MELO3C024758 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C024758
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionZinc finger and BTB domain-containing protein 40
Locationchr11 : 7739617 .. 7740318 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCTTTGTTAAACCCGCTAAAGACATTTGTTCGAATAAGTCTGTGGGCCCCACAAATTTTGATTCCTTTTTTAAAAATCAGGTACCCAAAGGGTCGGATAGGGAAAAAGAAAACAGAATGGCGCCTTCAATTACTGTGGTTCTGAAAATGCTGCCACCAACCCACCCTATTCAGATTTTAAACAGCCTCTCTATCAAAAAGTTTCAGTTAGCCGGTGCCGCTCAGTCCTCAACAAAGGTTGTTACCTCATTCAAGCTTAGACCAAGTAAAGGAAAGAAAAAAGGCAGTTCTCCGAAAATTCCCCTAAAGCATTTCATCAGAAAACAAAAATCTTTTGATAATGTCTGGACTGCACTGCTAAAGTCTAAATCACTTGTTGCTTGCTCTTTCAAAGCTACAAAAGAGGCTCCACAGCAGAACTTAATTATCAAGCCCTCTCTATCTGAGAATAACCCAAATCTCCTGGAGGCCTGCAGCTCCAAAGTTCGAATTGATACGCTTCAAAACAGGTCAGTTACAGCTCCCCCAGCTCCTAAACTCTTCAGTTACTCGAGTTTCACAGATCCTAACACTAAAATTATCTTATTACGAGGTTCTCCATGCCACTCAGTTGATTCTGTTATGAAAAAGTCAAATACTGAATTGGTCTCTCCCTATAGTGGTAGCAGTGAAGAATCAGCGGGCTTGAAATACACTTAG

mRNA sequence

ATGGGCTTTGTTAAACCCGCTAAAGACATTTGTTCGAATAAGTCTGTGGGCCCCACAAATTTTGATTCCTTTTTTAAAAATCAGGTACCCAAAGGGTCGGATAGGGAAAAAGAAAACAGAATGGCGCCTTCAATTACTGTGGTTCTGAAAATGCTGCCACCAACCCACCCTATTCAGATTTTAAACAGCCTCTCTATCAAAAAGTTTCAGTTAGCCGGTGCCGCTCAGTCCTCAACAAAGGTTGTTACCTCATTCAAGCTTAGACCAAGTAAAGGAAAGAAAAAAGGCAGTTCTCCGAAAATTCCCCTAAAGCATTTCATCAGAAAACAAAAATCTTTTGATAATGTCTGGACTGCACTGCTAAAGTCTAAATCACTTGTTGCTTGCTCTTTCAAAGCTACAAAAGAGGCTCCACAGCAGAACTTAATTATCAAGCCCTCTCTATCTGAGAATAACCCAAATCTCCTGGAGGCCTGCAGCTCCAAAGTTCGAATTGATACGCTTCAAAACAGGTCAGTTACAGCTCCCCCAGCTCCTAAACTCTTCAGTTACTCGAGTTTCACAGATCCTAACACTAAAATTATCTTATTACGAGGTTCTCCATGCCACTCAGTTGATTCTGTTATGAAAAAGTCAAATACTGAATTGGTCTCTCCCTATAGTGGTAGCAGTGAAGAATCAGCGGGCTTGAAATACACTTAG

Coding sequence (CDS)

ATGGGCTTTGTTAAACCCGCTAAAGACATTTGTTCGAATAAGTCTGTGGGCCCCACAAATTTTGATTCCTTTTTTAAAAATCAGGTACCCAAAGGGTCGGATAGGGAAAAAGAAAACAGAATGGCGCCTTCAATTACTGTGGTTCTGAAAATGCTGCCACCAACCCACCCTATTCAGATTTTAAACAGCCTCTCTATCAAAAAGTTTCAGTTAGCCGGTGCCGCTCAGTCCTCAACAAAGGTTGTTACCTCATTCAAGCTTAGACCAAGTAAAGGAAAGAAAAAAGGCAGTTCTCCGAAAATTCCCCTAAAGCATTTCATCAGAAAACAAAAATCTTTTGATAATGTCTGGACTGCACTGCTAAAGTCTAAATCACTTGTTGCTTGCTCTTTCAAAGCTACAAAAGAGGCTCCACAGCAGAACTTAATTATCAAGCCCTCTCTATCTGAGAATAACCCAAATCTCCTGGAGGCCTGCAGCTCCAAAGTTCGAATTGATACGCTTCAAAACAGGTCAGTTACAGCTCCCCCAGCTCCTAAACTCTTCAGTTACTCGAGTTTCACAGATCCTAACACTAAAATTATCTTATTACGAGGTTCTCCATGCCACTCAGTTGATTCTGTTATGAAAAAGTCAAATACTGAATTGGTCTCTCCCTATAGTGGTAGCAGTGAAGAATCAGCGGGCTTGAAATACACTTAG

Protein sequence

MGFVKPAKDICSNKSVGPTNFDSFFKNQVPKGSDREKENRMAPSITVVLKMLPPTHPIQILNSLSIKKFQLAGAAQSSTKVVTSFKLRPSKGKKKGSSPKIPLKHFIRKQKSFDNVWTALLKSKSLVACSFKATKEAPQQNLIIKPSLSENNPNLLEACSSKVRIDTLQNRSVTAPPAPKLFSYSSFTDPNTKIILLRGSPCHSVDSVMKKSNTELVSPYSGSSEESAGLKYT*
Homology
[Close]
BLAST of MELO3C024758 vs. NCBI nr
Match: gi|659098054|ref|XP_008449955.1| (PREDICTED: uncharacterized protein LOC103491685 [Cucumis melo])

HSP 1 Score: 67.4 bits (163), Expect = 3.8e-08
Identity = 38/79 (48.10%), Postives = 48/79 (60.76%), Query Frame = 1 

Query: 86  KLRPSKGKKKGSSPKIPLKHFIRKQKSFDNVWTALLKSKSLVACSFKATKEAPQQNLIIK 145
           +L PS   +     K  LKHFIRK+ SF+NVWTAL  SKS  ACSFK  ++  Q     +
Sbjct: 66  RLSPSSSARFNKLQKF-LKHFIRKKTSFNNVWTALFNSKSFGACSFKDQEKHFQGQQSFR 125

Query: 146 PSLSENNPNLLEACSSKVR 165
            S  + NP+LLE CSS V+
Sbjct: 126 SSFIDVNPDLLEFCSSLVQ 143

The following BLAST results are available for this feature:
BLAST of MELO3C024758 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659098054|ref|XP_008449955.1|3.8e-0848.10PREDICTED: uncharacterized protein LOC103491685 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C024758T1MELO3C024758T1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C024758Cucsa.073360Cucumber (Gy14) v1cgymeB072
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C024758Wax gourdmewgoB126
MELO3C024758Cucurbita maxima (Rimu)cmameB493
MELO3C024758Cucurbita maxima (Rimu)cmameB534
MELO3C024758Cucurbita moschata (Rifu)cmomeB483
MELO3C024758Cucurbita moschata (Rifu)cmomeB524
MELO3C024758Wild cucumber (PI 183967)cpimeB096
MELO3C024758Cucumber (Chinese Long) v2cumeB087
MELO3C024758Watermelon (Charleston Gray)mewcgB090
MELO3C024758Watermelon (97103) v1mewmB125
MELO3C024758Cucurbita pepo (Zucchini)cpemeB260
MELO3C024758Cucurbita pepo (Zucchini)cpemeB672
MELO3C024758Bottle gourd (USVL1VR-Ls)lsimeB053
MELO3C024758Cucumber (Gy14) v2cgybmeB083
MELO3C024758Silver-seed gourdcarmeB0935
MELO3C024758Silver-seed gourdcarmeB1022
MELO3C024758Cucumber (Chinese Long) v3cucmeB103
MELO3C024758Watermelon (97103) v2mewmbB092