MELO3C024738 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C024738
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionTransmembrane emp24 domain-containing protein 10
Locationchr11 : 7353382 .. 7356408 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCTCAAACTAACCTAAACTATGGCAGCCACGAACAATTTTCCATCTCCACGGCAACCACGAACAATTTTCCATCTCCACGGCAACCACAAACGATGAACGACGACAAAATGACGACAACCATTTCCATTTTCCATCTCCATGGCAACCACAAACGACAAATGATGACAACCATCCCCATTTTCCATCTCCACGGTAGCTATCTCCACGGTAGCCATGTTCAATTATTTTTCATTTAAACCCTATCTCACGTTTAGTCGTCCCCTCCCTCCCATTACCATGCTACCCTCAGCTGCCGCAGTCTCAGCCTTCCGATAAGATTGCAGACGTCTCCCATTCGTCTCACATTCTATATCTTCTTGCAAACATTGGTTAGTGATTGGTTCATTTGATTTTTAGATGGAACCGGACAAAATACATGAAATAGAAGACCTTGAGAAGAAGAAGAAGAAGGAAGAAAAGGTTTCTTTCCCATTTCTTATTTATCTTTGATTGTATTGCTTATGTCTACGTCGATACGTGTATGAAGGATGCATTTTTTTGGCAGTTTGGTATAGTGTTATTGCTATTATTTTGTTTTATTTCAATTGATTGTTTGGTCCTACTTCTATCCAATTGAAGGGAATTTTATGTTTTTTTTTTTTTGAATTCATTGTCATTTCTTGTAGAACTTGTTCCGCTCCGTAGTTGCATTGTTCTAGAAGTTGAATTCTTCTAGTTTTATTGTTTATCTTCCAGGGGAAATGTGCCTAAAAACTATTCTACCGAGATTTATTTCTGAAAAAACTTGCGAATTGATTCATTCATAGTCTAATGGATGAATAATAATTCTCAAGAACTCCCAAATAACATTAATTCTTGTTGTGCCAAAAGAAATCTATTAGTTGTTTGTTAGTTAAAAAGTTTCATTATCTCATTCAAAATACTTGGAACTTCTTTTTACGTAGTTTTGGACTTCTTTAATCACTTTTCAGCTATGACTCAAGTCATTCTCGGTAAGTTTATATTAAGACTTTGTTTCGATCAATCAATTAAACATTACACATTCACTATAAGAAATATGGCCTATGTGTTTTGGAATCTACATGAACCGATTTGAAACCAAGTACGTTTTTGTGAACTCGTCAATTCAATAACTTAGCTATGCTTTGGTTCTTAAGAATTTGTTTACTTAAGACTTTGAGGGATGAGTTTTGTTGATGTATTGAAGCAAGAGAAATTATATGCGGTAAGGTAGGTGTTTTGTATTATAATATAGAAATCATAATATAGTAGGCGTTTATGAATCATGCGTGTGTTTTCTGTAGGCGTTTTGTATTTATGTGTTGCCTGTAATATGTGTTGTTTTGTTTAATACATACATACATAATTTTTTTGACAAAAGGAGATTTATCTAAGGCCCTTACAGTAAGTTCTCATTTTTCACACTTATGAATTGATGTTGGTTTCTATCTCTCTCTCCCAGGATGGCTTATAACTTTGTTGGTGTGCCAATAGATGGCTGGGCTCAGTGTAGTTAATATTTCAAAGCCAACTTTGTGTTCTTTTTTGGGCAAGTTTCTCAATTTATTCAATTCTCATATGGGTATTCTCACATATTCTCACATAACTGCCAATTCTATTCAAGAAAAGATGTACTATCTTCATGAAAGGTAAAACAGAATAGTAAGGTTGTGTTTTTTTTAACTTTTCAAGTGATTAATTTTTTTTTGAAAAGAAGGCATTTTAGAAAGTTAAAAAAAGTGAATTTTGTTATAGTTCTCTATGTTGGTCTGAAAATTTTGAACAATGTGTGGTGGCAGGGAGGAAGAGATGCAAAATCTGAACAGAAGTACAAACACAAAGATGGCATGATTGAGTTTGCTCTCCCTTTTGTTTACTTATTAGTGGCGGGATTGCAAATATGGCACTTAAAGACCTTTTTTGTTAAAAAAAAAATAGCAATTATCTGTACTTACATTGTGTATTGGTATCCCCCTTACTATAAACAGAAGCCAAATTTTTTCGATCCATGGAGCCTAGTTAGTTCTTCTAGTTTTGGCATTTCATGCAATGGCATTCACTTTGGGATACTGGGCATCGAAAATTTCAATCATAAGGTAAAATTTATATCTCTTTACTTAATATCTCATCTATTTTGATAAGCTTTGAGGCTTAGATGATCTTAGGTTAGAATTCACACCCTCAATCTTTAGCTTTGATATACATTCATATGTGCAATCCATTAAAAAGAAAGAAAGGTGTATAAACATATGAGTGATGGAATGCATCAATCGAGCATGAATATATTTGGTAGAAGCTTATATTGCAATCCTACTACATATCCCAAAGTGAGGAACTTCCCCAACAAAACTTCTTCCACCTTTGGACAAACTTTTGTATATAAGGTATCATATTACTCATTAAAAGGTTATTAAGTTTCTTGTTTTTTGCTATAATTTCAATTGCTGTCATAAGGTTCTATTAGTTGATGAACTCCCTTTTTAGATATATATATATCGGTTCTTTGATGCTTACGAAGAAAGAAAGTTTATGCTTGTATGGGTTTCCAAATGAAGTATGGGAAGTTAATCTACTTTGTTTTATATATTTTGGTGCGAGATTTGGATGAAGAAATGCTACGTAGTTGTTTTTTGTTTAGGTTTGTTCTCAAAAAGAATTTTTTTAACCTTTATAAACAAAATTGTAATGCATAGAAGATAATATATATATGTTATTCAATGAGATATTAAATGTATAGTTCTATGGTTTATTTGATTGATTTTCAAGTATTTGCTATCTTCCTTATGCAGAAAAATTTCACTCTGGCATTGGAAGGTGTCCCAATATTTGGACTCCACAACAGAACAGCAACGTATCGTTTTGTCACTTTGGTTGATGTAAGTTTGACTTCATATTTGGATATTTTTTACTTTTATAACCTCAATTTACATGGAAGTTTGTTACTTTTGTGACTTTAAGTCGTTTGCTAGAACCTTTGAACCCCAGTTTAATGAATATCTATTTGCTAGAACTTTGAAAATCGCCT

mRNA sequence

ATCTCAAACTAACCTAAACTATGGCAGCCACGAACAATTTTCCATCTCCACGGCAACCACGAACAATTTTCCATCTCCACGGCAACCACAAACGATGAACGACGACAAAATGACGACAACCATTTCCATTTTCCATCTCCATGGCAACCACAAACGACAAATGATGACAACCATCCCCATTTTCCATCTCCACGGTAGCTATCTCCACGGTAGCCATGTTCAATTATTTTTCATTTAAACCCTATCTCACGTTTAGTCGTCCCCTCCCTCCCATTACCATGCTACCCTCAGCTGCCGCAGTCTCAGCCTTCCGATAAGATTGCAGACGTCTCCCATTCGTCTCACATTCTATATCTTCTTGCAAACATTGGTTAGTGATTGGTTCATTTGATTTTTAGATGGAACCGGACAAAATACATGAAATAGAAGACCTTGAGAAGAAGAAGAAGAAGGAAGAAAAGGATGGCTTATAACTTTGTTGGTGTGCCAATAGATGGCTGGGCTCAGTGTAGTTAATATTTCAAAGCCAACTTTGTGTTCTTTTTTGGGCAAGTTTCTCAATTTATTCAATTCTCATATGGGTATTCTCACATATTCTCACATAACTGCCAATTCTATTCAAGAAAAGATGTACTATCTTCATGAAAGGTAAAACAGAATAGTAAGGTTGTGTTTTTTTTAACTTTTCAAGTGATTAATTTTTTTTTGAAAAGAAGGCATTTTAGAAAGTTAAAAAAAGTGAATTTTGTTATAGTTCTCTATGTTGGTCTGAAAATTTTGAACAATGTGTGGTGGCAGGGAGGAAGAGATGCAAAATCTGAACAGAAGTACAAACACAAAGATGGCATGATTGAGTTTGCTCTCCCTTTTGTTTACTTATTAGTGGCGGGATTGCAAATATGGCACTTAAAGACCTTTTTTGTTAAAAAAAAAATAGCAATTATCTGTACTTACATTGTGTATTGGTATCCCCCTTACTATAAACAGAAGCCAAATTTTTTCGATCCATGGAGCCTAGTTAGTTCTTCTAGTTTTGGCATTTCATGCAATGGCATTCACTTTGGGATACTGGGCATCGAAAATTTCAATCATAAGAAAAATTTCACTCTGGCATTGGAAGGTGTCCCAATATTTGGACTCCACAACAGAACAGCAACGTATCGTTTTGTCACTTTGGTTGATGTAAGTTTGACTTCATATTTGGATATTTTTTACTTTTATAACCTCAATTTACATGGAAGTTTGTTACTTTTGTGACTTTAAGTCGTTTGCTAGAACCTTTGAACCCCAGTTTAATGAATATCTATTTGCTAGAACTTTGAAAATCGCCT

Coding sequence (CDS)

ATGATTGAGTTTGCTCTCCCTTTTGTTTACTTATTAGTGGCGGGATTGCAAATATGGCACTTAAAGACCTTTTTTGTTAAAAAAAAAATAGCAATTATCTGTACTTACATTGTGTATTGGTATCCCCCTTACTATAAACAGAAGCCAAATTTTTTCGATCCATGGAGCCTAGTTAGTTCTTCTAGTTTTGGCATTTCATGCAATGGCATTCACTTTGGGATACTGGGCATCGAAAATTTCAATCATAAGAAAAATTTCACTCTGGCATTGGAAGGTGTCCCAATATTTGGACTCCACAACAGAACAGCAACGTATCGTTTTGTCACTTTGGTTGATGTAAGTTTGACTTCATATTTGGATATTTTTTACTTTTATAACCTCAATTTACATGGAAGTTTGTTACTTTTGTGA

Protein sequence

MIEFALPFVYLLVAGLQIWHLKTFFVKKKIAIICTYIVYWYPPYYKQKPNFFDPWSLVSSSSFGISCNGIHFGILGIENFNHKKNFTLALEGVPIFGLHNRTATYRFVTLVDVSLTSYLDIFYFYNLNLHGSLLLL*
Homology
[Close]
BLAST of MELO3C024738 vs. TrEMBL
Match: A0A0D2RWX8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G105600 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.5e-06
Identity = 32/43 (74.42%), Postives = 35/43 (81.40%), Query Frame = 1 

Query: 84  KNF-TLALEGVPIFGLHNRTATYRFVTLVDV-SLTSYLDIFYF 125
           KNF TLALEGVP FGLHNRTA YRFVTLVDV S+ SY+ +  F
Sbjct: 375 KNFHTLALEGVPKFGLHNRTAAYRFVTLVDVCSIASYIGLTVF 417

[Close]
BLAST of MELO3C024738 vs. TrEMBL
Match: A0A061GWR4_THECC (AFG1-like ATPase family protein isoform 2 OS=Theobroma cacao GN=TCM_038478 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 7.2e-06
Identity = 36/69 (52.17%), Postives = 40/69 (57.97%), Query Frame = 1 

Query: 62  SFGISCNGIHFGILGIENFNHK----------------KNF-TLALEGVPIFGLHNRTAT 114
           SF  SC+ + FG  G   F+ +                KNF TLALEGVP FGLHNRTA 
Sbjct: 363 SFFFSCDQVPFGANGCAYFSFEELCDKPLGAADYFGLCKNFHTLALEGVPKFGLHNRTAA 422

[Close]
BLAST of MELO3C024738 vs. TrEMBL
Match: M5XEI6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004561mg PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 9.4e-06
Identity = 28/31 (90.32%), Postives = 28/31 (90.32%), Query Frame = 1 

Query: 83  KKNFTLALEGVPIFGLHNRTATYRFVTLVDV 114
           KK  TLALEGVPIFGLHNRTA YRFVTLVDV
Sbjct: 375 KKYHTLALEGVPIFGLHNRTAAYRFVTLVDV 405

[Close]
BLAST of MELO3C024738 vs. TAIR10
Match: AT4G28070.2 (AT4G28070.2 AFG1-like ATPase family protein)

HSP 1 Score: 56.2 bits (134), Expect = 1.8e-08
Identity = 27/31 (87.10%), Postives = 25/31 (80.65%), Query Frame = 1 

Query: 83  KKNFTLALEGVPIFGLHNRTATYRFVTLVDV 114
           KK  TLALEGVP FGLHNRTA YRFVTLVDV
Sbjct: 355 KKFHTLALEGVPFFGLHNRTAAYRFVTLVDV 385

[Close]
BLAST of MELO3C024738 vs. TAIR10
Match: AT4G30490.1 (AT4G30490.1 AFG1-like ATPase family protein)

HSP 1 Score: 52.8 bits (125), Expect = 2.0e-07
Identity = 24/31 (77.42%), Postives = 25/31 (80.65%), Query Frame = 1 

Query: 83  KKNFTLALEGVPIFGLHNRTATYRFVTLVDV 114
           KK  TLAL+ +P+FGLHNRTA YRFVTLVDV
Sbjct: 384 KKFHTLALDEIPVFGLHNRTAAYRFVTLVDV 414

[Close]
BLAST of MELO3C024738 vs. NCBI nr
Match: gi|659125638|ref|XP_008462788.1| (PREDICTED: uncharacterized protein LOC103501079 [Cucumis melo])

HSP 1 Score: 68.2 bits (165), Expect = 1.3e-08
Identity = 40/78 (51.28%), Postives = 48/78 (61.54%), Query Frame = 1 

Query: 38  VYWYPPYYKQKPNFFDPWSLVSSSSFGISCNGIHFGILGIENFNHKKNFTLALEGVPIFG 97
           +Y  P  Y +  NF +     +SS+FG             + F +KKNFTLALEGVPIFG
Sbjct: 17  LYCNPTTYPKVRNFPNK----TSSTFG-------------QTFVYKKNFTLALEGVPIFG 76

Query: 98  LHNRTATYRFVTLVDVSL 116
           LHNRTATYRFVTLVD  +
Sbjct: 77  LHNRTATYRFVTLVDFKM 77

[Close]
BLAST of MELO3C024738 vs. NCBI nr
Match: gi|763756249|gb|KJB23580.1| (hypothetical protein B456_004G105600 [Gossypium raimondii])

HSP 1 Score: 58.9 bits (141), Expect = 7.9e-06
Identity = 32/43 (74.42%), Postives = 35/43 (81.40%), Query Frame = 1 

Query: 84  KNF-TLALEGVPIFGLHNRTATYRFVTLVDV-SLTSYLDIFYF 125
           KNF TLALEGVP FGLHNRTA YRFVTLVDV S+ SY+ +  F
Sbjct: 375 KNFHTLALEGVPKFGLHNRTAAYRFVTLVDVCSIASYIGLTVF 417

The following BLAST results are available for this feature:
BLAST of MELO3C024738 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0D2RWX8_GOSRA5.5e-0674.42Uncharacterized protein OS=Gossypium raimondii GN=B456_004G105600 PE=4 SV=1[more]
A0A061GWR4_THECC7.2e-0652.17AFG1-like ATPase family protein isoform 2 OS=Theobroma cacao GN=TCM_038478 PE=4 ... [more]
M5XEI6_PRUPE9.4e-0690.32Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004561mg PE=4 SV=1[more]
BLAST of MELO3C024738 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G28070.21.8e-0887.10 AFG1-like ATPase family protein[more]
AT4G30490.12.0e-0777.42 AFG1-like ATPase family protein[more]
BLAST of MELO3C024738 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659125638|ref|XP_008462788.1|1.3e-0851.28PREDICTED: uncharacterized protein LOC103501079 [Cucumis melo][more]
gi|763756249|gb|KJB23580.1|7.9e-0674.42hypothetical protein B456_004G105600 [Gossypium raimondii][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005524 ATP binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU54921melon EST collection version 4.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C024738T1MELO3C024738T1mRNA
MELO3C024738T2MELO3C024738T2mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU54921MU54921transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C024738Watermelon (97103) v2mewmbB092
MELO3C024738Wax gourdmewgoB126
MELO3C024738Cucumber (Gy14) v1cgymeB440
MELO3C024738Cucurbita maxima (Rimu)cmameB493
MELO3C024738Cucurbita maxima (Rimu)cmameB534
MELO3C024738Cucurbita moschata (Rifu)cmomeB483
MELO3C024738Cucurbita moschata (Rifu)cmomeB524
MELO3C024738Wild cucumber (PI 183967)cpimeB096
MELO3C024738Cucumber (Chinese Long) v2cumeB087
MELO3C024738Watermelon (Charleston Gray)mewcgB090
MELO3C024738Watermelon (97103) v1mewmB125
MELO3C024738Cucurbita pepo (Zucchini)cpemeB260
MELO3C024738Cucurbita pepo (Zucchini)cpemeB672
MELO3C024738Bottle gourd (USVL1VR-Ls)lsimeB053
MELO3C024738Cucumber (Gy14) v2cgybmeB083
MELO3C024738Silver-seed gourdcarmeB0935
MELO3C024738Silver-seed gourdcarmeB1022
MELO3C024738Cucumber (Chinese Long) v3cucmeB103