MELO3C024713 (gene) Melon (DHL92) v3.5.1

NameMELO3C024713
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionLRR and NB-ARC domains-containing disease resistance protein
Locationchr2 : 20785121 .. 20785563 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGATCACATATCAATTGCTCGTCTTATGCGTCGTCATCGAGGGGCTTTTGTAGCCTCTCTTCACTGCCATCTACTTGATACCTCTACCCTTACAGAGAAAGCTTATGCACTCACTGCGGGATTCTCTACTCCAACTGATGATATATTTGTTTCGGCTAGTGCATCTTCTTCTACAAAGAAGGTCTCTGCCTCTTTTGAGGGAGTTTCTGCTCCGGCTAGTGCATCTACTCGTACGAAGGGAGCTTCTGCACCAACAGAAGAGGTTTATGCTCTGGCTGGTTCGTTTATTCCTTCACTGGTCAAGCCTCTTCATTGTCCTCCTTTCAAGGGTCAAAAAGTAATTACTACTAATGTCGGGAATGGAAAGTTGCCTCCTAACGTCCCTGATATTTCTATTGATGGGGTCTCGTTCCATTCTGAAGATAGTGTACATAAATAA

mRNA sequence

ATGAGGATCACATATCAATTGCTCGTCTTATGCGTCGTCATCGAGGGGCTTTTGTAGCCTCTCTTCACTGCCATCTACTTGATACCTCTACCCTTACAGAGAAAGCTTATGCACTCACTGCGGGATTCTCTACTCCAACTGATGATATATTTGTTTCGGCTAGTGCATCTTCTTCTACAAAGAAGGTCTCTGCCTCTTTTGAGGGAGTTTCTGCTCCGGCTAGTGCATCTACTCGTACGAAGGGAGCTTCTGCACCAACAGAAGAGGTTTATGCTCTGGCTGGTTCGTTTATTCCTTCACTGGTCAAGCCTCTTCATTGTCCTCCTTTCAAGGGTCAAAAAGTAATTACTACTAATGTCGGGAATGGAAAGTTGCCTCCTAACGTCCCTGATATTTCTATTGATGGGGTCTCGTTCCATTCTGAAGATAGTGTACATAAATAA

Coding sequence (CDS)

ATGAGGATCACATATCAATTGCTCGTCTTATGCGTCGTCATCGAGGGGCTTTTGTAGCCTCTCTTCACTGCCATCTACTTGATACCTCTACCCTTACAGAGAAAGCTTATGCACTCACTGCGGGATTCTCTACTCCAACTGATGATATATTTGTTTCGGCTAGTGCATCTTCTTCTACAAAGAAGGTCTCTGCCTCTTTTGAGGGAGTTTCTGCTCCGGCTAGTGCATCTACTCGTACGAAGGGAGCTTCTGCACCAACAGAAGAGGTTTATGCTCTGGCTGGTTCGTTTATTCCTTCACTGGTCAAGCCTCTTCATTGTCCTCCTTTCAAGGGTCAAAAAGTAATTACTACTAATGTCGGGAATGGAAAGTTGCCTCCTAACGTCCCTGATATTTCTATTGATGGGGTCTCGTTCCATTCTGAAGATAGTGTACATAAATAA

Protein sequence

EDHISIARLMRRHRGAFVASLHCHLLDTSTLTEKAYALTAGFSTPTDDIFVSASASSSTKKVSASFEGVSAPASASTRTKGASAPTEEVYALAGSFIPSLVKPLHCPPFKGQKVITTNVGNGKLPPNVPDISIDGVSFHSEDSVHK*
BLAST of MELO3C024713 vs. TrEMBL
Match: E5GBZ9_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.6e-06
Identity = 43/117 (36.75%), Postives = 60/117 (51.28%), Query Frame = 1

Query: 26  LDTSTLTEKA-YALTAGFSTPTDDIFVSASASSSTKKVSASFEGVSAPASASTRTKGASA 85
           L+  TL   +  AL+   +T ++D+   A +   +  V  S      P+S S   + A +
Sbjct: 24  LNVDTLAPSSEVALSVDDATSSNDVDSDAPSILDSMLVGHSPSVDDFPSSLSIVAEDAPS 83

Query: 86  PTEEVYALAGSFIPSLVKPLHCPPFKGQKVITTNVGNGKLPPNVPDISIDGVSFHSE 142
            T  V+    S + +  K    PPFK QKVITT V + KLP N P I IDG+SFHSE
Sbjct: 84  STAGVFPSMNSSVLAPPKLHWRPPFKEQKVITTKVYHRKLPQNAPSIPIDGLSFHSE 140

BLAST of MELO3C024713 vs. NCBI nr
Match: gi|659082052|ref|XP_008441642.1| (PREDICTED: uncharacterized protein LOC103485722 [Cucumis melo])

HSP 1 Score: 63.5 bits (153), Expect = 3.4e-07
Identity = 45/154 (29.22%), Postives = 72/154 (46.75%), Query Frame = 1

Query: 1   EDHISIARLMRRHRGAFVASLHCHLL--------DTSTLTEKAYALTAGFSTPTDDIFVS 60
           +D++ ++ L+ R   A  +S H            D S  T++ Y         T++  V 
Sbjct: 267 KDNVVLSTLLHRKSSAAPSSPHAFPQASLPTNEDDASDETDEDYV------PGTEETTVL 326

Query: 61  ASASSSTKKVSASFEGVSAPASASTRTKGASAPTEEVYALAGSFIPSLVKPLHCPPFKGQ 120
             +S+ST+  SAS +  +    ++  +   S P      +  S+       L  PP +GQ
Sbjct: 327 EDSSTSTEDPSASHDARTLEPRSTEGSSEFSIPMSPPGNVDSSY------SLRRPPVRGQ 386

Query: 121 KVITTNVGNGKLPPNVPDISIDGVSFHSEDSVHK 147
           +V +T  G  K+PPNVP + IDGVSF SE+  HK
Sbjct: 387 RVFSTKAGRRKIPPNVPSVPIDGVSFRSEEGAHK 408

BLAST of MELO3C024713 vs. NCBI nr
Match: gi|659082066|ref|XP_008441650.1| (PREDICTED: uncharacterized protein LOC103485731 [Cucumis melo])

HSP 1 Score: 62.8 bits (151), Expect = 5.9e-07
Identity = 41/102 (40.20%), Postives = 54/102 (52.94%), Query Frame = 1

Query: 54  SASSSTKKVSASFE-------GVSAPASAST--RTKGASAPTEEVYALAGSFIPSLVKPL 113
           + S+ST+  SAS E           P  +S    T+G S  +  V  LA     S  +  
Sbjct: 139 ATSTSTENQSASPEKDPYDHRSTEEPGESSIPRSTEGPSESSTPVSTLAHVASSSGFRR- 198

Query: 114 HCPPFKGQKVITTNVGNGKLPPNVPDISIDGVSFHSEDSVHK 147
             PP KGQ+V++T  G  K+PPNVP + IDGVSFHSE+  HK
Sbjct: 199 --PPTKGQRVVSTKTGRQKVPPNVPSVPIDGVSFHSEEEAHK 237

BLAST of MELO3C024713 vs. NCBI nr
Match: gi|307136155|gb|ADN33998.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 60.8 bits (146), Expect = 2.2e-06
Identity = 43/117 (36.75%), Postives = 60/117 (51.28%), Query Frame = 1

Query: 26  LDTSTLTEKA-YALTAGFSTPTDDIFVSASASSSTKKVSASFEGVSAPASASTRTKGASA 85
           L+  TL   +  AL+   +T ++D+   A +   +  V  S      P+S S   + A +
Sbjct: 24  LNVDTLAPSSEVALSVDDATSSNDVDSDAPSILDSMLVGHSPSVDDFPSSLSIVAEDAPS 83

Query: 86  PTEEVYALAGSFIPSLVKPLHCPPFKGQKVITTNVGNGKLPPNVPDISIDGVSFHSE 142
            T  V+    S + +  K    PPFK QKVITT V + KLP N P I IDG+SFHSE
Sbjct: 84  STAGVFPSMNSSVLAPPKLHWRPPFKEQKVITTKVYHRKLPQNAPSIPIDGLSFHSE 140

BLAST of MELO3C024713 vs. NCBI nr
Match: gi|659128057|ref|XP_008464024.1| (PREDICTED: uncharacterized protein LOC103502008 [Cucumis melo])

HSP 1 Score: 60.5 bits (145), Expect = 2.9e-06
Identity = 35/115 (30.43%), Postives = 59/115 (51.30%), Query Frame = 1

Query: 43  STPTDD-----------IFVSASASSSTKKVSASFEGVSAPASASTRTKGASAPTEEVYA 102
           S PTDD           + V+    +  + ++++ + VS+P + +   +   AP E   +
Sbjct: 84  SLPTDDDEASDDIDEDYVPVTKETHALEETMTSTEDLVSSPDNRTPEPQSTKAPGESSIS 143

Query: 103 LAGSFIPSLVKPLHCPPFKGQKVITTNVGNGKLPPNVPDISIDGVSFHSEDSVHK 147
           ++           H    +GQ+V++T  GN K+P N+P +SIDGVSFHSE+  HK
Sbjct: 144 MSPLVHVGSSSRPHRQLVRGQRVVSTKTGNRKIPSNIPFMSIDGVSFHSEEGAHK 198

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
E5GBZ9_CUCME1.6e-0636.75Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|659082052|ref|XP_008441642.1|3.4e-0729.22PREDICTED: uncharacterized protein LOC103485722 [Cucumis melo][more]
gi|659082066|ref|XP_008441650.1|5.9e-0740.20PREDICTED: uncharacterized protein LOC103485731 [Cucumis melo][more]
gi|307136155|gb|ADN33998.1|2.2e-0636.75hypothetical protein [Cucumis melo subsp. melo][more]
gi|659128057|ref|XP_008464024.1|2.9e-0630.43PREDICTED: uncharacterized protein LOC103502008 [Cucumis melo][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C024713T1MELO3C024713T1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None