MELO3C024671 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C024671
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
Description50S ribosomal protein L18
Locationchr2 : 20039108 .. 20039305 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAGAGTTGGCTCTACGAGAGTCATCAGCAGCGAAGTTAAAAGGAAATAAAGCAACTTCAAGTCGAGAAATCGGAGAAACCAGTACCGAAAGAAAAGCCGATACAGACGAAATATCGGGGGATCGAAGTAAATTCAAGGTGGAAACGTCGGTCTTCACCAGCAACGATCCCGATTCCTGGCTCTTCCGCGCTTAG

mRNA sequence

ATGACAGAGTTGGCTCTACGAGAGTCATCAGCAGCGAAGTTAAAAGGAAATAAAGCAACTTCAAGTCGAGAAATCGGAGAAACCAGTACCGAAAGAAAAGCCGATACAGACGAAATATCGGGGGATCGAAGTAAATTCAAGGTGGAAACGTCGGTCTTCACCAGCAACGATCCCGATTCCTGGCTCTTCCGCGCTTAG

Coding sequence (CDS)

ATGACAGAGTTGGCTCTACGAGAGTCATCAGCAGCGAAGTTAAAAGGAAATAAAGCAACTTCAAGTCGAGAAATCGGAGAAACCAGTACCGAAAGAAAAGCCGATACAGACGAAATATCGGGGGATCGAAGTAAATTCAAGGTGGAAACGTCGGTCTTCACCAGCAACGATCCCGATTCCTGGCTCTTCCGCGCTTAG

Protein sequence

MTELALRESSAAKLKGNKATSSREIGETSTERKADTDEISGDRSKFKVETSVFTSNDPDSWLFRA*
Homology
[Close]
BLAST of MELO3C024671 vs. NCBI nr
Match: gi|659131694|ref|XP_008465807.1| (PREDICTED: histone-lysine N-methyltransferase ASHR1 isoform X1 [Cucumis melo])

HSP 1 Score: 65.5 bits (158), Expect = 4.1e-08
Identity = 37/71 (52.11%), Postives = 46/71 (64.79%), Query Frame = 1 

Query: 1   MTELALRESSAAKLKGNKATSS------REIGETSTERKADTDEISGDRSKF-KVETSVF 60
           +TE A+R+ S  K K N+ATSS      R IGE   ERK+D DE +GDR+KF KV+  +F
Sbjct: 73  LTESAVRDKSTTKGKKNEATSSCDIGADRNIGEGRNERKSDNDENAGDRNKFKKVKMPIF 132

Query: 61  TSNDPDSWLFR 65
              D DSWLFR
Sbjct: 133 NGEDLDSWLFR 143

[Close]
BLAST of MELO3C024671 vs. NCBI nr
Match: gi|659131696|ref|XP_008465808.1| (PREDICTED: histone-lysine N-methyltransferase ASHR1 isoform X2 [Cucumis melo])

HSP 1 Score: 65.5 bits (158), Expect = 4.1e-08
Identity = 37/71 (52.11%), Postives = 46/71 (64.79%), Query Frame = 1 

Query: 1   MTELALRESSAAKLKGNKATSS------REIGETSTERKADTDEISGDRSKF-KVETSVF 60
           +TE A+R+ S  K K N+ATSS      R IGE   ERK+D DE +GDR+KF KV+  +F
Sbjct: 73  LTESAVRDKSTTKGKKNEATSSCDIGADRNIGEGRNERKSDNDENAGDRNKFKKVKMPIF 132

Query: 61  TSNDPDSWLFR 65
              D DSWLFR
Sbjct: 133 NGEDLDSWLFR 143

[Close]
BLAST of MELO3C024671 vs. NCBI nr
Match: gi|659131700|ref|XP_008465811.1| (PREDICTED: histone-lysine N-methyltransferase ASHR1 isoform X4 [Cucumis melo])

HSP 1 Score: 65.5 bits (158), Expect = 4.1e-08
Identity = 37/71 (52.11%), Postives = 46/71 (64.79%), Query Frame = 1 

Query: 1   MTELALRESSAAKLKGNKATSS------REIGETSTERKADTDEISGDRSKF-KVETSVF 60
           +TE A+R+ S  K K N+ATSS      R IGE   ERK+D DE +GDR+KF KV+  +F
Sbjct: 73  LTESAVRDKSTTKGKKNEATSSCDIGADRNIGEGRNERKSDNDENAGDRNKFKKVKMPIF 132

Query: 61  TSNDPDSWLFR 65
              D DSWLFR
Sbjct: 133 NGEDLDSWLFR 143

[Close]
BLAST of MELO3C024671 vs. NCBI nr
Match: gi|659134102|ref|XP_008467029.1| (PREDICTED: uncharacterized protein LOC103504456, partial [Cucumis melo])

HSP 1 Score: 62.4 bits (150), Expect = 3.4e-07
Identity = 35/66 (53.03%), Postives = 44/66 (66.67%), Query Frame = 1 

Query: 1   MTELALRESSAAKLKGNKATSSREIGETSTERKADTDEISGDRSKF-KVETSVFTSNDPD 60
           M E   + S   K K +KA+SSR++ E +T +K + DE S DRSKF KVE  VFT  DP+
Sbjct: 73  MNESDTQNSPTVKSKNDKASSSRDVEEINT-KKNEPDENSNDRSKFKKVEMPVFTGEDPE 132

Query: 61  SWLFRA 66
           SWLFRA
Sbjct: 133 SWLFRA 137

The following BLAST results are available for this feature:
BLAST of MELO3C024671 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659131694|ref|XP_008465807.1|4.1e-0852.11PREDICTED: histone-lysine N-methyltransferase ASHR1 isoform X1 [Cucumis melo][more]
gi|659131696|ref|XP_008465808.1|4.1e-0852.11PREDICTED: histone-lysine N-methyltransferase ASHR1 isoform X2 [Cucumis melo][more]
gi|659131700|ref|XP_008465811.1|4.1e-0852.11PREDICTED: histone-lysine N-methyltransferase ASHR1 isoform X4 [Cucumis melo][more]
gi|659134102|ref|XP_008467029.1|3.4e-0753.03PREDICTED: uncharacterized protein LOC103504456, partial [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C024671T1MELO3C024671T1mRNA