MELO3C024727.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C024727.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	p-loop nucleoside triphosphate hydrolase superfamily protein, putative
Location	chr11 : 7375088 .. 7375285 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAATTGCACCAAGGTTGGACAGATTAATAACAAATTGGAGAAGATGGAGAAACACCAAGAACACAGATCAAGTGACTGGTGAAGAAGATACACCAAGCTCTTCAAATGCTACTTTGTTCACCCCCGATTCTCAACCTAAGATGGAGATGGACTCAATACCATCATCCTCTAGGACAGCAAAGAATAATTTTTAA

mRNA sequence

ATGGGAATTGCACCAAGGTTGGACAGATTAATAACAAATTGGAGAAGATGGAGAAACACCAAGAACACAGATCAAGTGACTGGTGAAGAAGATACACCAAGCTCTTCAAATGCTACTTTGTTCACCCCCGATTCTCAACCTAAGATGGAGATGGACTCAATACCATCATCCTCTAGGACAGCAAAGAATAATTTTTAA

Coding sequence (CDS)

ATGGGAATTGCACCAAGGTTGGACAGATTAATAACAAATTGGAGAAGATGGAGAAACACCAAGAACACAGATCAAGTGACTGGTGAAGAAGATACACCAAGCTCTTCAAATGCTACTTTGTTCACCCCCGATTCTCAACCTAAGATGGAGATGGACTCAATACCATCATCCTCTAGGACAGCAAAGAATAATTTTTAA

Protein sequence

MGIAPRLDRLITNWRRWRNTKNTDQVTGEEDTPSSSNATLFTPDSQPKMEMDSIPSSSRTAKNNF

Homology

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BLAST of MELO3C024727.2 vs. NCBI nr
Match: KGN64404.1 (hypothetical protein Csa_1G050430 [Cucumis sativus])

HSP 1 Score: 88.2 bits (217), Expect = 1.1e-14
Identity = 45/46 (97.83%), Postives = 45/46 (97.83%), Query Frame = 0


Query: 20  TKNTDQVTGEEDTPSSSNATLFTPDSQPKMEMDSIPSSSRTAKNNF 66
           TKNTDQVTGEEDTPSSSNATLFTPDSQPKMEMDSIPSSS TAKNNF
Sbjct: 568 TKNTDQVTGEEDTPSSSNATLFTPDSQPKMEMDSIPSSSGTAKNNF 613

[Close]

BLAST of MELO3C024727.2 vs. NCBI nr
Match: XP_011652073.1 (PREDICTED: uncharacterized protein LOC101214766 isoform X1 [Cucumis sativus])

HSP 1 Score: 88.2 bits (217), Expect = 1.1e-14
Identity = 45/46 (97.83%), Postives = 45/46 (97.83%), Query Frame = 0


Query: 20  TKNTDQVTGEEDTPSSSNATLFTPDSQPKMEMDSIPSSSRTAKNNF 66
           TKNTDQVTGEEDTPSSSNATLFTPDSQPKMEMDSIPSSS TAKNNF
Sbjct: 546 TKNTDQVTGEEDTPSSSNATLFTPDSQPKMEMDSIPSSSGTAKNNF 591

[Close]

BLAST of MELO3C024727.2 vs. NCBI nr
Match: XP_011652077.1 (PREDICTED: uncharacterized protein LOC101214766 isoform X2 [Cucumis sativus])

HSP 1 Score: 88.2 bits (217), Expect = 1.1e-14
Identity = 45/46 (97.83%), Postives = 45/46 (97.83%), Query Frame = 0


Query: 20  TKNTDQVTGEEDTPSSSNATLFTPDSQPKMEMDSIPSSSRTAKNNF 66
           TKNTDQVTGEEDTPSSSNATLFTPDSQPKMEMDSIPSSS TAKNNF
Sbjct: 546 TKNTDQVTGEEDTPSSSNATLFTPDSQPKMEMDSIPSSSGTAKNNF 591

[Close]

BLAST of MELO3C024727.2 vs. NCBI nr
Match: XP_011652083.1 (PREDICTED: uncharacterized protein LOC101214766 isoform X3 [Cucumis sativus])

HSP 1 Score: 88.2 bits (217), Expect = 1.1e-14
Identity = 45/46 (97.83%), Postives = 45/46 (97.83%), Query Frame = 0


Query: 20  TKNTDQVTGEEDTPSSSNATLFTPDSQPKMEMDSIPSSSRTAKNNF 66
           TKNTDQVTGEEDTPSSSNATLFTPDSQPKMEMDSIPSSS TAKNNF
Sbjct: 519 TKNTDQVTGEEDTPSSSNATLFTPDSQPKMEMDSIPSSSGTAKNNF 564

[Close]

BLAST of MELO3C024727.2 vs. NCBI nr
Match: XP_011652085.1 (PREDICTED: uncharacterized protein LOC101214766 isoform X4 [Cucumis sativus])

HSP 1 Score: 88.2 bits (217), Expect = 1.1e-14
Identity = 45/46 (97.83%), Postives = 45/46 (97.83%), Query Frame = 0


Query: 20  TKNTDQVTGEEDTPSSSNATLFTPDSQPKMEMDSIPSSSRTAKNNF 66
           TKNTDQVTGEEDTPSSSNATLFTPDSQPKMEMDSIPSSS TAKNNF
Sbjct: 512 TKNTDQVTGEEDTPSSSNATLFTPDSQPKMEMDSIPSSSGTAKNNF 557

[Close]

BLAST of MELO3C024727.2 vs. TrEMBL
Match: tr|A0A1S4DTS2|A0A1S4DTS2_CUCME (LOW QUALITY PROTEIN: uncharacterized protein LOC103484405 OS=Cucumis melo OX=3656 GN=LOC103484405 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 7.4e-15
Identity = 45/46 (97.83%), Postives = 45/46 (97.83%), Query Frame = 0


Query: 20  TKNTDQVTGEEDTPSSSNATLFTPDSQPKMEMDSIPSSSRTAKNNF 66
           TKNTDQVTGEEDTPSSSNATLFTPDSQPKMEMDSIPSSS TAKNNF
Sbjct: 546 TKNTDQVTGEEDTPSSSNATLFTPDSQPKMEMDSIPSSSGTAKNNF 591

[Close]

BLAST of MELO3C024727.2 vs. TrEMBL
Match: tr|A0A0A0LTU2|A0A0A0LTU2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050430 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 7.4e-15
Identity = 45/46 (97.83%), Postives = 45/46 (97.83%), Query Frame = 0


Query: 20  TKNTDQVTGEEDTPSSSNATLFTPDSQPKMEMDSIPSSSRTAKNNF 66
           TKNTDQVTGEEDTPSSSNATLFTPDSQPKMEMDSIPSSS TAKNNF
Sbjct: 568 TKNTDQVTGEEDTPSSSNATLFTPDSQPKMEMDSIPSSSGTAKNNF 613

The following BLAST results are available for this feature:

BLAST of MELO3C024727.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64404.1	1.1e-14	97.83	hypothetical protein Csa_1G050430 [Cucumis sativus]	[more]
XP_011652073.1	1.1e-14	97.83	PREDICTED: uncharacterized protein LOC101214766 isoform X1 [Cucumis sativus]	[more]
XP_011652077.1	1.1e-14	97.83	PREDICTED: uncharacterized protein LOC101214766 isoform X2 [Cucumis sativus]	[more]
XP_011652083.1	1.1e-14	97.83	PREDICTED: uncharacterized protein LOC101214766 isoform X3 [Cucumis sativus]	[more]
XP_011652085.1	1.1e-14	97.83	PREDICTED: uncharacterized protein LOC101214766 isoform X4 [Cucumis sativus]	[more]

BLAST of MELO3C024727.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C024727.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C024727.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4DTS2\|A0A1S4DTS2_CUCME	7.4e-15	97.83	LOW QUALITY PROTEIN: uncharacterized protein LOC103484405 OS=Cucumis melo OX=365...	[more]
tr\|A0A0A0LTU2\|A0A0A0LTU2_CUCSA	7.4e-15	97.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G050430 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016787	hydrolase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C024727.2.1	MELO3C024727.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..65

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C024727.2	Cucumber (Gy14) v2	cgybmedB080
MELO3C024727.2	Cucumber (Gy14) v1	cgymedB435
MELO3C024727.2	Cucurbita maxima (Rimu)	cmamedB573
MELO3C024727.2	Cucurbita maxima (Rimu)	cmamedB616
MELO3C024727.2	Cucurbita moschata (Rifu)	cmomedB561
MELO3C024727.2	Cucurbita moschata (Rifu)	cmomedB605
MELO3C024727.2	Cucurbita pepo (Zucchini)	cpemedB306
MELO3C024727.2	Cucurbita pepo (Zucchini)	cpemedB806
MELO3C024727.2	Wild cucumber (PI 183967)	cpimedB088
MELO3C024727.2	Cucumber (Chinese Long) v2	cumedB088
MELO3C024727.2	Bottle gourd (USVL1VR-Ls)	lsimedB054
MELO3C024727.2	Watermelon (Charleston Gray)	medwcgB088
MELO3C024727.2	Watermelon (97103) v1	medwmB120
MELO3C024727.2	Silver-seed gourd	carmedB1034
MELO3C024727.2	Cucumber (Chinese Long) v3	cucmedB096
MELO3C024727.2	Watermelon (97103) v2	medwmbB087
MELO3C024727.2	Wax gourd	medwgoB128
MELO3C024727.2	Wax gourd	medwgoB139