MELO3C024755 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C024755
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	ATP-binding cassette, subfamily F, member 1
Location	chr11 : 7724905 .. 7725174 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAAAGCCACACATACTACTGCTGGATGAACCGACGAATCACTTGGACATGCAGAGTATTGATGCACTTGCTGATGCCTTAGATGAATTCACCGGCGGAGTTGTTCTGGTTAGTCATGATTCACGACTCATTTCACGTGTCTGCGAGGATGAAGAAAAAAGTGAAATTTGGGTAGTCGAAAATGGCACTGTGGAGTTTTTCCCTGGCACTTTCGAGGAATACAAGGAAGAATTGCAAAAGGAGATTAAAGCTGAGGTTGATGATTAG

mRNA sequence

ATGTCAAAGCCACACATACTACTGCTGGATGAACCGACGAATCACTTGGACATGCAGAGTATTGATGCACTTGCTGATGCCTTAGATGAATTCACCGGCGGAGTTGTTCTGGTTAGTCATGATTCACGACTCATTTCACGTGTCTGCGAGGATGAAGAAAAAAGTGAAATTTGGGTAGTCGAAAATGGCACTGTGGAGTTTTTCCCTGGCACTTTCGAGGAATACAAGGAAGAATTGCAAAAGGAGATTAAAGCTGAGGTTGATGATTAG

Coding sequence (CDS)

ATGTCAAAGCCACACATACTACTGCTGGATGAACCGACGAATCACTTGGACATGCAGAGTATTGATGCACTTGCTGATGCCTTAGATGAATTCACCGGCGGAGTTGTTCTGGTTAGTCATGATTCACGACTCATTTCACGTGTCTGCGAGGATGAAGAAAAAAGTGAAATTTGGGTAGTCGAAAATGGCACTGTGGAGTTTTTCCCTGGCACTTTCGAGGAATACAAGGAAGAATTGCAAAAGGAGATTAAAGCTGAGGTTGATGATTAG

Protein sequence

MSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCEDEEKSEIWVVENGTVEFFPGTFEEYKEELQKEIKAEVDD*

Homology

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BLAST of MELO3C024755 vs. Swiss-Prot
Match: AB4F_ARATH (ABC transporter F family member 4 OS=Arabidopsis thaliana GN=ABCF4 PE=2 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 2.9e-41
Identity = 81/89 (91.01%), Postives = 85/89 (95.51%), Query Frame = 1


Query: 1   MSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCEDEEKSEIWVV 60
           MSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVC +EEKS+IWVV
Sbjct: 635 MSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCAEEEKSQIWVV 694

Query: 61  ENGTVEFFPGTFEEYKEELQKEIKAEVDD 90
           E+GTV FFPGTFEEYKE+LQ+EIKAEVD+
Sbjct: 695 EDGTVNFFPGTFEEYKEDLQREIKAEVDE 723

HSP 2 Score: 53.5 bits (127), Expect = 1.4e-06
Identity = 30/89 (33.71%), Postives = 52/89 (58.43%), Query Frame = 1


Query: 3   KPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCEDEEKSEIWVVEN 62
           +P +LLLDEPTNHLD++++  L + L  +   +V+VSHD   ++ VC     +EI  + +
Sbjct: 337 QPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVC-----TEIIHLHD 396

Query: 63  GTVEFFPGTFEEYK---EELQKEIKAEVD 89
             + F+ G F+ ++   E+ +KE+  + D
Sbjct: 397 QNLHFYRGNFDGFESGYEQRRKEMNKKFD 420

[Close]

BLAST of MELO3C024755 vs. Swiss-Prot
Match: YJQ1_SCHPO (Uncharacterized ABC transporter ATP-binding protein C825.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC825.01 PE=1 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.2e-20
Identity = 49/89 (55.06%), Postives = 64/89 (71.91%), Query Frame = 1


Query: 1   MSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCEDEEKSEIWVV 60
           M++PHILLLDEPTN LD+ +IDALADAL+ F GGVV ++HD RLI +V E     EIW+V
Sbjct: 728 MTQPHILLLDEPTNALDIDTIDALADALNNFDGGVVFITHDFRLIDQVAE-----EIWIV 787

Query: 61  ENGTVEFFPGTFEEYKEELQKEIKAEVDD 90
           +NGTV+ F G   +YK  L+++I  E ++
Sbjct: 788 QNGTVKEFDGEIRDYKMMLKQQIAKEREE 811

HSP 2 Score: 40.8 bits (94), Expect = 9.2e-03
Identity = 20/51 (39.22%), Postives = 31/51 (60.78%), Query Frame = 1


Query: 3   KPHILLLDEPTNHLDMQSIDALADAL-DEFTGGVVLVS-HDSRLISRVCED 52
           KP +++LDEPTNHLD++++  L + L  E  G  +L++ H    ++ VC D
Sbjct: 438 KPTLMMLDEPTNHLDLEAVAWLEEYLTHEMEGHTLLITCHTQDTLNEVCTD 488

[Close]

BLAST of MELO3C024755 vs. Swiss-Prot
Match: ABCF4_DICDI (ABC transporter F family member 4 OS=Dictyostelium discoideum GN=abcF4 PE=3 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.8e-19
Identity = 45/83 (54.22%), Postives = 63/83 (75.90%), Query Frame = 1


Query: 2    SKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCEDEEKSEIWVV- 61
            ++PHILLLDEPTNHLD+ +I+ALA+ ++ FTGGVVL+SH+  LI+ + E     +IWVV 
Sbjct: 1058 AEPHILLLDEPTNHLDIDAIEALAEGINAFTGGVVLISHNQHLINLIAE-----QIWVVK 1117

Query: 62   ENGTVEFFPGTFEEYKEELQKEI 84
            ++GT+  +PGTF +YK E+ +EI
Sbjct: 1118 KDGTIYLYPGTFMDYKNEISREI 1135

HSP 2 Score: 43.9 bits (102), Expect = 1.1e-03
Identity = 20/84 (23.81%), Postives = 48/84 (57.14%), Query Frame = 1


Query: 3   KPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCEDEEKSEIWVVEN 62
           KP +LLLDEP+NHLD+ +   L   L+++   +++VSH++  ++ V ++     I  + +
Sbjct: 778 KPEVLLLDEPSNHLDLHACVWLEKYLNQWDRTLLVVSHEASFLNEVVDN-----IIYIHD 837

Query: 63  GTVEFFPGTFEEYKEELQKEIKAE 87
             ++ + G ++ + ++    ++++
Sbjct: 838 QKLDQYRGNYDAFMKQKSVNLRSK 856

[Close]

BLAST of MELO3C024755 vs. Swiss-Prot
Match: ABCF2_HUMAN (ATP-binding cassette sub-family F member 2 OS=Homo sapiens GN=ABCF2 PE=1 SV=2)

HSP 1 Score: 92.0 bits (227), Expect = 3.5e-18
Identity = 45/83 (54.22%), Postives = 58/83 (69.88%), Query Frame = 1


Query: 4   PHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCEDEEKSEIWVVENG 63
           PH+L LDEPTNHLD+++IDALADA++EF GG++LVSHD RLI +V +     EIWV E  
Sbjct: 535 PHMLFLDEPTNHLDIETIDALADAINEFEGGMMLVSHDFRLIQQVAQ-----EIWVCEKQ 594

Query: 64  TVEFFPGTFEEYKEELQKEIKAE 87
           T+  +PG    YKE L+ ++  E
Sbjct: 595 TITKWPGDILAYKEHLKSKLVDE 612

HSP 2 Score: 51.2 bits (121), Expect = 6.8e-06
Identity = 29/81 (35.80%), Postives = 45/81 (55.56%), Query Frame = 1


Query: 3   KPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCEDEEKSEIWVVEN 62
           +P +LLLDEPTNHLD+ +   L + L  F   +VLVSH    ++ VC     + I  + N
Sbjct: 246 RPFMLLLDEPTNHLDLDACVWLEEELKTFKRILVLVSHSQDFLNGVC-----TNIIHMHN 305

Query: 63  GTVEFFPGTFEEY-KEELQKE 83
             ++++ G +++Y K  L+ E
Sbjct: 306 KKLKYYTGNYDQYVKTRLELE 321

[Close]

BLAST of MELO3C024755 vs. Swiss-Prot
Match: ABCF2_MOUSE (ATP-binding cassette sub-family F member 2 OS=Mus musculus GN=Abcf2 PE=1 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 3.5e-18
Identity = 45/83 (54.22%), Postives = 58/83 (69.88%), Query Frame = 1


Query: 4   PHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCEDEEKSEIWVVENG 63
           PH+L LDEPTNHLD+++IDALADA++EF GG++LVSHD RLI +V +     EIWV E  
Sbjct: 540 PHMLFLDEPTNHLDIETIDALADAINEFEGGMMLVSHDFRLIQQVAQ-----EIWVCEKQ 599

Query: 64  TVEFFPGTFEEYKEELQKEIKAE 87
           T+  +PG    YKE L+ ++  E
Sbjct: 600 TITKWPGDILAYKEHLKSKLVDE 617

HSP 2 Score: 51.2 bits (121), Expect = 6.8e-06
Identity = 29/81 (35.80%), Postives = 45/81 (55.56%), Query Frame = 1


Query: 3   KPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCEDEEKSEIWVVEN 62
           +P +LLLDEPTNHLD+ +   L + L  F   +VLVSH    ++ VC     + I  + N
Sbjct: 251 RPFMLLLDEPTNHLDLDACVWLEEELKTFKRILVLVSHSQDFLNGVC-----TNIIHMHN 310

Query: 63  GTVEFFPGTFEEY-KEELQKE 83
             ++++ G +++Y K  L+ E
Sbjct: 311 KKLKYYTGNYDQYVKTRLELE 326

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BLAST of MELO3C024755 vs. TrEMBL
Match: A0A0A0LNE5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G431120 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 4.8e-43
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 1


Query: 1   MSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCEDEEKSEIWVV 60
           MSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCEDEEKSEIWVV
Sbjct: 638 MSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCEDEEKSEIWVV 697

Query: 61  ENGTVEFFPGTFEEYKEELQKEIKAEVDD 90
           ENGTVEFFPGTFEEYKEELQKEIKAEVDD
Sbjct: 698 ENGTVEFFPGTFEEYKEELQKEIKAEVDD 726

[Close]

BLAST of MELO3C024755 vs. TrEMBL
Match: A0A0A0LNE5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G431120 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 2.6e-04
Identity = 29/89 (32.58%), Postives = 55/89 (61.80%), Query Frame = 1


Query: 3   KPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCEDEEKSEIWVVEN 62
           +P +LLLDEPTNHLD++++  L + L  +   +V+VSHD   ++ VC     +EI  + +
Sbjct: 341 QPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNSVC-----NEIIHLHD 400

Query: 63  GTVEFFPGTFEEYK---EELQKEIKAEVD 89
             + F+ G F++++   E+ +KE+  + +
Sbjct: 401 FRLHFYRGNFDDFESGYEQRRKEMNKKFE 424

HSP 2 Score: 180.3 bits (456), Expect = 1.1e-42
Identity = 88/89 (98.88%), Postives = 89/89 (100.00%), Query Frame = 1


Query: 1   MSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCEDEEKSEIWVV 60
           MSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCEDEEKSEIWVV
Sbjct: 293 MSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCEDEEKSEIWVV 352

Query: 61  ENGTVEFFPGTFEEYKEELQKEIKAEVDD 90
           ENGTVEFFPGTFEEYKEELQK+IKAEVDD
Sbjct: 353 ENGTVEFFPGTFEEYKEELQKQIKAEVDD 381

[Close]

BLAST of MELO3C024755 vs. TrEMBL
Match: A0A067LJM7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16332 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 3.5e-41
Identity = 85/89 (95.51%), Postives = 88/89 (98.88%), Query Frame = 1


Query: 1   MSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCEDEEKSEIWVV 60
           MSKPHIL+LDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCEDEE+SEIWVV
Sbjct: 639 MSKPHILMLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCEDEERSEIWVV 698

Query: 61  ENGTVEFFPGTFEEYKEELQKEIKAEVDD 90
           ENGTVE FPGTFEEYKEELQ+EIKAEVDD
Sbjct: 699 ENGTVETFPGTFEEYKEELQREIKAEVDD 727

[Close]

BLAST of MELO3C024755 vs. TrEMBL
Match: A0A067LJM7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16332 PE=4 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 1.7e-03
Identity = 27/87 (31.03%), Postives = 51/87 (58.62%), Query Frame = 1


Query: 3   KPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCED-----EEKSEI 62
           +P +LLLDEPTNHLD++++  L + L  +   +V+VSHD   ++ VC +     + K  +
Sbjct: 342 QPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCNEIIHLHDLKLHV 401

Query: 63  WVVENGTVEFFPGTFEEYKEELQKEIK 85
           +    G  + F   +E+ ++E+ K+ +
Sbjct: 402 Y---RGNFDDFESGYEQRRKEMNKKFE 425

HSP 2 Score: 174.1 bits (440), Expect = 7.7e-41
Identity = 86/89 (96.63%), Postives = 87/89 (97.75%), Query Frame = 1


Query: 1   MSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCEDEEKSEIWVV 60
           MSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCEDEEKSEIWVV
Sbjct: 639 MSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCEDEEKSEIWVV 698

Query: 61  ENGTVEFFPGTFEEYKEELQKEIKAEVDD 90
           E+GTV  FPGTFEEYKEELQKEIKAEVDD
Sbjct: 699 EDGTVTAFPGTFEEYKEELQKEIKAEVDD 727

[Close]

BLAST of MELO3C024755 vs. TrEMBL
Match: U5FZN3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s26100g PE=4 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 1.7e-03
Identity = 28/83 (33.73%), Postives = 51/83 (61.45%), Query Frame = 1


Query: 3   KPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCEDEEKSEIWVVEN 62
           +P +LLLDEPTNHLD++++  L + L  +   +V+VSHD   ++ VC D     I  + +
Sbjct: 342 QPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCND-----IIHLHD 401

Query: 63  GTVEFFPGTFEEYK---EELQKE 83
             ++ + G F++++   E+ +KE
Sbjct: 402 QKLDSYRGNFDDFEVGYEQRRKE 419

HSP 2 Score: 172.2 bits (435), Expect = 2.9e-40
Identity = 84/89 (94.38%), Postives = 87/89 (97.75%), Query Frame = 1


Query: 1   MSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCEDEEKSEIWVV 60
           MSKPHIL+LDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCEDEE+SEIWVV
Sbjct: 639 MSKPHILMLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCEDEERSEIWVV 698

Query: 61  ENGTVEFFPGTFEEYKEELQKEIKAEVDD 90
           ENGTV  FPGTFEEYKEELQ+EIKAEVDD
Sbjct: 699 ENGTVMNFPGTFEEYKEELQREIKAEVDD 727

[Close]

BLAST of MELO3C024755 vs. TAIR10
Match: AT3G54540.1 (AT3G54540.1 general control non-repressible 4)

HSP 1 Score: 168.7 bits (426), Expect = 1.6e-42
Identity = 81/89 (91.01%), Postives = 85/89 (95.51%), Query Frame = 1


Query: 1   MSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCEDEEKSEIWVV 60
           MSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVC +EEKS+IWVV
Sbjct: 635 MSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCAEEEKSQIWVV 694

Query: 61  ENGTVEFFPGTFEEYKEELQKEIKAEVDD 90
           E+GTV FFPGTFEEYKE+LQ+EIKAEVD+
Sbjct: 695 EDGTVNFFPGTFEEYKEDLQREIKAEVDE 723

HSP 2 Score: 53.5 bits (127), Expect = 7.7e-08
Identity = 30/89 (33.71%), Postives = 52/89 (58.43%), Query Frame = 1


Query: 3   KPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCEDEEKSEIWVVEN 62
           +P +LLLDEPTNHLD++++  L + L  +   +V+VSHD   ++ VC     +EI  + +
Sbjct: 337 QPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVC-----TEIIHLHD 396

Query: 63  GTVEFFPGTFEEYK---EELQKEIKAEVD 89
             + F+ G F+ ++   E+ +KE+  + D
Sbjct: 397 QNLHFYRGNFDGFESGYEQRRKEMNKKFD 420

[Close]

BLAST of MELO3C024755 vs. TAIR10
Match: AT1G64550.1 (AT1G64550.1 general control non-repressible 3)

HSP 1 Score: 80.9 bits (198), Expect = 4.5e-16
Identity = 39/78 (50.00%), Postives = 51/78 (65.38%), Query Frame = 1


Query: 3   KPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCEDEEKSEIWVVEN 62
           KPH+LLLDEP+NHLD+ +++AL   L  F GG+ +VSHD  LIS   +     E+WVV +
Sbjct: 640 KPHLLLLDEPSNHLDLDAVEALIQGLVLFQGGICMVSHDEHLISGSVD-----ELWVVSD 699

Query: 63  GTVEFFPGTFEEYKEELQ 81
           G +  F GTF +YK+ LQ
Sbjct: 700 GRIAPFHGTFHDYKKLLQ 712

HSP 2 Score: 44.7 bits (104), Expect = 3.6e-05
Identity = 23/82 (28.05%), Postives = 44/82 (53.66%), Query Frame = 1


Query: 3   KPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCEDEEKSEIWVVEN 62
           +P +LLLDEPTNHLD+ ++  L   L ++    ++VSH    ++ V  D     I  ++N
Sbjct: 357 EPDLLLLDEPTNHLDLHAVLWLETYLTKWPKTFIVVSHAREFLNTVVTD-----IIHLQN 416

Query: 63  GTVEFFPGTFEEYKEELQKEIK 85
             +  + G ++ ++   ++++K
Sbjct: 417 QKLSTYKGNYDIFERTREEQVK 433

[Close]

BLAST of MELO3C024755 vs. TAIR10
Match: AT5G60790.1 (AT5G60790.1 ABC transporter family protein)

HSP 1 Score: 79.7 bits (195), Expect = 1.0e-15
Identity = 42/87 (48.28%), Postives = 60/87 (68.97%), Query Frame = 1


Query: 3   KPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCEDEEKSEIWVVEN 62
           +P++LLLDEPTNHLD+++ID+LA+AL+E+ GG+VLVSHD RLI++V       EIWV E 
Sbjct: 516 QPNMLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAH-----EIWVCEK 575

Query: 63  GTVEFFPGTFEEYKEELQKEIKAEVDD 90
             +  + G   ++K  L  + KA ++D
Sbjct: 576 QCITKWNGDIMDFKRHL--KAKAGLED 595

HSP 2 Score: 51.6 bits (122), Expect = 2.9e-07
Identity = 26/72 (36.11%), Postives = 43/72 (59.72%), Query Frame = 1


Query: 4   PHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCEDEEKSEIWVVENG 63
           P ILLLDEPTNHLD+++   L ++L  F   +V+VSH    ++ VC     + I  +++ 
Sbjct: 231 PTILLLDEPTNHLDLEACVWLEESLKNFDRILVVVSHSQDFLNGVC-----TNIIHMQSK 290

Query: 64  TVEFFPGTFEEY 76
            ++++ G F++Y
Sbjct: 291 QLKYYTGNFDQY 297

[Close]

BLAST of MELO3C024755 vs. TAIR10
Match: AT5G64840.1 (AT5G64840.1 general control non-repressible 5)

HSP 1 Score: 57.4 bits (137), Expect = 5.3e-09
Identity = 32/89 (35.96%), Postives = 50/89 (56.18%), Query Frame = 1


Query: 6   ILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCEDEEKSEIWVVENGTV 65
           +L+LDEPTNHLD+ S + L +A++E+ G V+ VSHD   I ++      + +  VE+G +
Sbjct: 564 LLVLDEPTNHLDIPSKEMLEEAINEYQGTVIAVSHDRYFIKQIV-----NRVIEVEDGCL 623

Query: 66  EFFPGTFEEYKE--------ELQKEIKAE 87
           E + G +  Y E        EL++E + E
Sbjct: 624 EDYAGDYNYYLEKNLDARTKELEREAELE 647

HSP 2 Score: 51.6 bits (122), Expect = 2.9e-07
Identity = 26/75 (34.67%), Postives = 40/75 (53.33%), Query Frame = 1


Query: 1   MSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCEDEEKSEIWVV 60
           +  P +LLLDEPTNHLD+ +I+ L   L +    +V++SHD   + ++C     ++I   
Sbjct: 275 LQDPDLLLLDEPTNHLDLDTIEWLEGYLQKQDVPMVIISHDRAFLDQLC-----TKIVET 334

Query: 61  ENGTVEFFPGTFEEY 76
           E G    F G + +Y
Sbjct: 335 EMGVSRTFEGNYSQY 344

[Close]

BLAST of MELO3C024755 vs. TAIR10
Match: AT5G09930.1 (AT5G09930.1 ABC transporter family protein)

HSP 1 Score: 52.4 bits (124), Expect = 1.7e-07
Identity = 33/102 (32.35%), Postives = 49/102 (48.04%), Query Frame = 1


Query: 1   MSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCEDEEKSEIWVV 60
           +  P +LLLDEPTNHLD+ +I+ L   L +    +V++SHD   + ++C     ++I   
Sbjct: 261 LQNPDLLLLDEPTNHLDLDTIEWLEGYLIKQDVPMVIISHDRAFLDQLC-----TKIVET 320

Query: 61  ENGTVEFFPGTFEEYK--------------EELQKEIKAEVD 89
           E G    F G + +Y               E+ QKEI+A  D
Sbjct: 321 EMGVSRTFDGNYSQYVISKAELVEAQYAAWEKQQKEIEATKD 357

HSP 2 Score: 51.6 bits (122), Expect = 2.9e-07
Identity = 31/86 (36.05%), Postives = 49/86 (56.98%), Query Frame = 1


Query: 1   MSKPH-ILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCEDEEKSEIWV 60
           M KP  +L+LDEPTNHLD+ S + L +A++E+ G V+ VSHD   I ++      + +  
Sbjct: 544 MVKPSTLLVLDEPTNHLDIPSKEMLEEAINEYKGTVITVSHDRYFIKQIV-----NRVIE 603

Query: 61  VENGTVEFFPGTFEEYKEELQKEIKA 86
           V +G +  + G   +Y   L+K ++A
Sbjct: 604 VRDGGLMDYAG---DYNYFLEKNVEA 621

[Close]

BLAST of MELO3C024755 vs. NCBI nr
Match: gi|778673720|ref|XP_011650048.1| (PREDICTED: ABC transporter F family member 4-like [Cucumis sativus])

HSP 1 Score: 181.4 bits (459), Expect = 6.9e-43
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 1


Query: 1   MSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCEDEEKSEIWVV 60
           MSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCEDEEKSEIWVV
Sbjct: 638 MSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCEDEEKSEIWVV 697

Query: 61  ENGTVEFFPGTFEEYKEELQKEIKAEVDD 90
           ENGTVEFFPGTFEEYKEELQKEIKAEVDD
Sbjct: 698 ENGTVEFFPGTFEEYKEELQKEIKAEVDD 726

[Close]

BLAST of MELO3C024755 vs. NCBI nr
Match: gi|778673720|ref|XP_011650048.1| (PREDICTED: ABC transporter F family member 4-like [Cucumis sativus])

HSP 1 Score: 52.8 bits (125), Expect = 3.7e-04
Identity = 29/89 (32.58%), Postives = 55/89 (61.80%), Query Frame = 1


Query: 3   KPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCEDEEKSEIWVVEN 62
           +P +LLLDEPTNHLD++++  L + L  +   +V+VSHD   ++ VC     +EI  + +
Sbjct: 341 QPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNSVC-----NEIIHLHD 400

Query: 63  GTVEFFPGTFEEYK---EELQKEIKAEVD 89
             + F+ G F++++   E+ +KE+  + +
Sbjct: 401 FRLHFYRGNFDDFESGYEQRRKEMNKKFE 424

HSP 2 Score: 181.4 bits (459), Expect = 6.9e-43
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 1


Query: 1   MSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCEDEEKSEIWVV 60
           MSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCEDEEKSEIWVV
Sbjct: 638 MSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCEDEEKSEIWVV 697

Query: 61  ENGTVEFFPGTFEEYKEELQKEIKAEVDD 90
           ENGTVEFFPGTFEEYKEELQKEIKAEVDD
Sbjct: 698 ENGTVEFFPGTFEEYKEELQKEIKAEVDD 726

[Close]

BLAST of MELO3C024755 vs. NCBI nr
Match: gi|659125679|ref|XP_008462810.1| (PREDICTED: ABC transporter F family member 4-like [Cucumis melo])

HSP 1 Score: 52.8 bits (125), Expect = 3.7e-04
Identity = 29/89 (32.58%), Postives = 55/89 (61.80%), Query Frame = 1


Query: 3   KPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCEDEEKSEIWVVEN 62
           +P +LLLDEPTNHLD++++  L + L  +   +V+VSHD   ++ VC     +EI  + +
Sbjct: 341 QPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNSVC-----NEIIHLHD 400

Query: 63  GTVEFFPGTFEEYK---EELQKEIKAEVD 89
             + F+ G F++++   E+ +KE+  + +
Sbjct: 401 FRLHFYRGNFDDFESGYEQRRKEMNKKFE 424

HSP 2 Score: 180.3 bits (456), Expect = 1.5e-42
Identity = 88/89 (98.88%), Postives = 89/89 (100.00%), Query Frame = 1


Query: 1   MSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCEDEEKSEIWVV 60
           MSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCEDEEKSEIWVV
Sbjct: 638 MSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCEDEEKSEIWVV 697

Query: 61  ENGTVEFFPGTFEEYKEELQKEIKAEVDD 90
           ENGTVEFFPGTFEEYKEELQK+IKAEVDD
Sbjct: 698 ENGTVEFFPGTFEEYKEELQKQIKAEVDD 726

[Close]

BLAST of MELO3C024755 vs. NCBI nr
Match: gi|778694614|ref|XP_011653838.1| (PREDICTED: ABC transporter F family member 4 [Cucumis sativus])

HSP 1 Score: 52.8 bits (125), Expect = 3.7e-04
Identity = 29/89 (32.58%), Postives = 55/89 (61.80%), Query Frame = 1


Query: 3   KPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCEDEEKSEIWVVEN 62
           +P +LLLDEPTNHLD++++  L + L  +   +V+VSHD   ++ VC     +EI  + +
Sbjct: 341 QPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNSVC-----NEIIHLHD 400

Query: 63  GTVEFFPGTFEEYK---EELQKEIKAEVD 89
             + F+ G F++++   E+ +KE+  + +
Sbjct: 401 FRLHFYRGNFDDFESGYEQRRKEMSKKFE 424

HSP 2 Score: 180.3 bits (456), Expect = 1.5e-42
Identity = 88/89 (98.88%), Postives = 89/89 (100.00%), Query Frame = 1


Query: 1   MSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCEDEEKSEIWVV 60
           MSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCEDEEKSEIWVV
Sbjct: 293 MSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCEDEEKSEIWVV 352

Query: 61  ENGTVEFFPGTFEEYKEELQKEIKAEVDD 90
           ENGTVEFFPGTFEEYKEELQK+IKAEVDD
Sbjct: 353 ENGTVEFFPGTFEEYKEELQKQIKAEVDD 381

[Close]

BLAST of MELO3C024755 vs. NCBI nr
Match: gi|802550707|ref|XP_012093127.1| (PREDICTED: ABC transporter F family member 4 [Jatropha curcas])

HSP 1 Score: 175.3 bits (443), Expect = 5.0e-41
Identity = 85/89 (95.51%), Postives = 88/89 (98.88%), Query Frame = 1


Query: 1   MSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCEDEEKSEIWVV 60
           MSKPHIL+LDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCEDEE+SEIWVV
Sbjct: 639 MSKPHILMLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCEDEERSEIWVV 698

Query: 61  ENGTVEFFPGTFEEYKEELQKEIKAEVDD 90
           ENGTVE FPGTFEEYKEELQ+EIKAEVDD
Sbjct: 699 ENGTVETFPGTFEEYKEELQREIKAEVDD 727

The following BLAST results are available for this feature:

BLAST of MELO3C024755 vs. Swiss-Prot


Match Name	E-value	Identity	Description
AB4F_ARATH	2.9e-41	91.01	ABC transporter F family member 4 OS=Arabidopsis thaliana GN=ABCF4 PE=2 SV=1	[more]
YJQ1_SCHPO	2.2e-20	55.06	Uncharacterized ABC transporter ATP-binding protein C825.01 OS=Schizosaccharomyc...	[more]
ABCF4_DICDI	1.8e-19	54.22	ABC transporter F family member 4 OS=Dictyostelium discoideum GN=abcF4 PE=3 SV=1	[more]
ABCF2_HUMAN	3.5e-18	54.22	ATP-binding cassette sub-family F member 2 OS=Homo sapiens GN=ABCF2 PE=1 SV=2	[more]
ABCF2_MOUSE	3.5e-18	54.22	ATP-binding cassette sub-family F member 2 OS=Mus musculus GN=Abcf2 PE=1 SV=1	[more]

BLAST of MELO3C024755 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LNE5_CUCSA	4.8e-43	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G431120 PE=4 SV=1	[more]
A0A0A0LNE5_CUCSA	2.6e-04	32.58	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G431120 PE=4 SV=1	[more]
A0A067LJM7_JATCU	3.5e-41	95.51	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16332 PE=4 SV=1	[more]
A0A067LJM7_JATCU	1.7e-03	31.03	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16332 PE=4 SV=1	[more]
U5FZN3_POPTR	1.7e-03	33.73	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s26100g PE=4 SV=1	[more]

BLAST of MELO3C024755 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G54540.1	1.6e-42	91.01	general control non-repressible 4	[more]
AT1G64550.1	4.5e-16	50.00	general control non-repressible 3	[more]
AT5G60790.1	1.0e-15	48.28	ABC transporter family protein	[more]
AT5G64840.1	5.3e-09	35.96	general control non-repressible 5	[more]
AT5G09930.1	1.7e-07	32.35	ABC transporter family protein	[more]

BLAST of MELO3C024755 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778673720\|ref\|XP_011650048.1\|	6.9e-43	100.00	PREDICTED: ABC transporter F family member 4-like [Cucumis sativus]	[more]
gi\|778673720\|ref\|XP_011650048.1\|	3.7e-04	32.58	PREDICTED: ABC transporter F family member 4-like [Cucumis sativus]	[more]
gi\|659125679\|ref\|XP_008462810.1\|	3.7e-04	32.58	PREDICTED: ABC transporter F family member 4-like [Cucumis melo]	[more]
gi\|778694614\|ref\|XP_011653838.1\|	3.7e-04	32.58	PREDICTED: ABC transporter F family member 4 [Cucumis sativus]	[more]
gi\|802550707\|ref\|XP_012093127.1\|	5.0e-41	95.51	PREDICTED: ABC transporter F family member 4 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR027417	P-loop_NTPase

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
biological_process	GO:0015716	organic phosphonate transport
biological_process	GO:0015748	organophosphate ester transport
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0015416	ATPase-coupled organic phosphonate transmembrane transporter activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATPase activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU61964	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C024755T1	MELO3C024755T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU61964	MU61964	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	G3DSA:3.40.50.300		coord: 2..81 score: 8.3
IPR027417	P-loop containing nucleoside triphosphate hydrolase	unknown	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 2..81 score: 4.74
None	No IPR available	PANTHER	PTHR19211	ATP-BINDING TRANSPORT PROTEIN-RELATED	coord: 1..89 score: 9.0
None	No IPR available	PANTHER	PTHR19211:SF57	ABC TRANSPORTER F FAMILY MEMBER 4	coord: 1..89 score: 9.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C024755	CSPI02G27280	Wild cucumber (PI 183967)	cpimeB096
MELO3C024755	CsGy2G026730	Cucumber (Gy14) v2	cgybmeB083
MELO3C024755	CsaV3_2G035850	Cucumber (Chinese Long) v3	cucmeB103

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C024755	Watermelon (97103) v2	mewmbB092
MELO3C024755	Wax gourd	mewgoB126
MELO3C024755	Cucurbita maxima (Rimu)	cmameB493
MELO3C024755	Cucurbita maxima (Rimu)	cmameB534
MELO3C024755	Cucurbita moschata (Rifu)	cmomeB483
MELO3C024755	Cucurbita moschata (Rifu)	cmomeB524
MELO3C024755	Cucumber (Chinese Long) v2	cumeB087
MELO3C024755	Watermelon (Charleston Gray)	mewcgB090
MELO3C024755	Watermelon (97103) v1	mewmB125
MELO3C024755	Cucurbita pepo (Zucchini)	cpemeB260
MELO3C024755	Cucurbita pepo (Zucchini)	cpemeB672
MELO3C024755	Bottle gourd (USVL1VR-Ls)	lsimeB053
MELO3C024755	Silver-seed gourd	carmeB0935
MELO3C024755	Silver-seed gourd	carmeB1022