MELO3C024765 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C024765
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Putative Athila retroelement ORF1 protein
Location	chr11 : 7848819 .. 7849279 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGACCCTGAAAGCTTCACGCTACCTTGCTCAATTGGCAGGATCGATCTAGGTCGTGCTCTATGTGACTTGGGAGCAAGCATTAATTTGATGCCTCTTTCTATATATTTAAGAAGTTGAAGACAAGGGAGCTGCAACCAACTCATACGAGAGTCCAATTTGTTCGTAGGTCCACTTTCAAACCTAAGGACGAGATTGAAGATGTTTTGGTTAAGGTGGACAAATTTTTACTTCTCACAAACTTTGTCAGTCTGGACTATGAAGCTAATCGGAAGGTACCTATCATTTTAGGGCGGCCATTCCAATCAACTGGTCGTGCCCTCATACATGTCCACCAAGGGGAACTTACAATGCTTTTTAATGACGAAAAAATTACATTTAATGTGGCTAACGCAATGAAGTTCCCTGATGATGTTGCGAGTTGCAATATAAAAGAGTTCCTGGGTTGGGACTATTAG

mRNA sequence

ATGGCAGACCCTGAAAGCTTCACGCTACCTTGCTCAATTGGCAGGATCGATCTAGGTCGTGCTCTATGTGACTTGGGAGCAAGCATTAATTTGATGCCTCTTTCTATATATTTAAGAATCCAATTTGTTCGTAGGTCCACTTTCAAACCTAAGGACGAGATTGAAGATGTTTTGGTTAAGGTGGACAAATTTTTACTTCTCACAAACTTTGTCAGTCTGGACTATGAAGCTAATCGGAAGGTACCTATCATTTTAGGGCGGCCATTCCAATCAACTGGTCGTGCCCTCATACATGTCCACCAAGGGGAACTTACAATGCTTTTTAATGACGAAAAAATTACATTTAATGTGGCTAACGCAATGAAGTTCCCTGATGATGTTGCGAGTTGCAATATAAAAGAGTTCCTGGGTTGGGACTATTAG

Coding sequence (CDS)

ATGGCAGACCCTGAAAGCTTCACGCTACCTTGCTCAATTGGCAGGATCGATCTAGGTCGTGCTCTATGTGACTTGGGAGCAAGCATTAATTTGATGCCTCTTTCTATATATTTAAGAATCCAATTTGTTCGTAGGTCCACTTTCAAACCTAAGGACGAGATTGAAGATGTTTTGGTTAAGGTGGACAAATTTTTACTTCTCACAAACTTTGTCAGTCTGGACTATGAAGCTAATCGGAAGGTACCTATCATTTTAGGGCGGCCATTCCAATCAACTGGTCGTGCCCTCATACATGTCCACCAAGGGGAACTTACAATGCTTTTTAATGACGAAAAAATTACATTTAATGTGGCTAACGCAATGAAGTTCCCTGATGATGTTGCGAGTTGCAATATAAAAGAGTTCCTGGGTTGGGACTATTAG

Protein sequence

MADPESFTLPCSIGRIDLGRALCDLGASINLMPLSIYLRIQFVRRSTFKPKDEIEDVLVKVDKFLLLTNFVSLDYEANRKVPIILGRPFQSTGRALIHVHQGELTMLFNDEKITFNVANAMKFPDDVASCNIKEFLGWDY*

Homology

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BLAST of MELO3C024765 vs. TrEMBL
Match: A5AZ88_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037041 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 3.0e-31
Identity = 73/142 (51.41%), Postives = 93/142 (65.49%), Query Frame = 1


Query: 1   MADPESFTLPCSIGRIDLGRALCDLGASINLMPLSIYLRI------------QFVRRSTF 60
           + DP SFT+PC+IG  D  + LCDLG S+NLMPLSI+ ++            Q   RS  
Sbjct: 348 LKDPGSFTIPCTIGDFDFDKVLCDLGESVNLMPLSIFRKLGLGEVKLTTVCLQLADRSIK 407

Query: 61  KPKDEIEDVLVKVDKFLLLTNFVSLDYEANRKVPIILGRPFQSTGRALIHVHQGELTMLF 120
            P+  IEDVLVKVDKFL   +F+ LD E +R VP+ILGRPF +T R LI  HQG+L +  
Sbjct: 408 HPRGIIEDVLVKVDKFLFPIDFIVLDMEEDRDVPLILGRPFLATSRTLIDFHQGKLILRV 467

Query: 121 NDEKITFNVANAMKFPDDVASC 131
            DE++TFNV  AMKFP +V +C
Sbjct: 468 QDEQVTFNVFEAMKFPSNVDAC 489

[Close]

BLAST of MELO3C024765 vs. TrEMBL
Match: A0A0S3QWS7_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G023800 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 4.3e-30
Identity = 75/142 (52.82%), Postives = 93/142 (65.49%), Query Frame = 1


Query: 1   MADPESFTLPCSIGRIDLGRALCDLGASINLMPLSIYLRI------------QFVRRSTF 60
           + DP SF +PC IG I +G+ALCDLGASINLMPLSI+ R+            Q   RS  
Sbjct: 127 LKDPGSFVIPCEIGNITVGKALCDLGASINLMPLSIFKRLGIGEVKPTMITLQLADRSMT 186

Query: 61  KPKDEIEDVLVKVDKFLLLTNFVSLDYEANRKVPIILGRPFQSTGRALIHVHQGELTMLF 120
            P   +EDVLVKVDKF+  T+FV LD E + KVPIILGRPF +TGRALI V QG+L +  
Sbjct: 187 YPYGIVEDVLVKVDKFIFPTDFVVLDMEEDAKVPIILGRPFLATGRALIDVEQGQLMLRV 246

Query: 121 NDEKITFNVANAMKFPDDVASC 131
            +EK+TF++  A+K   D   C
Sbjct: 247 ANEKVTFSMTEAVKHKLDREDC 268

[Close]

BLAST of MELO3C024765 vs. TrEMBL
Match: A0A151SV10_CAJCA (Retrovirus-related Pol polyprotein from transposon opus OS=Cajanus cajan GN=KK1_014042 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.3e-29
Identity = 74/142 (52.11%), Postives = 91/142 (64.08%), Query Frame = 1


Query: 1   MADPESFTLPCSIGRIDLGRALCDLGASINLMPLSIYLRI------------QFVRRSTF 60
           + DP SF +PC IG + + +ALCDLGASINLMPLSI+ R+            Q   RS  
Sbjct: 18  LKDPGSFVIPCEIGNLMVSKALCDLGASINLMPLSIFKRLGIGEVKPTMITLQLADRSVT 77

Query: 61  KPKDEIEDVLVKVDKFLLLTNFVSLDYEANRKVPIILGRPFQSTGRALIHVHQGELTMLF 120
            P   +EDVLVKVDKF+   NFV LD E + KVPIILGRPF +TGRALI V QGEL +  
Sbjct: 78  CPYGVVEDVLVKVDKFIFPANFVVLDMEEDAKVPIILGRPFLATGRALIDVQQGELMLRV 137

Query: 121 NDEKITFNVANAMKFPDDVASC 131
            +EK+TF++  A+K   D   C
Sbjct: 138 ANEKVTFSINEALKHKVDREDC 159

[Close]

BLAST of MELO3C024765 vs. TrEMBL
Match: A0A0L9THI7_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan853s000100 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 4.0e-28
Identity = 69/142 (48.59%), Postives = 92/142 (64.79%), Query Frame = 1


Query: 1   MADPESFTLPCSIGRIDLGRALCDLGASINLMPLSIYLRI------------QFVRRSTF 60
           + DP SF +PC+IG +++GRAL DLGASINLMPLS+  +I            Q   RS  
Sbjct: 41  LKDPGSFNIPCTIGDLEVGRALIDLGASINLMPLSMCKQIEGLDIKPTRMALQLADRSLK 100

Query: 61  KPKDEIEDVLVKVDKFLLLTNFVSLDYEANRKVPIILGRPFQSTGRALIHVHQGELTMLF 120
            P   +EDVLVKVDKF+ L +F+ ++ E N  VP+ILGRPF  T R LI V  G+L +  
Sbjct: 101 YPYGVVEDVLVKVDKFVFLVDFIVMEMEGNSDVPLILGRPFMKTTRVLIDVENGKLKLRV 160

Query: 121 NDEKITFNVANAMKFPDDVASC 131
           +DEK+TF+V  AM +P+D  +C
Sbjct: 161 HDEKVTFDVFKAMTYPNDDKAC 182

[Close]

BLAST of MELO3C024765 vs. TrEMBL
Match: A0A0S3RK86_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.03G063900 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.3e-26
Identity = 66/140 (47.14%), Postives = 90/140 (64.29%), Query Frame = 1


Query: 3   DPESFTLPCSIGRIDLGRALCDLGASINLMPLSIYLRI------------QFVRRSTFKP 62
           DP SFT+PC+IG + +G AL DLGASINLMPLS++ +I            Q   RS   P
Sbjct: 107 DPGSFTIPCTIGELAIGNALIDLGASINLMPLSMFKKIGELELKPTRMTLQLADRSIKYP 166

Query: 63  KDEIEDVLVKVDKFLLLTNFVSLDYEANRKVPIILGRPFQSTGRALIHVHQGELTMLFND 122
           +  +EDVLVKVDKFL   +FV ++ + + ++P+ILGRPF  T R LI V +G+L +   D
Sbjct: 167 QGVVEDVLVKVDKFLFPVDFVVMEMKEDIEIPLILGRPFMKTARVLIDVDEGKLKVRVED 226

Query: 123 EKITFNVANAMKFPDDVASC 131
           E++ FNV  AM  P+D  +C
Sbjct: 227 EEVNFNVFEAMSHPNDEDTC 246

[Close]

BLAST of MELO3C024765 vs. NCBI nr
Match: gi|659130345|ref|XP_008465121.1| (PREDICTED: uncharacterized protein LOC103502805 [Cucumis melo])

HSP 1 Score: 169.1 bits (427), Expect = 5.6e-39
Identity = 91/149 (61.07%), Postives = 107/149 (71.81%), Query Frame = 1


Query: 1   MADPESFTLPCSIGRIDLGRALCDLGASINLMPLSIY------------LRIQFVRRSTF 60
           M D  SFT+PCSI  +DLG  LCDLGASINLMPLSI+            +R+QFV RS  
Sbjct: 31  MTDCRSFTVPCSINNMDLGHVLCDLGASINLMPLSIFKKLEIEEVQPMHMRLQFVDRSIA 90

Query: 61  KPKDEIEDVLVKVDKFLLLTNFVSLDYEANRKVPIILGRPFQSTGRALIHVHQGELTMLF 120
           K + +IED+LVKVDKFL   +F+ LDYEAN++VPII GRPF STG ALI VHQGELTM F
Sbjct: 91  KHEGKIEDILVKVDKFLFHADFIILDYEANQEVPIIFGRPFLSTGHALIDVHQGELTMRF 150

Query: 121 NDEKITFNVANAMKFPDDVASCNIKEFLG 138
           NDE + FNV NAMKFP D  + ++ E LG
Sbjct: 151 NDE-VKFNVMNAMKFPTDDKNYSMIESLG 178

[Close]

BLAST of MELO3C024765 vs. NCBI nr
Match: gi|659093662|ref|XP_008447648.1| (PREDICTED: uncharacterized protein LOC103490055 [Cucumis melo])

HSP 1 Score: 158.7 bits (400), Expect = 7.5e-36
Identity = 86/148 (58.11%), Postives = 101/148 (68.24%), Query Frame = 1


Query: 1   MADPESFTLPCSIGRIDLGRALCDLGASINLMPLSIY------------LRIQFVRRSTF 60
           M  P SF +PCSI  +DLG  LCDLGASINLMPLSI+            +R Q   RS  
Sbjct: 42  MTYPGSFKVPCSIDGMDLGHVLCDLGASINLMPLSIFKKLKIKEVQPTHMRFQLADRSIT 101

Query: 61  KPKDEIEDVLVKVDKFLLLTNFVSLDYEANRKVPIILGRPFQSTGRALIHVHQGELTMLF 120
            PK +IEDVLVKVDKFL   +F+ LDYEA+ +V IIL R F STGRAL ++HQGELT+ F
Sbjct: 102 NPKGKIEDVLVKVDKFLFFADFIILDYEADEEVLIILRRLFLSTGRALTYIHQGELTVFF 161

Query: 121 NDEKITFNVANAMKFPDDVASCNIKEFL 137
           N+++I FNV NAMKFP D  SCN  E L
Sbjct: 162 NNKEIKFNVINAMKFPLDDESCNTIESL 189

[Close]

BLAST of MELO3C024765 vs. NCBI nr
Match: gi|985438230|ref|XP_015383504.1| (PREDICTED: uncharacterized protein LOC107176019 [Citrus sinensis])

HSP 1 Score: 151.0 bits (380), Expect = 1.6e-33
Identity = 75/143 (52.45%), Postives = 99/143 (69.23%), Query Frame = 1


Query: 1   MADPESFTLPCSIGRIDLGRALCDLGASINLMPLSIY------------LRIQFVRRSTF 60
           + DP SFT+PCSIG     RALCDLGASIN MPLS++            + +Q   RS  
Sbjct: 336 LKDPGSFTIPCSIGNKYASRALCDLGASINFMPLSVFKQLGVGECRPTTVTLQLADRSHA 395

Query: 61  KPKDEIEDVLVKVDKFLLLTNFVSLDYEANRKVPIILGRPFQSTGRALIHVHQGELTMLF 120
            P+ +IEDVLVKVDKF+   +F+ LD+EA +++PIILGRPF +TG+ LI V +GELTM  
Sbjct: 396 YPEGKIEDVLVKVDKFIFPVDFIVLDFEAEKELPIILGRPFLATGKTLIDVQKGELTMRV 455

Query: 121 NDEKITFNVANAMKFPDDVASCN 132
           ND+++TFNV  AM+ PD++  CN
Sbjct: 456 NDQQVTFNVLEAMRNPDEIEDCN 478

[Close]

BLAST of MELO3C024765 vs. NCBI nr
Match: gi|985466598|ref|XP_015389607.1| (PREDICTED: uncharacterized protein LOC107178669 [Citrus sinensis])

HSP 1 Score: 148.3 bits (373), Expect = 1.0e-32
Identity = 76/141 (53.90%), Postives = 97/141 (68.79%), Query Frame = 1


Query: 3   DPESFTLPCSIGRIDLGRALCDLGASINLMPLSIY------------LRIQFVRRSTFKP 62
           DP SFT+ CSIG    GRALCDLGAS+NLMPLS++            + +Q   R    P
Sbjct: 99  DPRSFTIHCSIGTRYTGRALCDLGASMNLMPLSVFKQLGVEESRPTIVTLQLANRFHVYP 158

Query: 63  KDEIEDVLVKVDKFLLLTNFVSLDYEANRKVPIILGRPFQSTGRALIHVHQGELTMLFND 122
           + +IEDVLVKVDKF+   +F+ LD+EA++KVPIILG PF  TG+ LI V +GELTM  ND
Sbjct: 159 EGKIEDVLVKVDKFIFPVDFIVLDFEADKKVPIILGIPFLVTGKTLIDVQKGELTMRVND 218

Query: 123 EKITFNVANAMKFPDDVASCN 132
           +++TFNV  AMK PD++  CN
Sbjct: 219 QQVTFNVLEAMKNPDELEDCN 239

[Close]

BLAST of MELO3C024765 vs. NCBI nr
Match: gi|985473850|ref|XP_015381895.1| (PREDICTED: uncharacterized protein LOC107175069 [Citrus sinensis])

HSP 1 Score: 147.9 bits (372), Expect = 1.3e-32
Identity = 74/143 (51.75%), Postives = 99/143 (69.23%), Query Frame = 1


Query: 1   MADPESFTLPCSIGRIDLGRALCDLGASINLMPLSIY------------LRIQFVRRSTF 60
           + D   FT+PCSIG    GRALCDLGASINLMPLS++            + +Q   RS  
Sbjct: 121 LKDRGGFTIPCSIGTRYAGRALCDLGASINLMPLSVFKQLGVGECRPTTVTLQLADRSHV 180

Query: 61  KPKDEIEDVLVKVDKFLLLTNFVSLDYEANRKVPIILGRPFQSTGRALIHVHQGELTMLF 120
            P+ +IEDVL KVDKF+   +F+ LD+EA+++VPIILG+PF +TG+ LI V +GELTM  
Sbjct: 181 YPEGKIEDVLAKVDKFIFPVDFIVLDFEADKEVPIILGKPFLATGKTLIDVQKGELTMGV 240

Query: 121 NDEKITFNVANAMKFPDDVASCN 132
           ND+++TFNV  AM+ PD++  CN
Sbjct: 241 NDQQVTFNVLEAMRNPDEIEDCN 263

The following BLAST results are available for this feature:

BLAST of MELO3C024765 vs. TrEMBL


Match Name	E-value	Identity	Description
A5AZ88_VITVI	3.0e-31	51.41	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037041 PE=4 SV=1	[more]
A0A0S3QWS7_PHAAN	4.3e-30	52.82	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G023800 PE=...	[more]
A0A151SV10_CAJCA	1.3e-29	52.11	Retrovirus-related Pol polyprotein from transposon opus OS=Cajanus cajan GN=KK1_...	[more]
A0A0L9THI7_PHAAN	4.0e-28	48.59	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan853s000100 PE=4 SV=1	[more]
A0A0S3RK86_PHAAN	1.3e-26	47.14	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.03G063900 PE=...	[more]

BLAST of MELO3C024765 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659130345\|ref\|XP_008465121.1\|	5.6e-39	61.07	PREDICTED: uncharacterized protein LOC103502805 [Cucumis melo]	[more]
gi\|659093662\|ref\|XP_008447648.1\|	7.5e-36	58.11	PREDICTED: uncharacterized protein LOC103490055 [Cucumis melo]	[more]
gi\|985438230\|ref\|XP_015383504.1\|	1.6e-33	52.45	PREDICTED: uncharacterized protein LOC107176019 [Citrus sinensis]	[more]
gi\|985466598\|ref\|XP_015389607.1\|	1.0e-32	53.90	PREDICTED: uncharacterized protein LOC107178669 [Citrus sinensis]	[more]
gi\|985473850\|ref\|XP_015381895.1\|	1.3e-32	51.75	PREDICTED: uncharacterized protein LOC107175069 [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C024765T1	MELO3C024765T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33067	FAMILY NOT NAMED	coord: 3..101 score: 1.5
None	No IPR available	PANTHER	PTHR33067:SF2	SUBFAMILY NOT NAMED	coord: 3..101 score: 1.5

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C024765	Cucurbita pepo (Zucchini)	cpemeB260
MELO3C024765	Cucurbita pepo (Zucchini)	cpemeB672
MELO3C024765	Bottle gourd (USVL1VR-Ls)	lsimeB053
MELO3C024765	Cucumber (Gy14) v2	cgybmeB083
MELO3C024765	Silver-seed gourd	carmeB0935
MELO3C024765	Cucumber (Chinese Long) v3	cucmeB103
MELO3C024765	Watermelon (97103) v2	mewmbB092
MELO3C024765	Wax gourd	mewgoB126
MELO3C024765	Cucumber (Gy14) v1	cgymeB072
MELO3C024765	Cucurbita maxima (Rimu)	cmameB493
MELO3C024765	Cucurbita maxima (Rimu)	cmameB534
MELO3C024765	Cucurbita moschata (Rifu)	cmomeB483
MELO3C024765	Cucurbita moschata (Rifu)	cmomeB524
MELO3C024765	Wild cucumber (PI 183967)	cpimeB096
MELO3C024765	Cucumber (Chinese Long) v2	cumeB087
MELO3C024765	Watermelon (Charleston Gray)	mewcgB090
MELO3C024765	Watermelon (97103) v1	mewmB125