTRQFYEFILVDTDSVEITHNTDKNNPQRI 63

Query: 219 IYSKLRIFLILTPSYWKQGMFVGRKFSHPFKPHSYNYRDYTKAWYIIFWLQAYNHSWFVT 278
            +SK +I  ++T + W Q  F  + FS PF P SYNY DY  AWY +F+LQ+Y HSWF+ 
Sbjct: 64  AFSKCQILRVMTIADWNQKPFTCKAFSQPFHPMSYNYMDYMDAWYNMFYLQSYQHSWFIQ 123

Query: 279 FCKQAYKMHFPNWFQNWWMYFGLSEEIFPVKVQRSYHLFQQSIYSSPLS--KTFRFALYF 338
           F +      FP WFQ WW +FGL + IFP  +Q  ++ ++    S  ++  +   F    
Sbjct: 124 FSRNC-NTKFPAWFQKWWTFFGLLDSIFPTDIQEKFNFYKSKTSSQNINQPRLLTFCSRL 183

Query: 339 QIPWIFCWNF---QLGPSGNFKALSNSLRIKWWKKFNYSHLEVNKIKDWFK---ANIHLQ 398
           +IPWI  WN    Q  P     +LS    IKWW KFN+  +   K+        ++ + +
Sbjct: 184 RIPWILTWNIIKKQEQPLPFPLSLSREFSIKWWDKFNHDFVCQQKVLQLISTRPSSSNSK 243

Query: 399 DMT----RQEDEAFLLTKNAVMSTLAGASTQQEFNSVVNNVVVNLSD-DNDDLPEDASPA 458
           D T    R   E FL  K+   ++LA A+  +++   +   +    D +N++  EDA   
Sbjct: 244 DSTSSSQRPTQEEFLTLKSKCQASLAAATDLEQYRQGLIQTLKKFGDQENEETTEDA-VL 303

Query: 459 SVNDVDDLDYNPYEG 461
           S +   DL++  Y G
Sbjct: 304 SDDSYVDLEFILYGG 316

[Close]

BLAST of MELO3C024768 vs. NCBI nr
Match: gi|700210424|gb|KGN65520.1| (hypothetical protein Csa_1G434180 [Cucumis sativus])

HSP 1 Score: 354.8 bits (909), Expect = 2.4e-94
Identity = 163/186 (87.63%), Postives = 173/186 (93.01%), Query Frame = 1


Query: 154 MVDLTIEPEFDGPSVQEVCSQIFPHRFNFLSEDLSKTRTFYEYILVDSKSAEITHVPNKN 213
           MVDLTIEPEFD PSV E+C QIFPH FNFL EDL+KT+TFYE+ILVDSKSAEITHVP KN
Sbjct: 1   MVDLTIEPEFDRPSVFELCKQIFPHGFNFLPEDLAKTKTFYEFILVDSKSAEITHVPYKN 60

Query: 214 DPSKIIYSKLRIFLILTPSYWKQGMFVGRKFSHPFKPHSYNYRDYTKAWYIIFWLQAYNH 273
           DP KIIYSKLRIF +LTPSYWKQGMFVG++FS PFK  SYNYRDYTKAWYI+FWLQA+NH
Sbjct: 61  DPLKIIYSKLRIFRVLTPSYWKQGMFVGKRFSQPFKSPSYNYRDYTKAWYIVFWLQAHNH 120

Query: 274 SWFVTFCKQAYKMHFPNWFQNWWMYFGLSEEIFPVKVQRSYHLFQQSIYSSPLSKTFRFA 333
           SWFVTFCKQAYKMHFP WFQNWWMYFGLSEEIF V+VQRSYHLFQQSIYSSPLSKTFRFA
Sbjct: 121 SWFVTFCKQAYKMHFPQWFQNWWMYFGLSEEIFLVEVQRSYHLFQQSIYSSPLSKTFRFA 180

Query: 334 LYFQIP 340
           LYFQIP
Sbjct: 181 LYFQIP 186

[Close]

BLAST of MELO3C024768 vs. NCBI nr
Match: gi|700210273|gb|KGN65369.1| (hypothetical protein Csa_1G385050 [Cucumis sativus])

HSP 1 Score: 235.0 bits (598), Expect = 2.8e-58
Identity = 108/121 (89.26%), Postives = 114/121 (94.21%), Query Frame = 1


Query: 154 MVDLTIEPEFDGPSVQEVCSQIFPHRFNFLSEDLSKTRTFYEYILVDSKSAEITHVPNKN 213
           MVDLTIEPEFDGPSV EVC Q+FPH FNFL EDLSKTRTFYE+ILVDSKSAEITHVP+KN
Sbjct: 1   MVDLTIEPEFDGPSVPEVCKQVFPHGFNFLPEDLSKTRTFYEFILVDSKSAEITHVPDKN 60

Query: 214 DPSKIIYSKLRIFLILTPSYWKQGMFVGRKFSHPFKPHSYNYRDYTKAWYIIFWLQAYNH 273
           DPSKIIYSKLRIF +LTPSYWKQGMFVG++FS PFKP SYNYRDYTKAWYIIFWLQAYNH
Sbjct: 61  DPSKIIYSKLRIFQVLTPSYWKQGMFVGKRFSQPFKPPSYNYRDYTKAWYIIFWLQAYNH 120

Query: 274 S 275
           S
Sbjct: 121 S 121

[Close]

BLAST of MELO3C024768 vs. NCBI nr
Match: gi|147863969|emb|CAN83211.1| (hypothetical protein VITISV_010890 [Vitis vinifera])

HSP 1 Score: 212.2 bits (539), Expect = 1.9e-51
Identity = 131/386 (33.94%), Postives = 199/386 (51.55%), Query Frame = 1


Query: 87  SSSLPPI-PSTALLRPSRPTTPN---KRAASPVASSSRSAITRNPS---SYSQIVR-PKV 146
           S   PP+ PS + ++ S+ +  N   +  +SP   S+  + +++PS   SYSQ V+ PK 
Sbjct: 36  SPDFPPLQPSKSFIQASKSSPKNIVVQSQSSPNTISTLPSPSQSPSPSYSYSQYVKKPK- 95

Query: 147 FQPRPPINGYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHRFNFLSEDLSKTRTFYEYIL 206
                         T+    IEPEF+   + ++   IFP   NF S D  KTR FYE+IL
Sbjct: 96  --------------TLEIAFIEPEFNFEEIPKILPYIFPQGVNFNSNDPLKTRQFYEFIL 155

Query: 207 VDSKSAEITHVPNKNDPSKIIYSKLRIFLILTPSYWKQGMFVGRKFSHPFKPHSYNYRDY 266
           VD+ S EITH  +KN+P  I +SK +I  ++T + W Q  F  + FS PF P SYNY DY
Sbjct: 156 VDTDSVEITHNTDKNNPQXIAFSKCQILRVMTIADWNQKPFTCKAFSQPFHPMSYNYIDY 215

Query: 267 TKAWYIIFWLQAYNHSWFVTFCKQAYKMHFPNWFQNWWMYFGLSEEIFPVKVQRSYHLFQ 326
             AWY +F+LQ+Y HSWF+ F +      FP WFQ WW +FGL + IFP ++Q  ++ ++
Sbjct: 216 MNAWYNMFYLQSYQHSWFIQFSRSC-NTKFPAWFQKWWTFFGLLDSIFPPEIQEKFNFYK 275

Query: 327 QSIYSSPLS--KTFRFALYFQIPWIFCWNF---QLGPSGNFKALSNSLRIKWWKKFNYSH 386
               S  ++  +   F    +IPWI  WN    Q  P     +LS    IKWW KFN+  
Sbjct: 276 SKTSSQNINQPRLLTFCSRLRIPWILTWNIIKKQEQPLPFPLSLSREFSIKWWDKFNHDF 335

Query: 387 LEVNKIKDWFK---ANIHLQDMTRQE----DEAFLLTKNAVMSTLAGASTQQEFNSVVNN 446
           +   K+        ++ + +D T        E FL  K+   ++LA A+  +++   +  
Sbjct: 336 VCQQKVLQLISTRPSSSNSKDSTSSSQGPTQEEFLTLKSKCQASLAAATDLEQYRQGLIQ 395

Query: 447 VVVNLSD-DNDDLPEDASPASVNDVD 452
            +    D +N++  EDA  +  + VD
Sbjct: 396 TLKKFGDQENEETTEDAVLSDDSYVD 405

[Close]

BLAST of MELO3C024768 vs. NCBI nr
Match: gi|147806086|emb|CAN63337.1| (hypothetical protein VITISV_033711 [Vitis vinifera])

HSP 1 Score: 199.1 bits (505), Expect = 1.7e-47
Identity = 132/406 (32.51%), Postives = 201/406 (49.51%), Query Frame = 1


Query: 39  TPFRKKSPTQSSVPSPMSAKNYAMDLQFEQVSRLRQGSAQRTLTVQSDSSSLPPI-PSTA 98
           TP R + P+ S      +  +YAM  +F  V        Q + + Q  S   PP+ PS +
Sbjct: 3   TPIRPQLPSSSK----KTKASYAMISKFSNVRPTFP--LQTSNSFQVLSPDFPPLQPSKS 62

Query: 99  LLRPSRPTTPN---KRAASPVASSSRSAITRNPS-------SYSQIVR-PKVFQPRPPIN 158
            ++ S+ +  N   +  +SP   S+  + +++PS       S+SQ V+ PK         
Sbjct: 63  FIQVSKSSPKNIIVQSQSSPNTISTLPSPSQSPSQSPFLSYSFSQYVKKPK--------- 122

Query: 159 GYFTKTTMVDLTIEPEFDGPSVQEVCSQIFPHRFNFLSEDLSKTRTFYEYILVDSKSAEI 218
                 T+    IEPEF    + ++   IFP   NF S D  KTR FYE+ILVD+ S EI
Sbjct: 123 ------TLEIAFIEPEFSFEEIPKILPYIFPQGVNFNSNDPLKTRQFYEFILVDTDSVEI 182

Query: 219 THVPNKNDPSKIIYSKLRIFLILTPSYWKQGMFVGRKFSHPFKPHSYNYRDYTKAWYIIF 278
           TH  +KN+P +I +SK +I  ++T + W    F  + FS PF P SYNY DY  AWY +F
Sbjct: 183 THNTDKNNPQRIAFSKCQILXVMTIADWNXKPFTCKAFSQPFHPMSYNYIDYIDAWYNMF 242

Query: 279 WLQAYNHSWFVTFCKQAYKMHFPNWFQNWWMYFGLSEEIFPVKVQRSYHLFQQSIYSSPL 338
           +LQ+Y HSWF+ F +      F  WF+ WW +FGL + IFP  +Q  ++ ++    S  +
Sbjct: 243 YLQSYQHSWFIQFSRN-XNTKFXAWFKKWWTFFGLLDSIFPPDIQEKFNFYKSKTSSQNI 302

Query: 339 S--KTFRFALYFQIPWIFCWNF---QLGPSGNFKALSNSLRIKWWKKFNYSHLEVNKIKD 398
           +  +   F    +IPWIF WN    Q  P     +LS    IKW  KFN+  +   K+  
Sbjct: 303 TQPRLLTFCSRLRIPWIFXWNIIKKQEQPLPFPLSLSREFNIKWXDKFNHDFVCQQKVLQ 362

Query: 399 WFK---ANIHLQDMTRQE----DEAFLLTKNAVMSTLAGASTQQEF 421
                  + + +D +R       E FL  K+   ++LA A+  +++
Sbjct: 363 LISTRPGSSNSKDSSRSSQGPTQEEFLTLKSKCQASLAAATDLEQY 386

[Close]

BLAST of MELO3C024768 vs. NCBI nr
Match: gi|1012345526|gb|KYP56718.1| (Enzymatic polyprotein, partial [Cajanus cajan])

HSP 1 Score: 191.4 bits (485), Expect = 3.5e-45
Identity = 135/442 (30.54%), Postives = 203/442 (45.93%), Query Frame = 1


Query: 43  KKSPTQSSVPSPMSAKNYAMDLQFEQVSRLRQGSAQRTLTVQSDSSSLPPIPSTALLRPS 102
           K S      P      N     Q E   +L   S+      QS  + LP   +T L   +
Sbjct: 384 KSSKDNYGTPFKAPLSNTVKSAQSEASRQLSASSSSSRKLPQSFDTKLPSKSTTFLEAAT 443

Query: 103 RPTTPNKRAASPVAS-----------SSRSAITRNPS---SYSQIVRPKVFQPRPPINGY 162
                      P+A+           SS   I++N S   +++ I        R   + Y
Sbjct: 444 NSPLLFHNKFDPIAALGHAPEPSSIPSSSKQISQNLSKNITHNTIPATTPSNSRSYDDSY 503

Query: 163 FTKTTMVDLT-IEPEFDGPSVQEVCSQIFP---HRFNFLSEDLSKTRTFYEYILVDSKSA 222
            TK T +D+  IEPE+   +  ++ + IFP   H  NFL     K R FYE+ILVDS S 
Sbjct: 504 ITKDTYIDIMPIEPEWKDLTRDQLINTIFPKDSHHQNFL-----KPRIFYEFILVDSDSI 563

Query: 223 EITHVPNKNDPSKIIYSKLRIFLILTPSYWKQGMFVGRKFSHPFKPHSYNYRDYTKAWYI 282
           E+ H  +K++   IIYSK +I  I+TP  W Q +   + FS  F P +Y Y DYT AW  
Sbjct: 564 ELFHSRDKDN--NIIYSKAKILKIMTPEEWGQPIHQPKSFSRQFHPQTYTYYDYTMAWTY 623

Query: 283 IFWLQAYNHSWFVTFCKQAYKMHFPNWFQNWWMYFGLSEEIFPVKVQRSYHLFQQSIYSS 342
           + +LQ   HSWF  F ++   + FP WF  W+  +G   E+FP +V  +Y  F++     
Sbjct: 624 MLYLQPKTHSWFFWF-RRGISLKFPKWFLQWFYTWGPIRELFPQEVSENYDYFKEVTTFL 683

Query: 343 PLSKTFRFALYFQIPWIFCWNFQL-GPSGN--FKALSNSLRIKWWKKFNYSHLEVNKIKD 402
           P  K   F     I WI  W++    P  N   K LS  ++IKWWKKF+ + +  ++IK+
Sbjct: 684 PNYKMITFVASQNITWIVTWDYIFRQPYDNIPLKILSRCIKIKWWKKFDMNLISKSRIKE 743

Query: 403 WFKAN----IHLQDMTRQ-EDEAFLLTKNAVMSTLAGASTQQEFNSVVNNVVVNLSDDND 459
           W + N    +H ++  R  +D  FL  K+ +M+ LA A +Q+EF + +  +         
Sbjct: 744 WAQGNSPAILHQKNKKRNTKDSQFLAEKSKIMAELASACSQEEFEARLQLIRAE------ 803

The following BLAST results are available for this feature:

BLAST of MELO3C024768 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LUE7_CUCSA	1.7e-94	87.63	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G434180 PE=4 SV=1	[more]
A0A0A0LWK6_CUCSA	1.9e-58	89.26	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G385050 PE=4 SV=1	[more]
A5BG67_VITVI	1.3e-51	33.94	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010890 PE=4 SV=1	[more]
F6H9U7_VITVI	3.0e-51	32.48	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0085g00640 PE=4 SV=...	[more]
F6GZH2_VITVI	1.9e-50	36.51	Putative uncharacterized protein (Fragment) OS=Vitis vinifera GN=VIT_00s2213g000...	[more]

BLAST of MELO3C024768 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700210424\|gb\|KGN65520.1\|	2.4e-94	87.63	hypothetical protein Csa_1G434180 [Cucumis sativus]	[more]
gi\|700210273\|gb\|KGN65369.1\|	2.8e-58	89.26	hypothetical protein Csa_1G385050 [Cucumis sativus]	[more]
gi\|147863969\|emb\|CAN83211.1\|	1.9e-51	33.94	hypothetical protein VITISV_010890 [Vitis vinifera]	[more]
gi\|147806086\|emb\|CAN63337.1\|	1.7e-47	32.51	hypothetical protein VITISV_033711 [Vitis vinifera]	[more]
gi\|1012345526\|gb\|KYP56718.1\|	3.5e-45	30.54	Enzymatic polyprotein, partial [Cajanus cajan]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C024768T1	MELO3C024768T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33054	FAMILY NOT NAMED	coord: 159..321 score: 1.6
None	No IPR available	PANTHER	PTHR33054:SF3	SUBFAMILY NOT NAMED	coord: 159..321 score: 1.6

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C024768	Cucumber (Chinese Long) v3	cucmeB103
MELO3C024768	Watermelon (97103) v2	mewmbB092
MELO3C024768	Wax gourd	mewgoB126
MELO3C024768	Cucumber (Gy14) v1	cgymeB072
MELO3C024768	Cucurbita maxima (Rimu)	cmameB493
MELO3C024768	Cucurbita maxima (Rimu)	cmameB534
MELO3C024768	Cucurbita moschata (Rifu)	cmomeB483
MELO3C024768	Cucurbita moschata (Rifu)	cmomeB524
MELO3C024768	Wild cucumber (PI 183967)	cpimeB096
MELO3C024768	Cucumber (Chinese Long) v2	cumeB087
MELO3C024768	Watermelon (Charleston Gray)	mewcgB090
MELO3C024768	Watermelon (97103) v1	mewmB125
MELO3C024768	Cucurbita pepo (Zucchini)	cpemeB260
MELO3C024768	Cucurbita pepo (Zucchini)	cpemeB672
MELO3C024768	Bottle gourd (USVL1VR-Ls)	lsimeB053
MELO3C024768	Cucumber (Gy14) v2	cgybmeB083
MELO3C024768	Silver-seed gourd	carmeB0935