MELO3C024726 (gene) Melon (DHL92) v3.5.1

NameMELO3C024726
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionF-box and associated interaction domains-containing protein
Locationchr11 : 7226766 .. 7227119 (+)
   



The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGATCTCCTCAATCTCATGAGCACAGATTGAAGTTGTTTGATTCTACTCCTTCAGAAGAAGCTTTTCATATGCAATCCTCTTATACAGGGTCATCTGGTGGAAGAAGAGGTGGACATAGTCGTAGAAGCAATGGAAGATCCAACGTCATAACAAATAAGAGTCAGAGAGTAGAGACAATCAATCTTCTTCAACTAAAGGAAGAGGAAGAAGTTCAAATAGAGGAAGAGGCAAAAGTGGTGGTCGTGGAGATTTTTCTCACATACAATGTTTCAATTGTAGACGTTATGGACATTTTCAAGCAGATTGTTGAACTAAAAAGGCTAATTCTAATAAAGCAGAAACCACTCTAA

mRNA sequence

ATGGGATCTCCTCAATCTCATGAGCACAGATTGAAGTTGTTTGATTCTACTCCTTCAGAAGAAGCTTTTCATATGCAATCCTCTTATACAGGGTCATCTGGTGGAAGAAGAGGTGGACATAGTCGTAGAAGCAATGGAAGATCCAACGTCATAACAAATAAGAGTCAGAGAGTAGAGACAATCAATCTTCTTCAACTAAAGGAAGAGGAAGAAGTTCAAATAGAGGAAGAGGCAAAAGTGGTGGTCGTGGAGATTTTTCTCACATACAATGTTTCAATTGTAGACGTTATGGACATTTTCAAGCAGATTGTTGAACTAAAAAGGCTAATTCTAATAAAGCAGAAACCACTCTAA

Coding sequence (CDS)

ATGGGATCTCCTCAATCTCATGAGCACAGATTGAAGTTGTTTGATTCTACTCCTTCAGAAGAAGCTTTTCATATGCAATCCTCTTATACAGGGTCATCTGGTGGAAGAAGAGGTGGACATAGTCGTAGAAGCAATGGAAGATCCAACGTCATAACAAATAAGAGTCAGAGAGTAGAGACAATCAATCTTCTTCAACTAAAGGAAGAGGAAGAAGTTCAAATAGAGGAAGAGGCAAAAGTGGTGGTCGTGGAGATTTTTCTCACATACAATGTTTCAATTGTAGACGTTATGGACATTTTCAAGCAGATTGTTGAACTAAAAAGGCTAATTCTAATAAAGCAGAAACCACTCTAA

Protein sequence

MGSPQSHEHRLKLFDSTPSEEAFHMQSSYTGSSGGRRGGHSRRSNGRSNVITNKSQRVETINLLQLKEEEEVQIEEEAKVVVVEIFLTYNVSIVDVMDIFKQIVELKRLILIKQKPL*
BLAST of MELO3C024726 vs. TrEMBL
Match: A6YTD9_CUCME (Integrase OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.3e-07
Identity = 32/48 (66.67%), Postives = 35/48 (72.92%), Query Frame = 1

Query: 1   MGSPQSHEHRLKLFDSTPSEEAFHMQSSYTGSSGGRRGGHSRRSNGRS 49
           MGS QSHE RLK FD  P EEAF MQ+S+ G S GRRGGH RR  GR+
Sbjct: 193 MGSLQSHELRLKQFDVNP-EEAFQMQTSFRGGSRGRRGGHGRRGGGRN 239

BLAST of MELO3C024726 vs. NCBI nr
Match: gi|659099180|ref|XP_008450471.1| (PREDICTED: uncharacterized protein LOC103492064 [Cucumis melo])

HSP 1 Score: 63.2 bits (152), Expect = 3.6e-07
Identity = 35/67 (52.24%), Postives = 43/67 (64.18%), Query Frame = 1

Query: 1   MGSPQSHEHRLKLFDSTPSEEAFHMQSSYTGSSGGRRGGHSRRSNG-----RSNVITNKS 60
           MGS QSHE RLK FD  P EEAF MQ+S+ G S GRRGGH RR +G     RS   +  S
Sbjct: 193 MGSLQSHELRLKQFDVDP-EEAFQMQTSFRGGSRGRRGGHGRRGDGRNYDNRSGANSENS 252

Query: 61  QRVETIN 63
           Q + +++
Sbjct: 253 QEISSLS 258

BLAST of MELO3C024726 vs. NCBI nr
Match: gi|150036244|gb|ABR67407.1| (integrase [Cucumis melo subsp. melo])

HSP 1 Score: 62.8 bits (151), Expect = 4.7e-07
Identity = 32/48 (66.67%), Postives = 35/48 (72.92%), Query Frame = 1

Query: 1   MGSPQSHEHRLKLFDSTPSEEAFHMQSSYTGSSGGRRGGHSRRSNGRS 49
           MGS QSHE RLK FD  P EEAF MQ+S+ G S GRRGGH RR  GR+
Sbjct: 193 MGSLQSHELRLKQFDVNP-EEAFQMQTSFRGGSRGRRGGHGRRGGGRN 239

BLAST of MELO3C024726 vs. NCBI nr
Match: gi|659116536|ref|XP_008458119.1| (PREDICTED: uncharacterized protein LOC103497649 [Cucumis melo])

HSP 1 Score: 59.7 bits (143), Expect = 4.0e-06
Identity = 32/48 (66.67%), Postives = 34/48 (70.83%), Query Frame = 1

Query: 1  MGSPQSHEHRLKLFDSTPSEEAFHMQSSYTGSSGGRRGGHSRRSNGRS 49
          MGS QSHE RLK FD  P EEAF MQ+S  GSS GRRGGH  R  GR+
Sbjct: 1  MGSLQSHELRLKQFDVNP-EEAFQMQTSLRGSSHGRRGGHGIRGGGRN 47

BLAST of MELO3C024726 vs. NCBI nr
Match: gi|659125396|ref|XP_008462665.1| (PREDICTED: probable rRNA-processing protein EBP2 homolog [Cucumis melo])

HSP 1 Score: 59.7 bits (143), Expect = 4.0e-06
Identity = 31/48 (64.58%), Postives = 34/48 (70.83%), Query Frame = 1

Query: 1   MGSPQSHEHRLKLFDSTPSEEAFHMQSSYTGSSGGRRGGHSRRSNGRS 49
           MGS QSHE RLK FD  P EEAF MQ+S+ G S  RRGGH RR  GR+
Sbjct: 154 MGSLQSHELRLKQFDVNP-EEAFQMQTSFRGGSRERRGGHGRRGGGRN 200

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A6YTD9_CUCME3.3e-0766.67Integrase OS=Cucumis melo subsp. melo PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|659099180|ref|XP_008450471.1|3.6e-0752.24PREDICTED: uncharacterized protein LOC103492064 [Cucumis melo][more]
gi|150036244|gb|ABR67407.1|4.7e-0766.67integrase [Cucumis melo subsp. melo][more]
gi|659116536|ref|XP_008458119.1|4.0e-0666.67PREDICTED: uncharacterized protein LOC103497649 [Cucumis melo][more]
gi|659125396|ref|XP_008462665.1|4.0e-0664.58PREDICTED: probable rRNA-processing protein EBP2 homolog [Cucumis melo][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU54921melon EST collection version 4.0transcribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C024726T1MELO3C024726T1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU54921MU54921transcribed_cluster


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None