MELO3C024752 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C024752
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionTransposon Ty1-PL Gag-Pol polyprotein
Locationchr11 : 7673173 .. 7673451 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGAAAACCAACGCTCATCTCTCTCTCGAGAAGAAAACCAGTACCTTCACGCAAAGAATTCAATTATGACCTTCATCGTTGGAGCTAAATCTGAGGCAGATCTCCAAGCGGTCATGGAAACAGTCATCCACACCATTTTCAATGACAACAAGGAGGATAACCCTGAAAATACAAGAATTTCTTTAGATTCATCCATCAACGATATCAATTTTGATAATGATCCATATTACAACTTTGATATTTTCGATCTGTATTTAGATTCCCAACCAGGATGA

mRNA sequence

ATGGTTGAAAACCAACGCTCATCTCTCTCTCGAGAAGAAAACCAGTACCTTCACGCAAAGAATTCAATTATGACCTTCATCGTTGGAGCTAAATCTGAGGCAGATCTCCAAGCGGTCATGGAAACAGTCATCCACACCATTTTCAATGACAACAAGGAGGATAACCCTGAAAATACAAGAATTTCTTTAGATTCATCCATCAACGATATCAATTTTGATAATGATCCATATTACAACTTTGATATTTTCGATCTGTATTTAGATTCCCAACCAGGATGA

Coding sequence (CDS)

ATGGTTGAAAACCAACGCTCATCTCTCTCTCGAGAAGAAAACCAGTACCTTCACGCAAAGAATTCAATTATGACCTTCATCGTTGGAGCTAAATCTGAGGCAGATCTCCAAGCGGTCATGGAAACAGTCATCCACACCATTTTCAATGACAACAAGGAGGATAACCCTGAAAATACAAGAATTTCTTTAGATTCATCCATCAACGATATCAATTTTGATAATGATCCATATTACAACTTTGATATTTTCGATCTGTATTTAGATTCCCAACCAGGATGA

Protein sequence

MVENQRSSLSREENQYLHAKNSIMTFIVGAKSEADLQAVMETVIHTIFNDNKEDNPENTRISLDSSINDINFDNDPYYNFDIFDLYLDSQPG*
Homology
[Close]
BLAST of MELO3C024752 vs. TrEMBL
Match: A0A0A0KXT5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G097660 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.2e-23
Identity = 57/78 (73.08%), Postives = 67/78 (85.90%), Query Frame = 1 

Query: 12  EENQYLHAKNSIMTFIVGAKSEADLQAVMETVIHTIFNDNKEDNPENTRISLDSSINDIN 71
           EE+Q+L  KNSIMTFI GAKSEADLQ VMETVIHTI++D+KE++ E+TRIS +S  NDI+
Sbjct: 62  EEDQFLLRKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKENDVEDTRISSNSFANDID 121

Query: 72  FDNDPYYNFDIFDLYLDS 90
           FDNDPYYNFDI D Y DS
Sbjct: 122 FDNDPYYNFDISDPYFDS 139

[Close]
BLAST of MELO3C024752 vs. NCBI nr
Match: gi|700198501|gb|KGN53659.1| (hypothetical protein Csa_4G097660 [Cucumis sativus])

HSP 1 Score: 117.1 bits (292), Expect = 1.7e-23
Identity = 57/78 (73.08%), Postives = 67/78 (85.90%), Query Frame = 1 

Query: 12  EENQYLHAKNSIMTFIVGAKSEADLQAVMETVIHTIFNDNKEDNPENTRISLDSSINDIN 71
           EE+Q+L  KNSIMTFI GAKSEADLQ VMETVIHTI++D+KE++ E+TRIS +S  NDI+
Sbjct: 62  EEDQFLLRKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKENDVEDTRISSNSFANDID 121

Query: 72  FDNDPYYNFDIFDLYLDS 90
           FDNDPYYNFDI D Y DS
Sbjct: 122 FDNDPYYNFDISDPYFDS 139

The following BLAST results are available for this feature:
BLAST of MELO3C024752 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KXT5_CUCSA1.2e-2373.08Uncharacterized protein OS=Cucumis sativus GN=Csa_4G097660 PE=4 SV=1[more]
BLAST of MELO3C024752 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198501|gb|KGN53659.1|1.7e-2373.08hypothetical protein Csa_4G097660 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C024752T1MELO3C024752T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C024752Bottle gourd (USVL1VR-Ls)lsimeB053
MELO3C024752Cucumber (Gy14) v2cgybmeB083
MELO3C024752Silver-seed gourdcarmeB0935
MELO3C024752Silver-seed gourdcarmeB1022
MELO3C024752Cucumber (Chinese Long) v3cucmeB103
MELO3C024752Watermelon (97103) v2mewmbB092
MELO3C024752Wax gourdmewgoB126
MELO3C024752Cucumber (Gy14) v1cgymeB440
MELO3C024752Cucurbita maxima (Rimu)cmameB493
MELO3C024752Cucurbita maxima (Rimu)cmameB534
MELO3C024752Cucurbita moschata (Rifu)cmomeB483
MELO3C024752Cucurbita moschata (Rifu)cmomeB524
MELO3C024752Wild cucumber (PI 183967)cpimeB096
MELO3C024752Cucumber (Chinese Long) v2cumeB087
MELO3C024752Watermelon (Charleston Gray)mewcgB090
MELO3C024752Watermelon (97103) v1mewmB125
MELO3C024752Cucurbita pepo (Zucchini)cpemeB260
MELO3C024752Cucurbita pepo (Zucchini)cpemeB672