MELO3C024694 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C024694
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Putative E3 ubiquitin-protein ligase LIN-1
Location	chr2 : 20397790 .. 20398800 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGACACTGGTTTCACCACCGCGTCGAATATTCTCCACCATATATCAACCTTCATCTCTGAAATACTTGCTCAATCCGACCTCCGAAAGCGCCTTCTCTCCACCGTGTACGATAACTTTTCACTTTCCGACGAGATTGCCCAAAAACCACTAGGGCTTGCAGCTGAAGCTCTCGAAAACGCCATCTCCGCCGACAACTCTTCGATCAAATCCTCCTCTCTACGTTGTGCAGAAGAGCTACTCCTCTCCCTTCCTGAAAATCCTATTTCTTCTTTTCTATTATCCCTAATCTACGGCCTCAATCACCAAAACCTCAACTCCGCTCTTAGGCTCCTCGATTTGTTCCTCTTATACCCTTCATTGGCTCGGTCCGAAATCGCTCCGACTCTGTTCGAGGAGCTCTTTCTCGGCCATTTTCTTCCGATTTTTCATTGGTTCAACGAACAGAGATCAAAAATCGTGAAATCCTTGGCCTCGAATTTGAATCACAATGGTGGTGGGGAATATTCAAGGTGTGAGGAATGGGAAGTTGTTCCATGCACGAAATCGCTGTCGAAGTTGAGCATTGATCAAACTTTGAAGCTGAAGGAACTGGAAAGCAATTACGAGAGAGTTTTGGACAGGAATTGCACGGATTTTGCGGAACATTTCAAAAAGATTTTGGAAAGGAATGAGGAAAGTGAATGGATTCCGAGTCCGAAGGTAAAATTATTGAATAAGAAAGAGAAATGGAAGGAAATGGAGCAGATTGTAGAGGAGAAGTTAAGAACGGAGCACCTCAGTTTACCCAATGGACGGTATAATGTAATATTATTAATTGCTCTTCTTTATATATATTGTTTTTCTAACTTTTTAATTATCAATAATACCCTTAGACATAATAATAATAAAAAAAAAAATAGAGAGAGAAAAGCAACTATTCTGGTTTCCATTAGACCCCTTCTACGGCACCCATCAATTGAGTGGTTTTTTATTAGAGGAAGAATTAGAAGACAAGAGAAGCAATAA

mRNA sequence

ATGGTGGACACTGGTTTCACCACCGCGTCGAATATTCTCCACCATATATCAACCTTCATCTCTGAAATACTTGCTCAATCCGACCTCCGAAAGCGCCTTCTCTCCACCGTGTACGATAACTTTTCACTTTCCGACGAGATTGCCCAAAAACCACTAGGGCTTGCAGCTGAAGCTCTCGAAAACGCCATCTCCGCCGACAACTCTTCGATCAAATCCTCCTCTCTACGTTGTGCAGAAGAGCTACTCCTCTCCCTTCCTGAAAATCCTATTTCTTCTTTTCTATTATCCCTAATCTACGGCCTCAATCACCAAAACCTCAACTCCGCTCTTAGGCTCCTCGATTTGTTCCTCTTATACCCTTCATTGGCTCGGTCCGAAATCGCTCCGACTCTGTTCGAGGAGCTCTTTCTCGGCCATTTTCTTCCGATTTTTCATTGGTTCAACGAACAGAGATCAAAAATCGTGAAATCCTTGGCCTCGAATTTGAATCACAATGGTGGTGGGGAATATTCAAGGTGTGAGGAATGGGAAGTTGTTCCATGCACGAAATCGCTGTCGAAGTTGAGCATTGATCAAACTTTGAAGCTGAAGGAACTGGAAAGCAATTACGAGAGAGTTTTGGACAGGAATTGCACGGATTTTGCGGAACATTTCAAAAAGATTTTGGAAAGGAATGAGGAAAGTGAATGGATTCCGAGTCCGAAGGTAAAATTATTGAATAAGAAAGAGAAATGGAAGGAAATGGAGCAGATTGTAGAGGAGAAGTTAAGAACGGAGCACCTCAGTTTACCCAATGGACGAGGAAGAATTAGAAGACAAGAGAAGCAATAA

Coding sequence (CDS)

ATGGTGGACACTGGTTTCACCACCGCGTCGAATATTCTCCACCATATATCAACCTTCATCTCTGAAATACTTGCTCAATCCGACCTCCGAAAGCGCCTTCTCTCCACCGTGTACGATAACTTTTCACTTTCCGACGAGATTGCCCAAAAACCACTAGGGCTTGCAGCTGAAGCTCTCGAAAACGCCATCTCCGCCGACAACTCTTCGATCAAATCCTCCTCTCTACGTTGTGCAGAAGAGCTACTCCTCTCCCTTCCTGAAAATCCTATTTCTTCTTTTCTATTATCCCTAATCTACGGCCTCAATCACCAAAACCTCAACTCCGCTCTTAGGCTCCTCGATTTGTTCCTCTTATACCCTTCATTGGCTCGGTCCGAAATCGCTCCGACTCTGTTCGAGGAGCTCTTTCTCGGCCATTTTCTTCCGATTTTTCATTGGTTCAACGAACAGAGATCAAAAATCGTGAAATCCTTGGCCTCGAATTTGAATCACAATGGTGGTGGGGAATATTCAAGGTGTGAGGAATGGGAAGTTGTTCCATGCACGAAATCGCTGTCGAAGTTGAGCATTGATCAAACTTTGAAGCTGAAGGAACTGGAAAGCAATTACGAGAGAGTTTTGGACAGGAATTGCACGGATTTTGCGGAACATTTCAAAAAGATTTTGGAAAGGAATGAGGAAAGTGAATGGATTCCGAGTCCGAAGGTAAAATTATTGAATAAGAAAGAGAAATGGAAGGAAATGGAGCAGATTGTAGAGGAGAAGTTAAGAACGGAGCACCTCAGTTTACCCAATGGACGAGGAAGAATTAGAAGACAAGAGAAGCAATAA

Protein sequence

MVDTGFTTASNILHHISTFISEILAQSDLRKRLLSTVYDNFSLSDEIAQKPLGLAAEALENAISADNSSIKSSSLRCAEELLLSLPENPISSFLLSLIYGLNHQNLNSALRLLDLFLLYPSLARSEIAPTLFEELFLGHFLPIFHWFNEQRSKIVKSLASNLNHNGGGEYSRCEEWEVVPCTKSLSKLSIDQTLKLKELESNYERVLDRNCTDFAEHFKKILERNEESEWIPSPKVKLLNKKEKWKEMEQIVEEKLRTEHLSLPNGRGRIRRQEKQ*

Homology

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BLAST of MELO3C024694 vs. Swiss-Prot
Match: LIN_MEDTR (Putative E3 ubiquitin-protein ligase LIN OS=Medicago truncatula GN=LIN PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 5.3e-09
Identity = 49/200 (24.50%), Postives = 91/200 (45.50%), Query Frame = 1


Query: 44  SDEIAQKPLGLAAEALENAISADNSSIKSSSLRCAEELL------------LSLPENPIS 103
           SD+     L    EALE AI+  N   K + L  AE++L              +P + +S
Sbjct: 63  SDQAVLANLDWGIEALEEAINTYNMETKLARLDYAEKMLQVCAMLNPKQKTAGVPNSYLS 122

Query: 104 SFL---LSLIYGLNHQNLNSALRLLDLFLLYPSLARSEIAPTLFEELFLGHFLPIFHWFN 163
           ++    LS ++ L +   +     L++F++ P  +R + AP L++ LFL H   I  W++
Sbjct: 123 AWAHLNLSYLWKLRNNIKSCIYHSLEMFIVDPFFSRIDFAPELWKNLFLPHMSSIVGWYS 182

Query: 164 EQRSKIVKSLASNLNHNGGGEYSRCEEWEVVPCTKSLSKLSIDQTLKLKELESNYERVLD 223
           E+R K++  +          ++S   +++ V     +  +  +Q  KL++LE  Y   LD
Sbjct: 183 EERHKLMMEVLPE-----STDFSYTADFDKVFNESLVFSMRPNQLEKLQKLEQLYGESLD 242

Query: 224 RNCTDFAEHFKKILERNEES 229
            N   +A+++   +  +  S
Sbjct: 243 ENTRLYAKYYNDCMNPDSTS 257

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BLAST of MELO3C024694 vs. Swiss-Prot
Match: LIN1_LOTJA (Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus japonicus GN=CERBERUS PE=2 SV=2)

HSP 1 Score: 61.6 bits (148), Expect = 1.5e-08
Identity = 49/200 (24.50%), Postives = 88/200 (44.00%), Query Frame = 1


Query: 44  SDEIAQKPLGLAAEALENAISADNSSIKSSSLRCAEELL------------LSLPENPIS 103
           SD+     L    EALE AI+  N   K + L  AE++L              +P + +S
Sbjct: 63  SDQAVLANLDWGIEALEEAINTYNMETKLARLDYAEKMLQVCAMLNPKQKIAGVPNSYLS 122

Query: 104 SFL---LSLIYGLNHQNLNSALRLLDLFLLYPSLARSEIAPTLFEELFLGHFLPIFHWFN 163
           ++    LS ++ L +   N     L++F++ P   R + AP L++ LFL H   I  W++
Sbjct: 123 AWAHLNLSYLWKLRNNVQNCISHALEMFIVDPFFTRIDFAPELWKSLFLPHMSSIVGWYS 182

Query: 164 EQRSKIVKSLASNLNHNGGGEYSRCEEWEVVPCTKSLSKLSIDQTLKLKELESNYERVLD 223
           E+R +++  +  +       + S   ++E       +  +   Q  KL++LE  Y   LD
Sbjct: 183 EERHRLMMEVIPD-----SADLSFTADFEQFFNESLVLTMRPHQLEKLQKLEQLYGESLD 242

Query: 224 RNCTDFAEHFKKILERNEES 229
            N   +A+++   +  +  S
Sbjct: 243 ENTKLYAKYYNDCMNSDSSS 257

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BLAST of MELO3C024694 vs. Swiss-Prot
Match: LIN2_LOTJA (Putative E3 ubiquitin-protein ligase LIN-2 OS=Lotus japonicus GN=LIN PE=1 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.5e-08
Identity = 49/200 (24.50%), Postives = 88/200 (44.00%), Query Frame = 1


Query: 44  SDEIAQKPLGLAAEALENAISADNSSIKSSSLRCAEELL------------LSLPENPIS 103
           SD+     L    EALE AI+  N   K + L  AE++L              +P + +S
Sbjct: 63  SDQAVLANLDWGIEALEEAINTYNMETKLARLDYAEKMLQVCAMLNPKQKIAGVPNSYLS 122

Query: 104 SFL---LSLIYGLNHQNLNSALRLLDLFLLYPSLARSEIAPTLFEELFLGHFLPIFHWFN 163
           ++    LS ++ L +   N     L++F++ P   R + AP L++ LFL H   I  W++
Sbjct: 123 AWAHLNLSYLWKLRNNVQNCISHALEMFIVDPFFTRIDFAPELWKSLFLPHMSSIVGWYS 182

Query: 164 EQRSKIVKSLASNLNHNGGGEYSRCEEWEVVPCTKSLSKLSIDQTLKLKELESNYERVLD 223
           E+R +++  +  +       + S   ++E       +  +   Q  KL++LE  Y   LD
Sbjct: 183 EERHRLMMEVIPD-----SADLSFTADFEQFFNESLVLTMRPHQLEKLQKLEQLYGESLD 242

Query: 224 RNCTDFAEHFKKILERNEES 229
            N   +A+++   +  +  S
Sbjct: 243 ENTKLYAKYYNDCMNSDSSS 257

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BLAST of MELO3C024694 vs. TrEMBL
Match: A0A0A0M114_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G696500 PE=4 SV=1)

HSP 1 Score: 479.6 bits (1233), Expect = 2.6e-132
Identity = 249/269 (92.57%), Postives = 253/269 (94.05%), Query Frame = 1


Query: 1   MVDTGFTTASNILHHISTFISEILAQSDLRKRLLSTVYDNFSLSDEIAQKPLGLAAEALE 60
           MVDTGFTTASNILHHISTFISEIL QSDLRKRLLSTVYDNFSLSDEIA KPLGLAAEALE
Sbjct: 1   MVDTGFTTASNILHHISTFISEILVQSDLRKRLLSTVYDNFSLSDEIALKPLGLAAEALE 60

Query: 61  NAISADNSSIKSSSLRCAEELLLSLPENPISSFLLSLIYGLNHQNLNSALRLLDLFLLYP 120
           NAISADNSSIK+SSLRCAEELLLSLPENPISSFLLSLIYGL HQNLNSAL LLDLFLLYP
Sbjct: 61  NAISADNSSIKTSSLRCAEELLLSLPENPISSFLLSLIYGLKHQNLNSALSLLDLFLLYP 120

Query: 121 SLARSEIAPTLFEELFLGHFLPIFHWFNEQRSKIVKSLASNLNHNGGGEYSR--CEEWEV 180
           SLARSEIAP LFEELFLGHFLPIFHWFNEQRSKI+KSLAS    NGGGEYSR   E WEV
Sbjct: 121 SLARSEIAPILFEELFLGHFLPIFHWFNEQRSKILKSLAS----NGGGEYSRSEAEGWEV 180

Query: 181 VPCTKSLSKLSIDQTLKLKELESNYERVLDRNCTDFAEHFKKILERNEESEWIPSPKVKL 240
           VPCTKSLSKLSIDQTLKLKELESNYERVLDRNC DFAEHFKKILER EESEWI SPKVKL
Sbjct: 181 VPCTKSLSKLSIDQTLKLKELESNYERVLDRNCIDFAEHFKKILERKEESEWIASPKVKL 240

Query: 241 LNKKEKWKEMEQIVEEKLRTEHLSLPNGR 268
           LNKKEKWKEMEQI+E+KLRTEHLSLPNGR
Sbjct: 241 LNKKEKWKEMEQILEDKLRTEHLSLPNGR 265

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BLAST of MELO3C024694 vs. TrEMBL
Match: A0A061GNL9_THECC (Transducin/WD40 repeat-like superfamily protein OS=Theobroma cacao GN=TCM_037843 PE=4 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 1.9e-69
Identity = 145/262 (55.34%), Postives = 192/262 (73.28%), Query Frame = 1


Query: 7   TTASNILHHISTFISEILAQSDLRKRLLSTVYDNFSLSDEIAQKPLGLAAEALENAISAD 66
           TT+S ILHH + F SEIL+QS+LR R+LST+      SD++  KPL LAAE LENA+SA 
Sbjct: 8   TTSSRILHHTTAFTSEILSQSELRHRILSTLRRKLLPSDQLTLKPLNLAAETLENAVSAS 67

Query: 67  NSSIKSSSLRCAEELLLSLPENPISSFLLSLIYGLNHQNLNSALRLLDLFLLYPSLARSE 126
           N+SI+SSSLR A++LLLS PE   SSFLLSLIY L++Q + S+L LL +F L PSLARSE
Sbjct: 68  NASIQSSSLRVAQKLLLSYPEATFSSFLLSLIYSLSNQPIKSSLSLLQVFYLDPSLARSE 127

Query: 127 IAPTLFEELFLGHFLPIFHWFNEQRSKIVKSLASNLNHNGGGEYSRCEEWEVVPCTKSLS 186
           +APTLFE+LFL HFLP+   FNEQRS I+ SL+ N+NH+   +YS C+   VVPC+K LS
Sbjct: 128 LAPTLFEDLFLVHFLPVLQRFNEQRSTILSSLSPNVNHD-ADDYSICDVSVVVPCSKLLS 187

Query: 187 KLSIDQTLKLKELESNYERVLDRNCTDFAEHFKKILERNEESEWIPSPKVKLLNKKEKWK 246
           K+S DQ L+LKELE NYE VLD NC    ++FK++LE +++   + SP   +L + EK +
Sbjct: 188 KMSGDQALELKELERNYEEVLDENCRVLVKYFKEVLENSDDGNRLISPPALVLKQTEKDE 247

Query: 247 EMEQIVEEK-LRTEHLSLPNGR 268
           E++   E+K ++T+ L L NGR
Sbjct: 248 ELDYYQEDKNIKTKELGLKNGR 268

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BLAST of MELO3C024694 vs. TrEMBL
Match: A0A0D2RSS5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G026500 PE=4 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 1.6e-65
Identity = 141/266 (53.01%), Postives = 190/266 (71.43%), Query Frame = 1


Query: 4   TGFTTASNILHHISTFISEILAQSDLRKRLLSTVYDNFSLSDEIAQKPLGLAAEALENAI 63
           T  TT++ ILHH ++F  EIL+QSDLR+++ ST+      SD+I  KPL LAAE LENAI
Sbjct: 3   TTATTSTQILHHTTSFTFEILSQSDLRRQIFSTLRCKLLPSDQITLKPLKLAAETLENAI 62

Query: 64  SADNSSIKSSSLRCAEELLLSLPENPISSFLLSLIYGLNHQNLNSALRLLDLFLLYPSLA 123
           S  N++I+SSSLR AE+LL+S PE   SSFLLSLIY L++Q +NS++ LL +F L PS+A
Sbjct: 63  STSNTAIQSSSLRLAEKLLVSYPETTFSSFLLSLIYALSNQPINSSISLLQVFYLDPSVA 122

Query: 124 RSEIAPTLFEELFLGHFLPIFHWFNEQRSKIVKSLASNLNHNGGGEYSRCEEWEVVPCTK 183
           RSE+APTLFE+LFL HFLP+   FNEQRS I+ SL+ N NH+   +YS C+   VVPC+K
Sbjct: 123 RSELAPTLFEDLFLVHFLPVLQRFNEQRSTILSSLSQNANHD-TDDYSICDVSVVVPCSK 182

Query: 184 SLSKLSIDQTLKLKELESNYERVLDRNCTDFAEHFKKILERNEESEWIPSPKVKLLNKKE 243
            LSK+S DQ L+LKELE NYE VLD NC  F ++FK++L  N+E+  I  P + +  + E
Sbjct: 183 LLSKMSGDQALELKELERNYEEVLDENCRVFVKYFKEVLANNDENRSINPPDL-VFKQSE 242

Query: 244 KWKEMEQIVE--EKLRTEHLSLPNGR 268
           K +E++   E  + ++ + L L NGR
Sbjct: 243 KSEEVDYREEDDDNVKAKELGLKNGR 266

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BLAST of MELO3C024694 vs. TrEMBL
Match: B9RKM7_RICCO (F-box and wd40 domain protein, putative OS=Ricinus communis GN=RCOM_1051840 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 1.4e-56
Identity = 126/266 (47.37%), Postives = 178/266 (66.92%), Query Frame = 1


Query: 4   TGFTTASNILHHISTFISEILAQSDLRKRLLSTVYDNFSLSDEIAQ-KPLGLAAEALENA 63
           T   T+S ILH IS+F+SE L+Q DLR+ L S + +  S S++    KPL LA E LE A
Sbjct: 2   TTAATSSQILHQISSFLSEALSQPDLRRHLFSILRNGTSPSNKTTSVKPLNLALETLEKA 61

Query: 64  ISADNSSIKSSSLRCAEELLLSLPENPISSFLLSLIYGLNHQNLNSALRLLDLFLLYPSL 123
           +SA N  ++SSSLR AE LLLS PE P SSFLLSL+Y L  Q  N+++ LL++F L P L
Sbjct: 62  LSATNPFVQSSSLRLAESLLLSYPETPFSSFLLSLLYSLTQQPTNASISLLNIFYLDPLL 121

Query: 124 ARSEIAPTLFEELFLGHFLPIFHWFNEQRSKIVK-SLASNLNHNGGGEYSRCEEWEVVPC 183
           ARSEIAP +F+ELFL H LP+  WFNEQRS+I   S + N++++   E S C+   ++P 
Sbjct: 122 ARSEIAPLIFQELFLVHLLPVLDWFNEQRSRISSASFSMNMSYDDRDEDSACDVSIILPS 181

Query: 184 TKSLSKLSIDQTLKLKELESNYERVLDRNCTDFAEHFKKILERNEESEWIPSPKVKLLNK 243
           +K LSK+S  Q L+ +ELE +Y+ VLD NC  +A++FK+IL+ N+E+  I  P + +L +
Sbjct: 182 SKLLSKMSGGQALEFRELEGSYDDVLDENCRVYAQYFKEILKNNDENRVITPPSL-ILKE 241

Query: 244 KEKWKEMEQIVEEKLRTEHLSLPNGR 268
             K  ++    ++ ++TE L L NGR
Sbjct: 242 TGKVDKLNGSEDKMIKTEELGLKNGR 266

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BLAST of MELO3C024694 vs. TrEMBL
Match: M5VXQ3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000309mg PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 1.5e-55
Identity = 126/269 (46.84%), Postives = 180/269 (66.91%), Query Frame = 1


Query: 4   TGFTTASNILHHISTFISEILAQSDLRKRLLSTVYDNF-SLSDEIAQKPLGLAAEALENA 63
           T  T++S IL H + F+SE L+Q +LR+ L ST+   F S + + A  PL LAAE LEN 
Sbjct: 2   TTTTSSSQILRHTAAFVSETLSQPELRRHLFSTLRRKFPSSTSQAALNPLNLAAETLENT 61

Query: 64  ISADNSSIKSSSLRCAEELLLSLPENPISSFLLSLIYGLNHQNLNSALRLLDLFLLYPSL 123
           IS+ + +I++SSL  +E+LLL  P NP SS LLSLIYGL  + + +AL LLD+F   PS 
Sbjct: 62  ISSTSPAIRASSLSLSEKLLLKNPLNPFSSLLLSLIYGLYRRPIEAALSLLDIFHTDPSF 121

Query: 124 ARSEIAPTLFEELFLGHFLPIFHWFNEQRSKIVKSLASNLNHNGGGEYSRCEEWEVVPCT 183
           AR+E+AP LFEELFL H LP+ HW+NEQR++I+ +L++N+++    + S  +   V PC+
Sbjct: 122 ARTELAPVLFEELFLVHLLPVLHWYNEQRTQILPTLSTNVSYE-NDDCSISDMSIVFPCS 181

Query: 184 KSLSKLSIDQTLKLKELESNYERVLDRNCTDFAEHFKKILERNEESEWIPSPKVKLLNKK 243
           KSLSK+S  QT +LKELESNYE+VLD NC  F+ +FK++LE  + S  I  P V L    
Sbjct: 182 KSLSKMSGGQTSELKELESNYEKVLDENCRVFSNYFKQVLENKDASRLIDPPTVML---- 241

Query: 244 EKWKEMEQIV----EEKLRTEHLSLPNGR 268
           ++ + ++Q+     E+ ++TE     NGR
Sbjct: 242 KRIERVDQVKYGDDEQGIKTEEPRFENGR 265

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BLAST of MELO3C024694 vs. NCBI nr
Match: gi|659125609|ref|XP_008462773.1| (PREDICTED: putative E3 ubiquitin-protein ligase LIN-1 [Cucumis melo])

HSP 1 Score: 529.3 bits (1362), Expect = 4.2e-147
Identity = 267/267 (100.00%), Postives = 267/267 (100.00%), Query Frame = 1


Query: 1   MVDTGFTTASNILHHISTFISEILAQSDLRKRLLSTVYDNFSLSDEIAQKPLGLAAEALE 60
           MVDTGFTTASNILHHISTFISEILAQSDLRKRLLSTVYDNFSLSDEIAQKPLGLAAEALE
Sbjct: 1   MVDTGFTTASNILHHISTFISEILAQSDLRKRLLSTVYDNFSLSDEIAQKPLGLAAEALE 60

Query: 61  NAISADNSSIKSSSLRCAEELLLSLPENPISSFLLSLIYGLNHQNLNSALRLLDLFLLYP 120
           NAISADNSSIKSSSLRCAEELLLSLPENPISSFLLSLIYGLNHQNLNSALRLLDLFLLYP
Sbjct: 61  NAISADNSSIKSSSLRCAEELLLSLPENPISSFLLSLIYGLNHQNLNSALRLLDLFLLYP 120

Query: 121 SLARSEIAPTLFEELFLGHFLPIFHWFNEQRSKIVKSLASNLNHNGGGEYSRCEEWEVVP 180
           SLARSEIAPTLFEELFLGHFLPIFHWFNEQRSKIVKSLASNLNHNGGGEYSRCEEWEVVP
Sbjct: 121 SLARSEIAPTLFEELFLGHFLPIFHWFNEQRSKIVKSLASNLNHNGGGEYSRCEEWEVVP 180

Query: 181 CTKSLSKLSIDQTLKLKELESNYERVLDRNCTDFAEHFKKILERNEESEWIPSPKVKLLN 240
           CTKSLSKLSIDQTLKLKELESNYERVLDRNCTDFAEHFKKILERNEESEWIPSPKVKLLN
Sbjct: 181 CTKSLSKLSIDQTLKLKELESNYERVLDRNCTDFAEHFKKILERNEESEWIPSPKVKLLN 240

Query: 241 KKEKWKEMEQIVEEKLRTEHLSLPNGR 268
           KKEKWKEMEQIVEEKLRTEHLSLPNGR
Sbjct: 241 KKEKWKEMEQIVEEKLRTEHLSLPNGR 267

[Close]

BLAST of MELO3C024694 vs. NCBI nr
Match: gi|778665432|ref|XP_011648557.1| (PREDICTED: putative E3 ubiquitin-protein ligase LIN-1 [Cucumis sativus])

HSP 1 Score: 479.6 bits (1233), Expect = 3.8e-132
Identity = 249/269 (92.57%), Postives = 253/269 (94.05%), Query Frame = 1


Query: 1   MVDTGFTTASNILHHISTFISEILAQSDLRKRLLSTVYDNFSLSDEIAQKPLGLAAEALE 60
           MVDTGFTTASNILHHISTFISEIL QSDLRKRLLSTVYDNFSLSDEIA KPLGLAAEALE
Sbjct: 1   MVDTGFTTASNILHHISTFISEILVQSDLRKRLLSTVYDNFSLSDEIALKPLGLAAEALE 60

Query: 61  NAISADNSSIKSSSLRCAEELLLSLPENPISSFLLSLIYGLNHQNLNSALRLLDLFLLYP 120
           NAISADNSSIK+SSLRCAEELLLSLPENPISSFLLSLIYGL HQNLNSAL LLDLFLLYP
Sbjct: 61  NAISADNSSIKTSSLRCAEELLLSLPENPISSFLLSLIYGLKHQNLNSALSLLDLFLLYP 120

Query: 121 SLARSEIAPTLFEELFLGHFLPIFHWFNEQRSKIVKSLASNLNHNGGGEYSR--CEEWEV 180
           SLARSEIAP LFEELFLGHFLPIFHWFNEQRSKI+KSLAS    NGGGEYSR   E WEV
Sbjct: 121 SLARSEIAPILFEELFLGHFLPIFHWFNEQRSKILKSLAS----NGGGEYSRSEAEGWEV 180

Query: 181 VPCTKSLSKLSIDQTLKLKELESNYERVLDRNCTDFAEHFKKILERNEESEWIPSPKVKL 240
           VPCTKSLSKLSIDQTLKLKELESNYERVLDRNC DFAEHFKKILER EESEWI SPKVKL
Sbjct: 181 VPCTKSLSKLSIDQTLKLKELESNYERVLDRNCIDFAEHFKKILERKEESEWIASPKVKL 240

Query: 241 LNKKEKWKEMEQIVEEKLRTEHLSLPNGR 268
           LNKKEKWKEMEQI+E+KLRTEHLSLPNGR
Sbjct: 241 LNKKEKWKEMEQILEDKLRTEHLSLPNGR 265

[Close]

BLAST of MELO3C024694 vs. NCBI nr
Match: gi|590577001|ref|XP_007013113.1| (Transducin/WD40 repeat-like superfamily protein [Theobroma cacao])

HSP 1 Score: 270.8 bits (691), Expect = 2.7e-69
Identity = 145/262 (55.34%), Postives = 192/262 (73.28%), Query Frame = 1


Query: 7   TTASNILHHISTFISEILAQSDLRKRLLSTVYDNFSLSDEIAQKPLGLAAEALENAISAD 66
           TT+S ILHH + F SEIL+QS+LR R+LST+      SD++  KPL LAAE LENA+SA 
Sbjct: 8   TTSSRILHHTTAFTSEILSQSELRHRILSTLRRKLLPSDQLTLKPLNLAAETLENAVSAS 67

Query: 67  NSSIKSSSLRCAEELLLSLPENPISSFLLSLIYGLNHQNLNSALRLLDLFLLYPSLARSE 126
           N+SI+SSSLR A++LLLS PE   SSFLLSLIY L++Q + S+L LL +F L PSLARSE
Sbjct: 68  NASIQSSSLRVAQKLLLSYPEATFSSFLLSLIYSLSNQPIKSSLSLLQVFYLDPSLARSE 127

Query: 127 IAPTLFEELFLGHFLPIFHWFNEQRSKIVKSLASNLNHNGGGEYSRCEEWEVVPCTKSLS 186
           +APTLFE+LFL HFLP+   FNEQRS I+ SL+ N+NH+   +YS C+   VVPC+K LS
Sbjct: 128 LAPTLFEDLFLVHFLPVLQRFNEQRSTILSSLSPNVNHD-ADDYSICDVSVVVPCSKLLS 187

Query: 187 KLSIDQTLKLKELESNYERVLDRNCTDFAEHFKKILERNEESEWIPSPKVKLLNKKEKWK 246
           K+S DQ L+LKELE NYE VLD NC    ++FK++LE +++   + SP   +L + EK +
Sbjct: 188 KMSGDQALELKELERNYEEVLDENCRVLVKYFKEVLENSDDGNRLISPPALVLKQTEKDE 247

Query: 247 EMEQIVEEK-LRTEHLSLPNGR 268
           E++   E+K ++T+ L L NGR
Sbjct: 248 ELDYYQEDKNIKTKELGLKNGR 268

[Close]

BLAST of MELO3C024694 vs. NCBI nr
Match: gi|823226047|ref|XP_012445835.1| (PREDICTED: putative E3 ubiquitin-protein ligase LIN [Gossypium raimondii])

HSP 1 Score: 257.7 bits (657), Expect = 2.3e-65
Identity = 141/266 (53.01%), Postives = 190/266 (71.43%), Query Frame = 1


Query: 4   TGFTTASNILHHISTFISEILAQSDLRKRLLSTVYDNFSLSDEIAQKPLGLAAEALENAI 63
           T  TT++ ILHH ++F  EIL+QSDLR+++ ST+      SD+I  KPL LAAE LENAI
Sbjct: 3   TTATTSTQILHHTTSFTFEILSQSDLRRQIFSTLRCKLLPSDQITLKPLKLAAETLENAI 62

Query: 64  SADNSSIKSSSLRCAEELLLSLPENPISSFLLSLIYGLNHQNLNSALRLLDLFLLYPSLA 123
           S  N++I+SSSLR AE+LL+S PE   SSFLLSLIY L++Q +NS++ LL +F L PS+A
Sbjct: 63  STSNTAIQSSSLRLAEKLLVSYPETTFSSFLLSLIYALSNQPINSSISLLQVFYLDPSVA 122

Query: 124 RSEIAPTLFEELFLGHFLPIFHWFNEQRSKIVKSLASNLNHNGGGEYSRCEEWEVVPCTK 183
           RSE+APTLFE+LFL HFLP+   FNEQRS I+ SL+ N NH+   +YS C+   VVPC+K
Sbjct: 123 RSELAPTLFEDLFLVHFLPVLQRFNEQRSTILSSLSQNANHD-TDDYSICDVSVVVPCSK 182

Query: 184 SLSKLSIDQTLKLKELESNYERVLDRNCTDFAEHFKKILERNEESEWIPSPKVKLLNKKE 243
            LSK+S DQ L+LKELE NYE VLD NC  F ++FK++L  N+E+  I  P + +  + E
Sbjct: 183 LLSKMSGDQALELKELERNYEEVLDENCRVFVKYFKEVLANNDENRSINPPDL-VFKQSE 242

Query: 244 KWKEMEQIVE--EKLRTEHLSLPNGR 268
           K +E++   E  + ++ + L L NGR
Sbjct: 243 KSEEVDYREEDDDNVKAKELGLKNGR 266

[Close]

BLAST of MELO3C024694 vs. NCBI nr
Match: gi|802627550|ref|XP_012076733.1| (PREDICTED: putative E3 ubiquitin-protein ligase LIN [Jatropha curcas])

HSP 1 Score: 230.3 bits (586), Expect = 4.0e-57
Identity = 132/262 (50.38%), Postives = 177/262 (67.56%), Query Frame = 1


Query: 7   TTASNILHHISTFISEILAQSDLRKRLLSTVYDNFSLSDEIAQ-KPLGLAAEALENAISA 66
           TTAS+ILHH S F+SE ++QSDLR  +LST+    S   +    K L LA+E LE AISA
Sbjct: 14  TTASHILHHTSAFLSESISQSDLRHHILSTLRRRISPCIQTTSIKTLNLASETLEKAISA 73

Query: 67  DNSSIKSSSLRCAEELLLSLPENPISSFLLSLIYGLNHQNLNSALRLLDLFLLYPSLARS 126
            N  I+SSSLR AE LLLS  + P SSFLLSLIY L  +  N+A+ LL++F + PSL+RS
Sbjct: 74  ANPFIQSSSLRLAERLLLSYRKIPFSSFLLSLIYTLTQEPTNAAINLLNIFYIEPSLSRS 133

Query: 127 EIAPTLFEELFLGHFLPIFHWFNEQRSKIVKSLASNLNHNGGGEYSRCEEWEVVPCTKSL 186
           EIAP LFEELFL H LP+  WFNEQRS+I+ SL+ N+ +    E S  +   V+P +K L
Sbjct: 134 EIAPVLFEELFLVHLLPVLQWFNEQRSRILSSLSMNMGYE-SDENSMYDVSVVLPSSKLL 193

Query: 187 SKLSIDQTLKLKELESNYERVLDRNCTDFAEHFKKILERNEESEWIPSPKVKLLNKKEKW 246
           SK+S  Q L+LKELES+YE V+D NC  FA +FK++L  ++E+  I  P + +L +  K 
Sbjct: 194 SKMSGGQALELKELESSYEEVVDENCRVFANYFKEVLGNSDENILITPPSI-VLKEIGKV 253

Query: 247 KEMEQIVEEKLRTEHLSLPNGR 268
            ++E   ++K++TE   L NGR
Sbjct: 254 DKLEGNEDKKIKTEEFGLKNGR 273

The following BLAST results are available for this feature:

BLAST of MELO3C024694 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LIN_MEDTR	5.3e-09	24.50	Putative E3 ubiquitin-protein ligase LIN OS=Medicago truncatula GN=LIN PE=2 SV=1	[more]
LIN1_LOTJA	1.5e-08	24.50	Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus japonicus GN=CERBERUS PE=2 S...	[more]
LIN2_LOTJA	1.5e-08	24.50	Putative E3 ubiquitin-protein ligase LIN-2 OS=Lotus japonicus GN=LIN PE=1 SV=1	[more]

BLAST of MELO3C024694 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M114_CUCSA	2.6e-132	92.57	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G696500 PE=4 SV=1	[more]
A0A061GNL9_THECC	1.9e-69	55.34	Transducin/WD40 repeat-like superfamily protein OS=Theobroma cacao GN=TCM_037843...	[more]
A0A0D2RSS5_GOSRA	1.6e-65	53.01	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G026500 PE=4 SV=1	[more]
B9RKM7_RICCO	1.4e-56	47.37	F-box and wd40 domain protein, putative OS=Ricinus communis GN=RCOM_1051840 PE=4...	[more]
M5VXQ3_PRUPE	1.5e-55	46.84	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000309mg PE=4 SV=1	[more]

BLAST of MELO3C024694 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659125609\|ref\|XP_008462773.1\|	4.2e-147	100.00	PREDICTED: putative E3 ubiquitin-protein ligase LIN-1 [Cucumis melo]	[more]
gi\|778665432\|ref\|XP_011648557.1\|	3.8e-132	92.57	PREDICTED: putative E3 ubiquitin-protein ligase LIN-1 [Cucumis sativus]	[more]
gi\|590577001\|ref\|XP_007013113.1\|	2.7e-69	55.34	Transducin/WD40 repeat-like superfamily protein [Theobroma cacao]	[more]
gi\|823226047\|ref\|XP_012445835.1\|	2.3e-65	53.01	PREDICTED: putative E3 ubiquitin-protein ligase LIN [Gossypium raimondii]	[more]
gi\|802627550\|ref\|XP_012076733.1\|	4.0e-57	50.38	PREDICTED: putative E3 ubiquitin-protein ligase LIN [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016874	ligase activity
molecular_function	GO:0004842	ubiquitin-protein transferase activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU52836	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C024694T1	MELO3C024694T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU52836	MU52836	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35549	FAMILY NOT NAMED	coord: 7..155 score: 2.3E-29coord: 186..238 score: 2.3
None	No IPR available	PANTHER	PTHR35549:SF1	SUBFAMILY NOT NAMED	coord: 7..155 score: 2.3E-29coord: 186..238 score: 2.3

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C024694	Cucurbita maxima (Rimu)	cmameB061
MELO3C024694	Cucurbita maxima (Rimu)	cmameB111
MELO3C024694	Cucurbita moschata (Rifu)	cmomeB052
MELO3C024694	Cucurbita moschata (Rifu)	cmomeB100
MELO3C024694	Wild cucumber (PI 183967)	cpimeB045
MELO3C024694	Cucumber (Chinese Long) v2	cumeB045
MELO3C024694	Watermelon (Charleston Gray)	mewcgB256
MELO3C024694	Watermelon (Charleston Gray)	mewcgB259
MELO3C024694	Watermelon (97103) v1	mewmB291
MELO3C024694	Cucurbita pepo (Zucchini)	cpemeB337
MELO3C024694	Cucurbita pepo (Zucchini)	cpemeB623
MELO3C024694	Bottle gourd (USVL1VR-Ls)	lsimeB401
MELO3C024694	Bottle gourd (USVL1VR-Ls)	lsimeB405
MELO3C024694	Cucumber (Gy14) v2	cgybmeB041
MELO3C024694	Silver-seed gourd	carmeB0037
MELO3C024694	Silver-seed gourd	carmeB0132
MELO3C024694	Cucumber (Chinese Long) v3	cucmeB045
MELO3C024694	Watermelon (97103) v2	mewmbB263
MELO3C024694	Watermelon (97103) v2	mewmbB266
MELO3C024694	Wax gourd	mewgoB303
MELO3C024694	Wax gourd	mewgoB310
MELO3C024694	Cucumber (Gy14) v1	cgymeB544