MELO3C024682 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C024682
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Retrotransposon protein, putative, Ty3-gypsy subclass
Location	chr2 : 20243011 .. 20243891 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAAGCTGGTTGATGAGATGTTAACCTCAGGGGTGATCCGTCCGAGTAATACCCCATATTCAAGTCCCATGTTGCTGGTTAGGATGAAGGATGGAAGTTGGAGATTTTGTATAGACTATAGGGCTTTGAACAATGTCACCATGCCAGACAAATTTCCAATGCCCGTGCTTGAGGAATTTTTTGACGAACTTAATGGAGCACAAATTTTCTCTAAGATCGATCTCAAGGCAGGTTACCATCAGATTAGAATGTGTGCACATGATGTGGAAAAGACAACCTTTAGAACGCACAAAGGTCACTACAAATTCTTAGTCATTACTTTTGGATTAACAAACGCTCCCTTCACATTCCAATCCTTAATGAACACTATATTCAAACCCTATTTAAGGTGATGCGTGTTGGTGTTTTTTGAAGATATCCTCATCTATAGCATAAATTTGGAGGAGCATCTGCAACAATTAGAATTGGTGTTGGAAATATTGGGTGACAACGAGCTCTATGCCAACCTCAACAAATGCAACTTTGCTAGAAGTAGAGTTGGTTATCTTGGGCATTTCATTTCAGGCAAGCGAGTAGAAGTGGACCGAAAGAAGATTAGAGCCATTAAAGAGTGGCCAACACCTACAAACGTTAAAGAAGTGAGAGGATTTATTGGCCTCACAGGTTACTATATGTGCAGCATTATGGAAGTGTGGCAGCCCCGTTGACCCAATTATTGAAGCTAGGTGCCTACAAGTGGACAGAGCAAGCGCAAGTAGCCTTTGAGAAATTGAAAATATCAATGATGACACTGCCTATATTGGCCATGCCGGACTTCACTCTTCCTTTTGAAATTGAGATGGATGCTCCGGTTATGGAGTTGGGCTGTATTAATTGA

mRNA sequence

ATGGAAAAGCTGGTTGATGAGATGTTAACCTCAGGGGTGATCCGTCCGAGTAATACCCCATATTCAAGTCCCATGTTGCTGGTTAGGATGAAGGATGGAAGTTGGAGATTTTGTATAGACTATAGGGCTTTGAACAATGTCACCATGCCAGACAAATTTCCAATGCCCGTGCTTGAGGAATTTTTTGACGAACTTAATGGAGCACAAATTTTCTCTAAGATCGATCTCAAGGCAGGTTACCATCAGATTAGAATGTGTGCACATGATGTGGAAAAGACAACCTTTAGAACGCACAAAGATATCCTCATCTATAGCATAAATTTGGAGGAGCATCTGCAACAATTAGAATTGGTGTTGGAAATATTGGGTGACAACGAGCTCTATGCCAACCTCAACAAATGCAACTTTGCTAGAAGTAGAGTTGGTTATCTTGGGCATTTCATTTCAGGCAAGCGAGTAGAAGTGGACCGAAAGAAGATTAGAGCCATTAAAGAGTGGCCAACACCTACAAACGTTAAAGAACATTATGGAAGTGTGGCAGCCCCGTTGACCCAATTATTGAAGCTAGGTGCCTACAAGTGGACAGAGCAAGCGCAAGTAGCCTTTGAGAAATTGAAAATATCAATGATGACACTGCCTATATTGGCCATGCCGGACTTCACTCTTCCTTTTGAAATTGAGATGGATGCTCCGGTTATGGAGTTGGGCTGTATTAATTGA

Coding sequence (CDS)

ATGGAAAAGCTGGTTGATGAGATGTTAACCTCAGGGGTGATCCGTCCGAGTAATACCCCATATTCAAGTCCCATGTTGCTGGTTAGGATGAAGGATGGAAGTTGGAGATTTTGTATAGACTATAGGGCTTTGAACAATGTCACCATGCCAGACAAATTTCCAATGCCCGTGCTTGAGGAATTTTTTGACGAACTTAATGGAGCACAAATTTTCTCTAAGATCGATCTCAAGGCAGGTTACCATCAGATTAGAATGTGTGCACATGATGTGGAAAAGACAACCTTTAGAACGCACAAAGATATCCTCATCTATAGCATAAATTTGGAGGAGCATCTGCAACAATTAGAATTGGTGTTGGAAATATTGGGTGACAACGAGCTCTATGCCAACCTCAACAAATGCAACTTTGCTAGAAGTAGAGTTGGTTATCTTGGGCATTTCATTTCAGGCAAGCGAGTAGAAGTGGACCGAAAGAAGATTAGAGCCATTAAAGAGTGGCCAACACCTACAAACGTTAAAGAACATTATGGAAGTGTGGCAGCCCCGTTGACCCAATTATTGAAGCTAGGTGCCTACAAGTGGACAGAGCAAGCGCAAGTAGCCTTTGAGAAATTGAAAATATCAATGATGACACTGCCTATATTGGCCATGCCGGACTTCACTCTTCCTTTTGAAATTGAGATGGATGCTCCGGTTATGGAGTTGGGCTGTATTAATTGA

Protein sequence

MEKLVDEMLTSGVIRPSNTPYSSPMLLVRMKDGSWRFCIDYRALNNVTMPDKFPMPVLEEFFDELNGAQIFSKIDLKAGYHQIRMCAHDVEKTTFRTHKDILIYSINLEEHLQQLELVLEILGDNELYANLNKCNFARSRVGYLGHFISGKRVEVDRKKIRAIKEWPTPTNVKEHYGSVAAPLTQLLKLGAYKWTEQAQVAFEKLKISMMTLPILAMPDFTLPFEIEMDAPVMELGCIN*

Homology

[Close]

BLAST of MELO3C024682 vs. Swiss-Prot
Match: POL2_DROME (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster GN=pol PE=3 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 3.6e-30
Identity = 90/301 (29.90%), Postives = 142/301 (47.18%), Query Frame = 1


Query: 1   MEKLVDEMLTSGVIRPSNTPYSSPMLLVRMKDGS-----WRFCIDYRALNNVTMPDKFPM 60
           +E  V EML  G+IR SN+PY+SP  +V  K  +     +R  IDYR LN +T+PD++P+
Sbjct: 222 VENQVQEMLNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVIDYRKLNEITIPDRYPI 281

Query: 61  PVLEEFFDELNGAQIF---------------------SKIDLKAGYHQ-IRM-------- 120
           P ++E   +L   Q F                     +    K+G+++ +RM        
Sbjct: 282 PNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKSGHYEYLRMPFGLRNAP 341

Query: 121 -----CAHDVEKTTFRTH-----KDILIYSINLEEHLQQLELVLEILGDNELYANLNKCN 180
                C +++ +     H      DI+I+S +L EHL  ++LV   L D  L   L+KC 
Sbjct: 342 ATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADANLKLQLDKCE 401

Query: 181 FARSRVGYLGHFISGKRVEVDRKKIRAIKEWPTPTNVKE----------------HYGSV 239
           F +    +LGH ++   ++ +  K++AI  +P PT  KE                +Y  +
Sbjct: 402 FLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYRKFIPNYADI 461

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BLAST of MELO3C024682 vs. Swiss-Prot
Match: YG31B_YEAST (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 94.4 bits (233), Expect = 1.9e-18
Identity = 45/106 (42.45%), Postives = 64/106 (60.38%), Query Frame = 1


Query: 1   MEKLVDEMLTSGVIRPSNTPYSSPMLLVRMKDGSWRFCIDYRALNNVTMPDKFPMPVLEE 60
           + K+V ++L +  I PS +P SSP++LV  KDG++R C+DYR LN  T+ D FP+P ++ 
Sbjct: 612 INKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDN 671

Query: 61  FFDELNGAQIFSKIDLKAGYHQIRMCAHDVEKTTFRTHKDILIYSI 107
               +  AQIF+ +DL +GYHQI M   D  KT F T      Y++
Sbjct: 672 LLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTV 717

HSP 2 Score: 68.2 bits (165), Expect = 1.4e-10
Identity = 45/155 (29.03%), Postives = 73/155 (47.10%), Query Frame = 1


Query: 100 DILIYSINLEEHLQQLELVLEILGDNELYANLNKCNFARSRVGYLGHFISGKRVEVDRKK 159
           DILI+S + EEH + L+ VLE L +  L     KC FA     +LG+ I  +++   + K
Sbjct: 749 DILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPLQHK 808

Query: 160 IRAIKEWPTPTNVKE----------------HYGSVAAPLTQLLKLGAYKWTEQAQVAFE 219
             AI+++PTP  VK+                +   +A P+ QL      +WTE+   A +
Sbjct: 809 CAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQPI-QLFICDKSQWTEKQDKAID 868

Query: 220 KLKISMMTLPILAMPDFTLPFEIEMDAPVMELGCI 239
           KLK ++   P+L   +    + +  DA    +G +
Sbjct: 869 KLKDALCNSPVLVPFNNKANYRLTTDASKDGIGAV 902

[Close]

BLAST of MELO3C024682 vs. Swiss-Prot
Match: YI31B_YEAST (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-I PE=3 SV=2)

HSP 1 Score: 94.4 bits (233), Expect = 1.9e-18
Identity = 45/106 (42.45%), Postives = 64/106 (60.38%), Query Frame = 1


Query: 1   MEKLVDEMLTSGVIRPSNTPYSSPMLLVRMKDGSWRFCIDYRALNNVTMPDKFPMPVLEE 60
           + K+V ++L +  I PS +P SSP++LV  KDG++R C+DYR LN  T+ D FP+P ++ 
Sbjct: 638 INKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDN 697

Query: 61  FFDELNGAQIFSKIDLKAGYHQIRMCAHDVEKTTFRTHKDILIYSI 107
               +  AQIF+ +DL +GYHQI M   D  KT F T      Y++
Sbjct: 698 LLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTV 743

HSP 2 Score: 70.1 bits (170), Expect = 3.8e-11
Identity = 46/155 (29.68%), Postives = 73/155 (47.10%), Query Frame = 1


Query: 100 DILIYSINLEEHLQQLELVLEILGDNELYANLNKCNFARSRVGYLGHFISGKRVEVDRKK 159
           DILI+S + EEH + L+ VLE L +  L     KC FA     +LG+ I  +++   + K
Sbjct: 775 DILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPLQHK 834

Query: 160 IRAIKEWPTPTNVKE----------------HYGSVAAPLTQLLKLGAYKWTEQAQVAFE 219
             AI+++PTP  VK+                +   +A P+ QL      +WTE+   A E
Sbjct: 835 CAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQPI-QLFICDKSQWTEKQDKAIE 894

Query: 220 KLKISMMTLPILAMPDFTLPFEIEMDAPVMELGCI 239
           KLK ++   P+L   +    + +  DA    +G +
Sbjct: 895 KLKAALCNSPVLVPFNNKANYRLTTDASKDGIGAV 928

[Close]

BLAST of MELO3C024682 vs. Swiss-Prot
Match: M860_ARATH (Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana GN=AtMg00860 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 5.4e-18
Identity = 50/131 (38.17%), Postives = 70/131 (53.44%), Query Frame = 1


Query: 112 LQQLELVLEILGDNELYANLNKCNFARSRVGYLGH--FISGKRVEVDRKKIRAIKEWPT- 171
           +  L +VL+I   ++ YAN  KC F + ++ YLGH   ISG+ V  D  K+ A+  WP  
Sbjct: 1   MNHLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEP 60

Query: 172 ---------------PTNVKEHYGSVAAPLTQLLKLGAYKWTEQAQVAFEKLKISMMTLP 225
                               ++YG +  PLT+LLK  + KWTE A +AF+ LK ++ TLP
Sbjct: 61  KNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNSLKWTEMAALAFKALKGAVTTLP 120

[Close]

BLAST of MELO3C024682 vs. Swiss-Prot
Match: POL3_DROME (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=3 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.7e-17
Identity = 58/186 (31.18%), Postives = 90/186 (48.39%), Query Frame = 1


Query: 76  LKAGYHQIRMCAHDVEKTTFRTH-----KDILIYSINLEEHLQQLELVLEILGDNELYAN 135
           LK      + C +D+ +     H      DI+++S +L+EHLQ L LV E L    L   
Sbjct: 338 LKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQ 397

Query: 136 LNKCNFARSRVGYLGHFISGKRVEVDRKKIRAIKEWPTPTNVKE---------------- 195
           L+KC F +    +LGH ++   ++ + +KI AI+++P PT  KE                
Sbjct: 398 LDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIP 457

Query: 196 HYGSVAAPLTQLLKLGAYKWTEQAQV--AFEKLKISMMTLPILAMPDFTLPFEIEMDAPV 239
           ++  +A P+T+ LK      T   +   AF+KLK  +   PIL +PDFT  F +  DA  
Sbjct: 458 NFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTLTTDASD 517

HSP 2 Score: 82.8 bits (203), Expect = 5.6e-15
Identity = 41/102 (40.20%), Postives = 58/102 (56.86%), Query Frame = 1


Query: 1   MEKLVDEMLTSGVIRPSNTPYSSPMLLVRMKDGS-----WRFCIDYRALNNVTMPDKFPM 60
           +E  + +ML  G+IR SN+PY+SP+ +V  K  +     +R  IDYR LN +T+ D+ P+
Sbjct: 223 VESQIQDMLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLNEITVGDRHPI 282

Query: 61  PVLEEFFDELNGAQIFSKIDLKAGYHQIRMCAHDVEKTTFRT 98
           P ++E   +L     F+ IDL  G+HQI M    V KT F T
Sbjct: 283 PNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFST 324

[Close]

BLAST of MELO3C024682 vs. TrEMBL
Match: A5B2I6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043911 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 1.3e-63
Identity = 130/294 (44.22%), Postives = 182/294 (61.90%), Query Frame = 1


Query: 1    MEKLVDEMLTSGVIRPSNTPYSSPMLLVRMKDGSWRFCIDYRALNNVTMPDKFPMPVLEE 60
            +++LV EML +G++RPS +P+SSP+LLV+ KDG WRFCIDYRALN VT+PD+FP+PV++E
Sbjct: 1255 IKRLVQEMLEAGIVRPSLSPFSSPVLLVKKKDGGWRFCIDYRALNKVTVPDRFPIPVIDE 1314

Query: 61   FFDELNGAQIFSKIDLKAGYHQIRMCAHDVEKTTFRTHKD-------------------- 120
              D+L+GA IFSK+DLK+GYHQIR+   D+ KT FRTH+                     
Sbjct: 1315 LLDKLHGATIFSKLDLKSGYHQIRVRQQDIPKTAFRTHEGHYEFLVMPFGLTNAPATFQS 1374

Query: 121  --------------------ILIYSINLEEHLQQLELVLEILGDNELYANLNKCNFARSR 180
                                IL+YS +L+EH   L+ VL IL +++L+ N  KC FA+ +
Sbjct: 1375 LMNRIFWPHLWKFVLVFFYDILVYSKDLKEHCDHLQTVLSILANHQLHVNGKKCLFAKLQ 1434

Query: 181  VGYLGHFISGKRVEVDRKKIRAIKEWPTPTNVK----------------EHYGSVAAPLT 239
            + YLGH +S K V  D  KI A+ EWPTP ++K                E YG+++ PLT
Sbjct: 1435 LEYLGHLVSAKGVAADPNKISAMVEWPTPKSLKELRGFLGLTGYYRRFVEGYGAISWPLT 1494

[Close]

BLAST of MELO3C024682 vs. TrEMBL
Match: A0A0V0IZ28_SOLCH (Putative ovule protein OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 5.0e-63
Identity = 131/294 (44.56%), Postives = 177/294 (60.20%), Query Frame = 1


Query: 1   MEKLVDEMLTSGVIRPSNTPYSSPMLLVRMKDGSWRFCIDYRALNNVTMPDKFPMPVLEE 60
           +E+LV EML +G+I+ S +PYSSP+LLV+ KDGSWRFC+DYRALN++T+PDKFP+P ++E
Sbjct: 481 IERLVKEMLAAGIIKTSTSPYSSPVLLVKKKDGSWRFCVDYRALNDITIPDKFPIPCIDE 540

Query: 61  FFDELNGAQIFSKIDLKAGYHQIRMCAHDVEKTTFRTHKD-------------------- 120
             DEL GA IFSK+DLK+GYHQIR+ A D  KT FRTH+                     
Sbjct: 541 LLDELGGATIFSKLDLKSGYHQIRIQAGDEAKTAFRTHEGHYEFMVMPFGLTNAPSTFQS 600

Query: 121 --------------------ILIYSINLEEHLQQLELVLEILGDNELYANLNKCNFARSR 180
                               ILIYS +   HL  L++VL+IL  N+L  N  KC F + +
Sbjct: 601 LMNDIFRDHLRKFILVFFDDILIYSKDYXSHLGHLKVVLDILKQNQLVINKKKCXFGQLK 660

Query: 181 VGYLGHFISGKRVEVDRKKIRAIKEWPTPTNVK----------------EHYGSVAAPLT 239
           + YLGH IS + V+ D  KI ++  WP+P ++K                + YG +AAPLT
Sbjct: 661 LEYLGHIISSEGVQADPSKIDSMISWPSPRDIKSLRGFLGLTGYYRKFVKDYGKIAAPLT 720

[Close]

BLAST of MELO3C024682 vs. TrEMBL
Match: A0A151R078_CAJCA (Retrovirus-related Pol polyprotein from transposon 297 family OS=Cajanus cajan GN=KK1_043012 PE=4 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 8.6e-63
Identity = 130/294 (44.22%), Postives = 174/294 (59.18%), Query Frame = 1


Query: 1   MEKLVDEMLTSGVIRPSNTPYSSPMLLVRMKDGSWRFCIDYRALNNVTMPDKFPMPVLEE 60
           +EK V EML++GVIRPSN+PYSSP++LV+ KDGSWRFC+DY++LN  T+PDKFP+P++EE
Sbjct: 56  IEKQVAEMLSTGVIRPSNSPYSSPVILVKKKDGSWRFCVDYQSLNKATIPDKFPIPMIEE 115

Query: 61  FFDELNGAQIFSKIDLKAGYHQIRMCAHDVEKTTFRTHK---DILIYSINL--------- 120
             DELNGA  FSKIDLKAGYHQIRM   D+ KTTFRTH+   + L+    L         
Sbjct: 116 LLDELNGAAYFSKIDLKAGYHQIRMYKADIPKTTFRTHQGHYEFLVMPFGLTNAPATFQC 175

Query: 121 ----------------------------EEHLQQLELVLEILGDNELYANLNKCNFARSR 180
                                       E+HLQ L+ VL IL  +   ANL KC F ++ 
Sbjct: 176 AMNAILGPLLRRYVLVFFDDILVYSKSWEDHLQHLKKVLHILEKHRFLANLKKCEFGKTE 235

Query: 181 VGYLGHFISGKRVEVDRKKIRAIKEWPTPTNVKE----------------HYGSVAAPLT 239
           + YLGH +S   V +D +K+ AI +WP P ++K                 +YG +A PLT
Sbjct: 236 LSYLGHIVSKAGVSMDPQKVEAILQWPIPKSIKALRGFLGLTGYYRCFICNYGKIARPLT 295

[Close]

BLAST of MELO3C024682 vs. TrEMBL
Match: A0A0L9V4A1_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g059400 PE=4 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 1.1e-62
Identity = 133/294 (45.24%), Postives = 172/294 (58.50%), Query Frame = 1


Query: 1   MEKLVDEMLTSGVIRPSNTPYSSPMLLVRMKDGSWRFCIDYRALNNVTMPDKFPMPVLEE 60
           +EK V EML +GVIR SN+PYSSP++LV+ KDGSWRFC+DYRALN  T+PDKFP+P++EE
Sbjct: 598 IEKQVAEMLQAGVIRSSNSPYSSPVILVKKKDGSWRFCVDYRALNRATIPDKFPIPLIEE 657

Query: 61  FFDELNGAQIFSKIDLKAGYHQIRMCAHDVEKTTFRTHK---DILI-------------- 120
             DEL GA+ FSK+DLK+GYHQIRM A D+EKT FRTH+   + ++              
Sbjct: 658 LLDELRGAKYFSKVDLKSGYHQIRMGAGDIEKTAFRTHQGHYEFMVMPFGLTNAPATFQS 717

Query: 121 -----------------------YSINLEEHLQQLELVLEILGDNELYANLNKCNFARSR 180
                                  YS   EEHL+ +  VL  L  N   AN  KC F R++
Sbjct: 718 AMNKLLQPYLRKFVLVFFDDILVYSRTWEEHLEHVGTVLRELVANGWVANRKKCEFGRTQ 777

Query: 181 VGYLGHFISGKRVEVDRKKIRAIKEWPTPTNVK----------------EHYGSVAAPLT 239
           +GYLGH IS K VE+D  K+RA+ EW  P  VK                + YG +A PLT
Sbjct: 778 IGYLGHRISEKGVEMDEDKVRAVMEWDKPKTVKALRGFLGLTGYYRRFVKDYGKIARPLT 837

[Close]

BLAST of MELO3C024682 vs. TrEMBL
Match: D1GEG7_BRARP (Disease resistance protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 6.2e-61
Identity = 127/294 (43.20%), Postives = 176/294 (59.86%), Query Frame = 1


Query: 1    MEKLVDEMLTSGVIRPSNTPYSSPMLLVRMKDGSWRFCIDYRALNNVTMPDKFPMPVLEE 60
            ME++V EML +G+IR S +P+SSP+LLV+ KDGSWRFCIDYRALN  T+PDKFP+PV+++
Sbjct: 1802 MEQMVCEMLEAGIIRESTSPFSSPVLLVKKKDGSWRFCIDYRALNKATIPDKFPIPVIDQ 1861

Query: 61   FFDELNGAQIFSKIDLKAGYHQIRMCAHDVEKTTFRT---HKDI---------------- 120
              DEL GA +FSK+DL++GYHQIRM   D+ KT FRT   H +                 
Sbjct: 1862 LLDELYGASVFSKLDLRSGYHQIRMQEEDIPKTAFRTVEGHYEFLVMPFGLTNAPATFQA 1921

Query: 121  ---------------------LIYSINLEEHLQQLELVLEILGDNELYANLNKCNFARSR 180
                                 LIYS  +EEH + L LVL +L +++L AN  KC+F   +
Sbjct: 1922 LMNSIFKPYLRKFVLVFFDDVLIYSKTVEEHAEHLRLVLSVLQEHKLLANRKKCSFGLQQ 1981

Query: 181  VGYLGHFISGKRVEVDRKKIRAIKEWPTPTNVKE----------------HYGSVAAPLT 239
            + YLGH IS   V  D  K + +KEWP P +VK+                 YGS+A PLT
Sbjct: 1982 IEYLGHIISKNGVATDAIKTQCMKEWPLPKSVKQLRGFLGLTGYYRHYVKGYGSIARPLT 2041

[Close]

BLAST of MELO3C024682 vs. TAIR10
Match: ATMG00860.1 (ATMG00860.1 DNA/RNA polymerases superfamily protein)

HSP 1 Score: 92.8 bits (229), Expect = 3.1e-19
Identity = 50/131 (38.17%), Postives = 70/131 (53.44%), Query Frame = 1


Query: 112 LQQLELVLEILGDNELYANLNKCNFARSRVGYLGH--FISGKRVEVDRKKIRAIKEWPT- 171
           +  L +VL+I   ++ YAN  KC F + ++ YLGH   ISG+ V  D  K+ A+  WP  
Sbjct: 1   MNHLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEP 60

Query: 172 ---------------PTNVKEHYGSVAAPLTQLLKLGAYKWTEQAQVAFEKLKISMMTLP 225
                               ++YG +  PLT+LLK  + KWTE A +AF+ LK ++ TLP
Sbjct: 61  KNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNSLKWTEMAALAFKALKGAVTTLP 120

[Close]

BLAST of MELO3C024682 vs. NCBI nr
Match: gi|923672787|ref|XP_013651248.1| (PREDICTED: uncharacterized protein LOC106355935 [Brassica napus])

HSP 1 Score: 260.0 bits (663), Expect = 4.1e-66
Identity = 138/294 (46.94%), Postives = 182/294 (61.90%), Query Frame = 1


Query: 1   MEKLVDEMLTSGVIRPSNTPYSSPMLLVRMKDGSWRFCIDYRALNNVTMPDKFPMPVLEE 60
           MEK+V +ML +G+IR S +P+SSP+LLV+ KDGSWRFCIDYRA+N VT+PDKFP+PV+++
Sbjct: 640 MEKMVGDMLDAGIIRVSTSPFSSPVLLVKKKDGSWRFCIDYRAVNKVTVPDKFPIPVIDQ 699

Query: 61  FFDELNGAQIFSKIDLKAGYHQIRMCAHDVEKTTFRT---HKDIL--------------- 120
             DEL+GA +FSKIDL+AGYHQIRM   D+EKT FRT   H + L               
Sbjct: 700 LLDELHGATVFSKIDLRAGYHQIRMKEADIEKTAFRTVEGHYEFLVMPFGLTNAPATFQA 759

Query: 121 ----------------------IYSINLEEHLQQLELVLEILGDNELYANLNKCNFARSR 180
                                 IYS N E+HL+ L++VLEIL   +L+ANL KC+F  S+
Sbjct: 760 LMNSIFKPYLRVFILVFFDDVLIYSRNEEDHLRHLQIVLEILATQKLFANLKKCSFGLSQ 819

Query: 181 VGYLGHFISGKRVEVDRKKIRAIKEWPTPTNVKE----------------HYGSVAAPLT 239
           V YLGH IS   V  D  K  +++EWP P  VK+                 YG +A PLT
Sbjct: 820 VEYLGHIISKTGVATDTNKTASMREWPIPKTVKQLRGFLGLTGYYRNYVKGYGIIARPLT 879

[Close]

BLAST of MELO3C024682 vs. NCBI nr
Match: gi|727510232|ref|XP_010431367.1| (PREDICTED: uncharacterized protein LOC104715674 [Camelina sativa])

HSP 1 Score: 251.5 bits (641), Expect = 1.5e-63
Identity = 136/294 (46.26%), Postives = 178/294 (60.54%), Query Frame = 1


Query: 1   MEKLVDEMLTSGVIRPSNTPYSSPMLLVRMKDGSWRFCIDYRALNNVTMPDKFPMPVLEE 60
           MEK+V EML SG+IRPS +P+SSP+LLV+ KD SWRFC+DYRALN VT+PDKFP+P++++
Sbjct: 628 MEKMVKEMLESGIIRPSQSPFSSPVLLVKKKDNSWRFCVDYRALNRVTVPDKFPIPMIDQ 687

Query: 61  FFDELNGAQIFSKIDLKAGYHQIRMCAHDVEKTTFRTH---------------------- 120
             DELNGA IFSK+DL+AGYHQIRM   DV KT FRTH                      
Sbjct: 688 LLDELNGAVIFSKLDLRAGYHQIRMKETDVPKTAFRTHDGHYEFLVMPFGLTNAPATFQA 747

Query: 121 -----------KDI-------LIYSINLEEHLQQLELVLEILGDNELYANLNKCNFARSR 180
                      K I       L+YS +L+EHL+ L +V+ IL  N+L+AN  KC F + +
Sbjct: 748 LMNTLFRPYLRKFILVFFDDILVYSTSLKEHLEHLLVVMRILEANQLFANRKKCLFGQPQ 807

Query: 181 VGYLGHFISGKRVEVDRKKIRAIKEWPTPTNVKE----------------HYGSVAAPLT 239
           V YLGH IS K V  D  K  A+ +WPTP +VKE                 YG +A PLT
Sbjct: 808 VEYLGHIISNKGVSTDPAKTLAMTQWPTPKSVKELRGFLGLTGYYRRFIKGYGVLARPLT 867

[Close]

BLAST of MELO3C024682 vs. NCBI nr
Match: gi|147854459|emb|CAN78588.1| (hypothetical protein VITISV_043911 [Vitis vinifera])

HSP 1 Score: 251.1 bits (640), Expect = 1.9e-63
Identity = 130/294 (44.22%), Postives = 182/294 (61.90%), Query Frame = 1


Query: 1    MEKLVDEMLTSGVIRPSNTPYSSPMLLVRMKDGSWRFCIDYRALNNVTMPDKFPMPVLEE 60
            +++LV EML +G++RPS +P+SSP+LLV+ KDG WRFCIDYRALN VT+PD+FP+PV++E
Sbjct: 1255 IKRLVQEMLEAGIVRPSLSPFSSPVLLVKKKDGGWRFCIDYRALNKVTVPDRFPIPVIDE 1314

Query: 61   FFDELNGAQIFSKIDLKAGYHQIRMCAHDVEKTTFRTHKD-------------------- 120
              D+L+GA IFSK+DLK+GYHQIR+   D+ KT FRTH+                     
Sbjct: 1315 LLDKLHGATIFSKLDLKSGYHQIRVRQQDIPKTAFRTHEGHYEFLVMPFGLTNAPATFQS 1374

Query: 121  --------------------ILIYSINLEEHLQQLELVLEILGDNELYANLNKCNFARSR 180
                                IL+YS +L+EH   L+ VL IL +++L+ N  KC FA+ +
Sbjct: 1375 LMNRIFWPHLWKFVLVFFYDILVYSKDLKEHCDHLQTVLSILANHQLHVNGKKCLFAKLQ 1434

Query: 181  VGYLGHFISGKRVEVDRKKIRAIKEWPTPTNVK----------------EHYGSVAAPLT 239
            + YLGH +S K V  D  KI A+ EWPTP ++K                E YG+++ PLT
Sbjct: 1435 LEYLGHLVSAKGVAADPNKISAMVEWPTPKSLKELRGFLGLTGYYRRFVEGYGAISWPLT 1494

[Close]

BLAST of MELO3C024682 vs. NCBI nr
Match: gi|1012323830|gb|KYP35909.1| (Retrovirus-related Pol polyprotein from transposon 297 family [Cajanus cajan])

HSP 1 Score: 248.4 bits (633), Expect = 1.2e-62
Identity = 130/294 (44.22%), Postives = 174/294 (59.18%), Query Frame = 1


Query: 1   MEKLVDEMLTSGVIRPSNTPYSSPMLLVRMKDGSWRFCIDYRALNNVTMPDKFPMPVLEE 60
           +EK V EML++GVIRPSN+PYSSP++LV+ KDGSWRFC+DY++LN  T+PDKFP+P++EE
Sbjct: 56  IEKQVAEMLSTGVIRPSNSPYSSPVILVKKKDGSWRFCVDYQSLNKATIPDKFPIPMIEE 115

Query: 61  FFDELNGAQIFSKIDLKAGYHQIRMCAHDVEKTTFRTHK---DILIYSINL--------- 120
             DELNGA  FSKIDLKAGYHQIRM   D+ KTTFRTH+   + L+    L         
Sbjct: 116 LLDELNGAAYFSKIDLKAGYHQIRMYKADIPKTTFRTHQGHYEFLVMPFGLTNAPATFQC 175

Query: 121 ----------------------------EEHLQQLELVLEILGDNELYANLNKCNFARSR 180
                                       E+HLQ L+ VL IL  +   ANL KC F ++ 
Sbjct: 176 AMNAILGPLLRRYVLVFFDDILVYSKSWEDHLQHLKKVLHILEKHRFLANLKKCEFGKTE 235

Query: 181 VGYLGHFISGKRVEVDRKKIRAIKEWPTPTNVKE----------------HYGSVAAPLT 239
           + YLGH +S   V +D +K+ AI +WP P ++K                 +YG +A PLT
Sbjct: 236 LSYLGHIVSKAGVSMDPQKVEAILQWPIPKSIKALRGFLGLTGYYRCFICNYGKIARPLT 295

[Close]

BLAST of MELO3C024682 vs. NCBI nr
Match: gi|920707770|gb|KOM49767.1| (hypothetical protein LR48_Vigan08g059400 [Vigna angularis])

HSP 1 Score: 248.1 bits (632), Expect = 1.6e-62
Identity = 133/294 (45.24%), Postives = 172/294 (58.50%), Query Frame = 1


Query: 1   MEKLVDEMLTSGVIRPSNTPYSSPMLLVRMKDGSWRFCIDYRALNNVTMPDKFPMPVLEE 60
           +EK V EML +GVIR SN+PYSSP++LV+ KDGSWRFC+DYRALN  T+PDKFP+P++EE
Sbjct: 598 IEKQVAEMLQAGVIRSSNSPYSSPVILVKKKDGSWRFCVDYRALNRATIPDKFPIPLIEE 657

Query: 61  FFDELNGAQIFSKIDLKAGYHQIRMCAHDVEKTTFRTHK---DILI-------------- 120
             DEL GA+ FSK+DLK+GYHQIRM A D+EKT FRTH+   + ++              
Sbjct: 658 LLDELRGAKYFSKVDLKSGYHQIRMGAGDIEKTAFRTHQGHYEFMVMPFGLTNAPATFQS 717

Query: 121 -----------------------YSINLEEHLQQLELVLEILGDNELYANLNKCNFARSR 180
                                  YS   EEHL+ +  VL  L  N   AN  KC F R++
Sbjct: 718 AMNKLLQPYLRKFVLVFFDDILVYSRTWEEHLEHVGTVLRELVANGWVANRKKCEFGRTQ 777

Query: 181 VGYLGHFISGKRVEVDRKKIRAIKEWPTPTNVK----------------EHYGSVAAPLT 239
           +GYLGH IS K VE+D  K+RA+ EW  P  VK                + YG +A PLT
Sbjct: 778 IGYLGHRISEKGVEMDEDKVRAVMEWDKPKTVKALRGFLGLTGYYRRFVKDYGKIARPLT 837

The following BLAST results are available for this feature:

BLAST of MELO3C024682 vs. Swiss-Prot


Match Name	E-value	Identity	Description
POL2_DROME	3.6e-30	29.90	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
YG31B_YEAST	1.9e-18	42.45	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
YI31B_YEAST	1.9e-18	42.45	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
M860_ARATH	5.4e-18	38.17	Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana GN=AtMg0...	[more]
POL3_DROME	2.7e-17	31.18	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]

BLAST of MELO3C024682 vs. TrEMBL


Match Name	E-value	Identity	Description
A5B2I6_VITVI	1.3e-63	44.22	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043911 PE=4 SV=1	[more]
A0A0V0IZ28_SOLCH	5.0e-63	44.56	Putative ovule protein OS=Solanum chacoense PE=4 SV=1	[more]
A0A151R078_CAJCA	8.6e-63	44.22	Retrovirus-related Pol polyprotein from transposon 297 family OS=Cajanus cajan G...	[more]
A0A0L9V4A1_PHAAN	1.1e-62	45.24	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g059400 PE=4 SV=1	[more]
D1GEG7_BRARP	6.2e-61	43.20	Disease resistance protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1	[more]

BLAST of MELO3C024682 vs. TAIR10


Match Name	E-value	Identity	Description
ATMG00860.1	3.1e-19	38.17	ATMG00860.1 DNA/RNA polymerases superfamily protein	[more]

BLAST of MELO3C024682 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|923672787\|ref\|XP_013651248.1\|	4.1e-66	46.94	PREDICTED: uncharacterized protein LOC106355935 [Brassica napus]	[more]
gi\|727510232\|ref\|XP_010431367.1\|	1.5e-63	46.26	PREDICTED: uncharacterized protein LOC104715674 [Camelina sativa]	[more]
gi\|147854459\|emb\|CAN78588.1\|	1.9e-63	44.22	hypothetical protein VITISV_043911 [Vitis vinifera]	[more]
gi\|1012323830\|gb\|KYP35909.1\|	1.2e-62	44.22	Retrovirus-related Pol polyprotein from transposon 297 family [Cajanus cajan]	[more]
gi\|920707770\|gb\|KOM49767.1\|	1.6e-62	45.24	hypothetical protein LR48_Vigan08g059400 [Vigna angularis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C024682T1	MELO3C024682T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.10.10.10		coord: 2..107 score: 2.5
None	No IPR available	PANTHER	PTHR24559	FAMILY NOT NAMED	coord: 21..230 score: 1.9
None	No IPR available	PANTHER	PTHR24559:SF186	SUBFAMILY NOT NAMED	coord: 21..230 score: 1.9
None	No IPR available	unknown	SSF56672	DNA/RNA polymerases	coord: 2..236 score: 1.56

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C024682	Silver-seed gourd	carmeB0132
MELO3C024682	Silver-seed gourd	carmeB0896
MELO3C024682	Cucumber (Chinese Long) v3	cucmeB045
MELO3C024682	Watermelon (97103) v2	mewmbB263
MELO3C024682	Watermelon (97103) v2	mewmbB266
MELO3C024682	Wax gourd	mewgoB303
MELO3C024682	Wax gourd	mewgoB310
MELO3C024682	Cucumber (Gy14) v1	cgymeB544
MELO3C024682	Cucurbita maxima (Rimu)	cmameB109
MELO3C024682	Cucurbita maxima (Rimu)	cmameB061
MELO3C024682	Cucurbita moschata (Rifu)	cmomeB052
MELO3C024682	Cucurbita moschata (Rifu)	cmomeB102
MELO3C024682	Wild cucumber (PI 183967)	cpimeB045
MELO3C024682	Cucumber (Chinese Long) v2	cumeB045
MELO3C024682	Watermelon (Charleston Gray)	mewcgB256
MELO3C024682	Watermelon (Charleston Gray)	mewcgB259
MELO3C024682	Watermelon (97103) v1	mewmB290
MELO3C024682	Cucurbita pepo (Zucchini)	cpemeB337
MELO3C024682	Cucurbita pepo (Zucchini)	cpemeB617
MELO3C024682	Bottle gourd (USVL1VR-Ls)	lsimeB401
MELO3C024682	Bottle gourd (USVL1VR-Ls)	lsimeB405
MELO3C024682	Cucumber (Gy14) v2	cgybmeB041