MELO3C024759 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C024759
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Endonuclease/exonuclease/phosphatase family protein
Location	chr11 : 7740471 .. 7741032 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTATTGTGTTGGTTTGAGTAAGCTGTTGTGTTGATGTTTTTAAAGATACCTAACCAATTCCATGGAATACAAGGGGCTGAAAGATCCTACCAAGCGCATAGCACTTAAGAAATCCATCAAGAACCATCATCCGGATGTGGTTATAATTCAAGAATCAAAAATGGAAAACTTTGATGCATTATTTACTAAATCAATATGGAGTTCCAAAGAAATCGGATGGGAGTTTGTGGAATCAATTAGTGCATCGGGGGCATTCTCAAAATGTGGGATGAGCAAAATTACTGTGGTTGAGATTACCAAAGGGAGGTTTTCTGCCCAATTAACGGTGATACGGTATGCAAAAGACGCTGGTGGATTCGCAATGTATACGGCCCATGTGGTTACTTGTTTGGTCAGAGCTCTTATCCATTTTAGATGCGGTATTGCGGAGATTTCAACGTTACTCACTGGGCTCATTGGCAGAAACACAAGAGGAATGAGGCTATTTAATAACTTCATTGATTCAGCTAATATCATGGAACTTCCTCTTCAAAATGGCAGATACACATGGTCAAGACCTTGA

mRNA sequence

GTATTGTGTTGGTTTGAGTAAGCTGTTGTGTTGATGTTTTTAAAGATACCTAACCAATTCCATGGAATACAAGGGGCTGAAAGATCCTACCAAGCGCATAGCACTTAAGAAATCCATCAAGAACCATCATCCGGATGTGGTTATAATTCAAGAATCAAAAATGGAAAACTTTGATGCATTATTTACTAAATCAATATGGAGTTCCAAAGAAATCGGATGGGAGTTTGTGGAATCAATTAGTGCATCGGGGGCATTCTCAAAATGTGGGATGAGCAAAATTACTGTGGTTGAGATTACCAAAGGGAGGTTTTCTGCCCAATTAACGGTGATACGGTATGCAAAAGACGCTGGTGGATTCGCAATGTATACGGCCCATGTGGTTACTTGTTTGGTCAGAGCTCTTATCCATTTTAGATGCGGTATTGCGGAGATTTCAACGTTACTCACTGGGCTCATTGGCAGAAACACAAGAGGAATGAGGCTATTTAATAACTTCATTGATTCAGCTAATATCATGGAACTTCCTCTTCAAAATGGCAGATACACATGGTCAAGACCTTGA

Coding sequence (CDS)

ATGGAATACAAGGGGCTGAAAGATCCTACCAAGCGCATAGCACTTAAGAAATCCATCAAGAACCATCATCCGGATGTGGTTATAATTCAAGAATCAAAAATGGAAAACTTTGATGCATTATTTACTAAATCAATATGGAGTTCCAAAGAAATCGGATGGGAGTTTGTGGAATCAATTAGTGCATCGGGGGCATTCTCAAAATGTGGGATGAGCAAAATTACTGTGGTTGAGATTACCAAAGGGAGGTTTTCTGCCCAATTAACGGTGATACGGTATGCAAAAGACGCTGGTGGATTCGCAATGTATACGGCCCATGTGGTTACTTGTTTGGTCAGAGCTCTTATCCATTTTAGATGCGGTATTGCGGAGATTTCAACGTTACTCACTGGGCTCATTGGCAGAAACACAAGAGGAATGAGGCTATTTAATAACTTCATTGATTCAGCTAATATCATGGAACTTCCTCTTCAAAATGGCAGATACACATGGTCAAGACCTTGA

Protein sequence

MEYKGLKDPTKRIALKKSIKNHHPDVVIIQESKMENFDALFTKSIWSSKEIGWEFVESISASGAFSKCGMSKITVVEITKGRFSAQLTVIRYAKDAGGFAMYTAHVVTCLVRALIHFRCGIAEISTLLTGLIGRNTRGMRLFNNFIDSANIMELPLQNGRYTWSRP*

Homology

[Close]

BLAST of MELO3C024759 vs. TrEMBL
Match: A5CA21_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_019062 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.4e-06
Identity = 49/180 (27.22%), Postives = 84/180 (46.67%), Query Frame = 1


Query: 4   KGLKDPTKRIALKKSIKNHHPDVVIIQESKMENFDALFTKSIWSSKEIGWEFVESISASG 63
           +G  D +KR  +K  I++   DV  +QE+K++       +S+ + + +GW  +E+  ++G
Sbjct: 120 RGANDSSKRKVIKALIRSQRVDVFCLQETKIQAMSEGVVRSLGTGRFLGWGALEASGSAG 179

Query: 64  AFSKCGMSK-ITVVEITKGRFSAQLTVIRYAKDA------GGFAMYTAHVVTCLVRALIH 123
               C   + + V+++  G+FS    V R  +D       G +  ++     CL   L  
Sbjct: 180 GILVCWDRRTLDVLDVEVGQFSISCRV-RNVEDGFCWMFTGVYXPFSRDERECLWEELGA 239

Query: 124 FRCGIAEIS---------TLLTG---LIGRNTRGMRLFNNFIDSANIMELPLQNGRYTWS 165
            R G+ ++          TLL G     GR T  MR F   +D   + +LPLQ GR TW+
Sbjct: 240 IR-GLWDVPWCLGGDFNITLLQGERSRQGRITGAMRRFAQMVDELELTDLPLQGGRCTWN 297

[Close]

BLAST of MELO3C024759 vs. TrEMBL
Match: M5WJ76_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa015871mg PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.9e-06
Identity = 47/180 (26.11%), Postives = 77/180 (42.78%), Query Frame = 1


Query: 4   KGLKDPTKRIALKKSIKNHHPDVVIIQESKMENFDALFTKSIWSSKEIGWEFVESISASG 63
           +GL    KR+ +K+ ++   PD+VI+ E+K E  D      +W S+   W F  S+  SG
Sbjct: 331 RGLGSRRKRLLVKEQLRRLKPDIVILLETKKEIVDRQLVAGVWGSRFKEWVFSPSLGRSG 390

Query: 64  AFSKCGMSK-ITVVEITKGRFSAQLTVIRYAKDAGGFAMYTAHVVTCLVRALIHFRCGIA 123
             +    S+ ++V++   G FS     IR  ++ G     +     C  R    F   +A
Sbjct: 391 GIAVLWNSQSVSVIDSMVGEFSVS---IRIEENIGTDWWLSGIYGPCRQRERNSFWEELA 450

Query: 124 EISTLLTGL------------------IGRNTRGMRLFNNFIDSANIMELPLQNGRYTWS 165
           ++      +                   GR T+ MR FN+FI   N+ +  L N  +TWS
Sbjct: 451 DLYGYCGDMWCLGGDFNVVRFSAEKSNEGRVTKSMRDFNDFIQETNLRDPILLNASFTWS 507

[Close]

BLAST of MELO3C024759 vs. TrEMBL
Match: M5VS59_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa016504mg PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 6.7e-06
Identity = 47/173 (27.17%), Postives = 75/173 (43.35%), Query Frame = 1


Query: 11  KRIALKKSIKNHHPDVVIIQESKMENFDALFTKSIWSSKEIGWEFVESISASGAFSKCGM 70
           KR+ +K+ ++   PD+VI+ E+K E  D      +W S+   W F  S+  SG  +    
Sbjct: 2   KRLLVKEQLRRLKPDIVILLETKKETVDRQLVAGVWGSRFKEWVFSPSLGRSGGIAVLWN 61

Query: 71  SK-ITVVEITKGRFSAQLTVIRYAKDAGGFAMYTAHVVTCLVRALIHFRCGIAEI----- 130
           S+ ++V++   G FS     IR  ++ G     +     C  R    F   +A++     
Sbjct: 62  SQSVSVIDSMVGEFSVS---IRIVENIGTDWWLSGIYGPCRQRERNSFWEELADLYGFCG 121

Query: 131 -STLLTGLI------------GRNTRGMRLFNNFIDSANIMELPLQNGRYTWS 165
               L G              GR T+ MR FN+FI   N+ +  L N  +TWS
Sbjct: 122 DKWCLGGDFNVVRFSAEKSNEGRVTKSMRDFNDFIQETNLRDPNLLNASFTWS 171

[Close]

BLAST of MELO3C024759 vs. NCBI nr
Match: gi|658030603|ref|XP_008350747.1| (PREDICTED: uncharacterized protein LOC103414113 [Malus domestica])

HSP 1 Score: 62.4 bits (150), Expect = 8.7e-07
Identity = 50/183 (27.32%), Postives = 81/183 (44.26%), Query Frame = 1


Query: 4   KGLKDPTKRIALKKSIKNHHPDVVIIQESKMENFDALFTKSIWSSKEIGWEFVESISASG 63
           +GL    KR+ LK+  +   PD++I+QE+K  + D     S+W S+   W +  +  +SG
Sbjct: 611 RGLGSKQKRLTLKQQFRRLQPDIIILQETKKTSIDRRLVASVWGSRFKEWIYAPAQGSSG 670

Query: 64  AFSKCGMSK-ITVVEITKGRFSAQLTVIRYAKDAGGFAMYTAHVV-TCLVR--------- 123
             +    +K I+V E   G FS  + +    K   G   + + V   C  R         
Sbjct: 671 GIAVIWNTKNISVTESLIGVFSVSIKI----KAFNGLEWWLSGVYGPCKSRERREFWEEM 730

Query: 124 ALIHFRCG-----------IAEISTLLTGLIGRNTRGMRLFNNFIDSANIMELPLQNGRY 165
           A ++  CG           +  ++    G  GR T  MR FN+FI    + +L L N ++
Sbjct: 731 AGLYGLCGPKWCVGGDFNVVRFVNEKSNG--GRLTTSMRNFNDFIRETELKDLELLNAQF 787

[Close]

BLAST of MELO3C024759 vs. NCBI nr
Match: gi|657990185|ref|XP_008387315.1| (PREDICTED: uncharacterized protein LOC103449768 [Malus domestica])

HSP 1 Score: 62.4 bits (150), Expect = 8.7e-07
Identity = 50/183 (27.32%), Postives = 81/183 (44.26%), Query Frame = 1


Query: 4    KGLKDPTKRIALKKSIKNHHPDVVIIQESKMENFDALFTKSIWSSKEIGWEFVESISASG 63
            +GL    KR+ LK+  +   PD++I+QE+K  + D     S+W S+   W +  +  +SG
Sbjct: 1008 RGLGSKQKRLTLKQQFRRLQPDIIILQETKKTSIDRRLVASVWGSRFKEWIYAPAQGSSG 1067

Query: 64   AFSKCGMSK-ITVVEITKGRFSAQLTVIRYAKDAGGFAMYTAHVV-TCLVR--------- 123
              +    +K I+V E   G FS  + +    K   G   + + V   C  R         
Sbjct: 1068 GIAVIWNTKNISVTESLIGVFSVSIKI----KAFNGLEWWLSGVYGPCKSRERREFWEEM 1127

Query: 124  ALIHFRCG-----------IAEISTLLTGLIGRNTRGMRLFNNFIDSANIMELPLQNGRY 165
            A ++  CG           +  ++    G  GR T  MR FN+FI    + +L L N ++
Sbjct: 1128 AGLYGLCGPKWCVGGDFNVVRFVNEKSNG--GRLTTSMRNFNDFIRETELKDLELLNAQF 1184

[Close]

BLAST of MELO3C024759 vs. NCBI nr
Match: gi|147801137|emb|CAN71042.1| (hypothetical protein VITISV_019062 [Vitis vinifera])

HSP 1 Score: 61.2 bits (147), Expect = 1.9e-06
Identity = 49/180 (27.22%), Postives = 84/180 (46.67%), Query Frame = 1


Query: 4   KGLKDPTKRIALKKSIKNHHPDVVIIQESKMENFDALFTKSIWSSKEIGWEFVESISASG 63
           +G  D +KR  +K  I++   DV  +QE+K++       +S+ + + +GW  +E+  ++G
Sbjct: 120 RGANDSSKRKVIKALIRSQRVDVFCLQETKIQAMSEGVVRSLGTGRFLGWGALEASGSAG 179

Query: 64  AFSKCGMSK-ITVVEITKGRFSAQLTVIRYAKDA------GGFAMYTAHVVTCLVRALIH 123
               C   + + V+++  G+FS    V R  +D       G +  ++     CL   L  
Sbjct: 180 GILVCWDRRTLDVLDVEVGQFSISCRV-RNVEDGFCWMFTGVYXPFSRDERECLWEELGA 239

Query: 124 FRCGIAEIS---------TLLTG---LIGRNTRGMRLFNNFIDSANIMELPLQNGRYTWS 165
            R G+ ++          TLL G     GR T  MR F   +D   + +LPLQ GR TW+
Sbjct: 240 IR-GLWDVPWCLGGDFNITLLQGERSRQGRITGAMRRFAQMVDELELTDLPLQGGRCTWN 297

[Close]

BLAST of MELO3C024759 vs. NCBI nr
Match: gi|595882371|ref|XP_007212580.1| (hypothetical protein PRUPE_ppa015871mg, partial [Prunus persica])

HSP 1 Score: 59.7 bits (143), Expect = 5.6e-06
Identity = 47/180 (26.11%), Postives = 77/180 (42.78%), Query Frame = 1


Query: 4   KGLKDPTKRIALKKSIKNHHPDVVIIQESKMENFDALFTKSIWSSKEIGWEFVESISASG 63
           +GL    KR+ +K+ ++   PD+VI+ E+K E  D      +W S+   W F  S+  SG
Sbjct: 331 RGLGSRRKRLLVKEQLRRLKPDIVILLETKKEIVDRQLVAGVWGSRFKEWVFSPSLGRSG 390

Query: 64  AFSKCGMSK-ITVVEITKGRFSAQLTVIRYAKDAGGFAMYTAHVVTCLVRALIHFRCGIA 123
             +    S+ ++V++   G FS     IR  ++ G     +     C  R    F   +A
Sbjct: 391 GIAVLWNSQSVSVIDSMVGEFSVS---IRIEENIGTDWWLSGIYGPCRQRERNSFWEELA 450

Query: 124 EISTLLTGL------------------IGRNTRGMRLFNNFIDSANIMELPLQNGRYTWS 165
           ++      +                   GR T+ MR FN+FI   N+ +  L N  +TWS
Sbjct: 451 DLYGYCGDMWCLGGDFNVVRFSAEKSNEGRVTKSMRDFNDFIQETNLRDPILLNASFTWS 507

[Close]

BLAST of MELO3C024759 vs. NCBI nr
Match: gi|731333352|ref|XP_010677687.1| (PREDICTED: uncharacterized protein LOC104893285 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 59.7 bits (143), Expect = 5.6e-06
Identity = 51/189 (26.98%), Postives = 76/189 (40.21%), Query Frame = 1


Query: 4   KGLKDPTKRIALKKSIKNHHPDVVIIQESKMENFDALFTKSIWSSKEIGWEFVESISASG 63
           +G     KR +L+K I  H P VV IQE+K+E+F     KSIW+   I W    S   SG
Sbjct: 9   RGANARIKRSSLRKVIIKHEPHVVFIQETKVEDFSPQIIKSIWNVDNIDWLASPSFGNSG 68

Query: 64  AFSKCGMSKITVVEITKGRFSAQLTVIRYAKDAGGFAMYTAHVVTCLV------------ 123
                  S   ++E  +   S  +T+I Y         ++     CL+            
Sbjct: 69  GLLTLWRSDFFILESFRVE-SNWITIISY--------FHSLEFKGCLINIYNPCDREGRL 128

Query: 124 ---RALIHFRCGIAEISTLLTGLIGR------------NTRGMRLFNNFIDSANIMELPL 166
               A+I +R    + S  + G                +  G + F +FI  A++ ELP 
Sbjct: 129 EIWNAIIEYR-NYHQSSKFILGDFNEVLEPFDRGSNNISQSGAQEFKDFIQGAHLTELPA 187

The following BLAST results are available for this feature:

BLAST of MELO3C024759 vs. TrEMBL


Match Name	E-value	Identity	Description
A5CA21_VITVI	1.4e-06	27.22	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_019062 PE=4 SV=1	[more]
M5WJ76_PRUPE	3.9e-06	26.11	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa015871mg PE=4 S...	[more]
M5VS59_PRUPE	6.7e-06	27.17	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa016504mg PE=4 S...	[more]

BLAST of MELO3C024759 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|658030603\|ref\|XP_008350747.1\|	8.7e-07	27.32	PREDICTED: uncharacterized protein LOC103414113 [Malus domestica]	[more]
gi\|657990185\|ref\|XP_008387315.1\|	8.7e-07	27.32	PREDICTED: uncharacterized protein LOC103449768 [Malus domestica]	[more]
gi\|147801137\|emb\|CAN71042.1\|	1.9e-06	27.22	hypothetical protein VITISV_019062 [Vitis vinifera]	[more]
gi\|595882371\|ref\|XP_007212580.1\|	5.6e-06	26.11	hypothetical protein PRUPE_ppa015871mg, partial [Prunus persica]	[more]
gi\|731333352\|ref\|XP_010677687.1\|	5.6e-06	26.98	PREDICTED: uncharacterized protein LOC104893285 [Beta vulgaris subsp. vulgaris]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005135	Endo/exonuclease/phosphatase
IPR020847	AP_endonuclease_F1_BS

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0004519	endonuclease activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular

Vocabulary: **Biological Process**
Term	Definition
GO:0006281	DNA repair

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006281	DNA repair
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0004519	endonuclease activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C024759T1	MELO3C024759T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005135	Endonuclease/exonuclease/phosphatase	GENE3D	G3DSA:3.60.10.10		coord: 4..58 score: 8.
IPR005135	Endonuclease/exonuclease/phosphatase	unknown	SSF56219	DNase I-like	coord: 12..164 score: 5.2
IPR020847	AP endonuclease 1, binding site	PROSITE	PS00726	AP_NUCLEASE_F1_1	coord: 24..33 scor

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C024759	Watermelon (97103) v2	mewmbB092
MELO3C024759	Wax gourd	mewgoB126
MELO3C024759	Cucumber (Gy14) v1	cgymeB072
MELO3C024759	Cucurbita maxima (Rimu)	cmameB493
MELO3C024759	Cucurbita maxima (Rimu)	cmameB534
MELO3C024759	Cucurbita moschata (Rifu)	cmomeB483
MELO3C024759	Cucurbita moschata (Rifu)	cmomeB524
MELO3C024759	Wild cucumber (PI 183967)	cpimeB096
MELO3C024759	Cucumber (Chinese Long) v2	cumeB087
MELO3C024759	Watermelon (Charleston Gray)	mewcgB090
MELO3C024759	Watermelon (97103) v1	mewmB125
MELO3C024759	Cucurbita pepo (Zucchini)	cpemeB260
MELO3C024759	Cucurbita pepo (Zucchini)	cpemeB672
MELO3C024759	Bottle gourd (USVL1VR-Ls)	lsimeB053
MELO3C024759	Cucumber (Gy14) v2	cgybmeB083
MELO3C024759	Silver-seed gourd	carmeB0935
MELO3C024759	Silver-seed gourd	carmeB1022
MELO3C024759	Cucumber (Chinese Long) v3	cucmeB103