MELO3C024669 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C024669
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionSulfite reductase [ferredoxin], chloroplastic
Locationchr2 : 20018119 .. 20020372 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTGGCCTAAGGCAAGAGTTAAGACTTTTTATTCACGTACCATCAAGTGAAGCCACCAGGGATTGGAAGGTTTTTGCCGAGTCTCTTCGGGACATCCGGTTGCTGCATCAGAGTAGCATAAAGTTCATGGAGAAGCCCAAGATTTCAGGAGAAAAACAAAACAATGTAGGTGTTGGTCAATCTTCCATGGGTTGCTCTGTTCTGCCTACCAAGAAACAGGGTACTGCCTTGACCTTCAACCAAATAAGATGCTCCTCGCCTGTTAAGAAGCCTGAAGGTAAATTTTTGTCCCAGCACTGGAAAATCAAAAGCTTGGCAGTTGTCAAGGAGGATTTTGACAATCATTGGGTTGTCTCAAGGCTTTTCGAGTTTAACAAGTGGCCTGAAATCTGTAATACACTAAAGTTATACTTTAGTTCAATGTAATTTAAATCTTCTCTCAGCGGAAGTTGCCTTAATCAAACTGAGTAATGGAAAATTGGAAGAACTTATTGAACTACCTGGAAATTGGCAAGCATTTGGTAAGTTCCATCTATAGCTTGAGAAATTGGATAGGATGAAGCATAGCCTTCCAAATGTGGTGTGTGGTTATGGGGGATGGCTAACTATACGTAATTTACCTCTAGACTACTGGTGCAGAAAGACTTTTGAAGCCATTGGTGATCACTTTGAAGGTTTAGAGGCTATTTCAGTTGAAACTTTAAATGACACCAATGTAGTGGAAGCGAAAATTCAAATCAAATGGAACCTCTGTGGTTTTATGCCAGCAACGATAGAAATAGCAGATGAAAATCGTGGAACTTTTTTCCTAAATTATGGTGATATTGAAGTTCTTTGTCCTTCTCCAAAAGTCAAAGGTGATTTACTCTTAAAGGATTTTTTTAATCCTATTGATTTGATTAGAGTTTTACAAGTTATGAAGGATGAAGAAGGTGAAGCTCCTGAGATTGATCCAGAATGGGGTTTCATTAAGGATGCATGAGAATCGTCAAATTTCACAAGAAACCCGCTTGTCTTCATACCAAGAAAATTTCCAGGGAAGTTTCCAGCTTTGTGCTTCCTGGAAAAACCTCCACTTCAGCCTTATTTGGTGGCCAGTTCATTGGAAGTTAATCCTCAGAATGTGAACACAGATACGGCATTAAAGAGGAAAGAGCAAATGGAAGTTATTTCTGTGCAATGCACCTTTTATCTTCCAAAAGTAAAGGCGTGGATAAGAAAATTAAGTTTAGCAAGTCTGTTGGAATCCCTCCAAAAGCCCACCAAGAAGACAACTCAGATGTAGCTTTTTTTCAGCCAGGCCTTATTCTCTCTCCTAGCAGCAAATTAAAAGCTCTCCCTGCATTGCCTGCATTGGAATCAGCATCTTCTCTGTCCTCTTCAAATCAGTCATTAAGTATGGCTAATTCTGACTCCAAATCTTCCAAAGTCAGTTTGAATAATGTTATTAAGCAAGCTGCAAGAGCAAGAGAAGCAAACAAACTTGAGCCATCTCAGAAGTTACCGATTGGTGCATCATTGTTACATGGCTTGAAAAAGGAAAAGAAGCTCAAGAGTTCGAAAGTTCCAAAAAGAAATTATCCTTTGTTCTTTTTTTGAAAAGGAGACAGCCTCTTTATTGATATAATAATAATGAGACAGAAGCTCATAGTACAAGATAATTATACAATGAGCATGTAACCATGGATCAGGAGGTGCATCTGGGCATCTCAACTAGGTTGACGTACCCAATATTACCCTCATCATATCCAAACAAGCTAAAAACCCACCAAAACAAAGGAGTAATGTCCAAAGGCAAAAGAAAAAAGAAAAAAACTAAACAAAAGAAGTACAAAGAAATACAAATATAACCAAAAAGACTATAAGATCACAAATCCAGACTTGTTAGAGGAGGGCTGTCCAAAACAGGTCAGTCATATTCTCGTCTTCTTTAAATCACATCAATCATTGAAGTGGCAGTTCTCAAGCACATCATGTTTCTCTTGTTCTAGGTACTCATATTCCACAAAATTTGAAAGAAGAATCTGTTGCTAGTGTGTGCAGCGAAGAGCTTGAAAGGTATGAGGATGATGAAATTAAAAATTCTGAGGAGTTCCCTGAAGATACGAACAAGGCTTTCGGCCTCTTATTTCAACCTAAAAAAGAGATAATTCCTTCCAAGTGTATGGACTTTTCTTTTACTCCTCTGAAAAAGCAAGATATCCCCCAAAAGCTGCAGACCATCTTGGAAGCCTGTGACATCTCCCTAGCTTAG

mRNA sequence

TCTGGCCTAAGGCAAGAGTTAAGACTTTTTATTCACGTACCATCAAGTGAAGCCACCAGGGATTGGAAGGTTTTTGCCGAGTCTCTTCGGGACATCCGGTTGCTGCATCAGAGTAGCATAAAGTTCATGGAGAAGCCCAAGATTTCAGGAGAAAAACAAAACAATGTAGGTGTTGGTCAATCTTCCATGGGTTGCTCTGTTCTGCCTACCAAGAAACAGGGTACTGCCTTGACCTTCAACCAAATAAGATGCTCCTCGCCTGTTAAGAAGCCTGAAGGTAAATTTTTGTCCCAGCACTGGAAAATCAAAAGCTTGGCAGTTGTCAAGGAGGATTTTGACAATCATTGGGTTGTCTCAAGGCTTTTCGAGTTTAACAAGTGGCCTGAAATCTCGGAAGTTGCCTTAATCAAACTGAGTAATGGAAAATTGGAAGAACTTATTGAACTACCTGGAAATTGGCAAGCATTTGGTTTAGAGGCTATTTCAGTTGAAACTTTAAATGACACCAATGTAGTGGAAGCGAAAATTCAAATCAAATGGAACCTCTGTGGTTTTATGCCAGCAACGATAGAAATAGCAGATGAAAATCGTGGAACTTTTTTCCTAAATTATGGTGATATTGAAGTTCTTTGTCCTTCTCCAAAAGTCAAAGGTGATTTACTCTTAAAGGATTTTTTTAATCCTATTGATTTGATTAGAGTTTTACAAGTTATGAAGGATGAAGAAGGTGAAGCTCCTGAGATTGATCCAGAATGGGAATGTGAACACAGATACGGCATTAAAGAGGAAAGAGCAAATGGAAGTTATTTCTGTGCAATGCACCTTTTATCTTCCAAAAGTAAAGGCGTGGATAAGAAAATTAAGTTTAGCAAGTCTGTTGGAATCCCTCCAAAAGCCCACCAAGAAGACAACTCAGATGTAGCTTTTTTTCAGCCAGGCCTTATTCTCTCTCCTAGCAGCAAATTAAAAGCTCTCCCTGCATTGCCTGCATTGGAATCAGCATCTTCTCTGTCCTCTTCAAATCAGTCATTAAGTATGGCTAATTCTGACTCCAAATCTTCCAAAGTCAGTTTGAATAATGTTATTAAGCAAGCTGCAAGAGCAAGAGAAGCAAACAAACTTGAGCCATCTCAGAAGTTACCGATTGGTACTCATATTCCACAAAATTTGAAAGAAGAATCTGTTGCTAGTGTGTGCAGCGAAGAGCTTGAAAGGTATGAGGATGATGAAATTAAAAATTCTGAGGAGTTCCCTGAAGATACGAACAAGGCTTTCGGCCTCTTATTTCAACCTAAAAAAGAGATAATTCCTTCCAAGTGTATGGACTTTTCTTTTACTCCTCTGAAAAAGCAAGATATCCCCCAAAAGCTGCAGACCATCTTGGAAGCCTGTGACATCTCCCTAGCTTAG

Coding sequence (CDS)

TCTGGCCTAAGGCAAGAGTTAAGACTTTTTATTCACGTACCATCAAGTGAAGCCACCAGGGATTGGAAGGTTTTTGCCGAGTCTCTTCGGGACATCCGGTTGCTGCATCAGAGTAGCATAAAGTTCATGGAGAAGCCCAAGATTTCAGGAGAAAAACAAAACAATGTAGGTGTTGGTCAATCTTCCATGGGTTGCTCTGTTCTGCCTACCAAGAAACAGGGTACTGCCTTGACCTTCAACCAAATAAGATGCTCCTCGCCTGTTAAGAAGCCTGAAGGTAAATTTTTGTCCCAGCACTGGAAAATCAAAAGCTTGGCAGTTGTCAAGGAGGATTTTGACAATCATTGGGTTGTCTCAAGGCTTTTCGAGTTTAACAAGTGGCCTGAAATCTCGGAAGTTGCCTTAATCAAACTGAGTAATGGAAAATTGGAAGAACTTATTGAACTACCTGGAAATTGGCAAGCATTTGGTTTAGAGGCTATTTCAGTTGAAACTTTAAATGACACCAATGTAGTGGAAGCGAAAATTCAAATCAAATGGAACCTCTGTGGTTTTATGCCAGCAACGATAGAAATAGCAGATGAAAATCGTGGAACTTTTTTCCTAAATTATGGTGATATTGAAGTTCTTTGTCCTTCTCCAAAAGTCAAAGGTGATTTACTCTTAAAGGATTTTTTTAATCCTATTGATTTGATTAGAGTTTTACAAGTTATGAAGGATGAAGAAGGTGAAGCTCCTGAGATTGATCCAGAATGGGAATGTGAACACAGATACGGCATTAAAGAGGAAAGAGCAAATGGAAGTTATTTCTGTGCAATGCACCTTTTATCTTCCAAAAGTAAAGGCGTGGATAAGAAAATTAAGTTTAGCAAGTCTGTTGGAATCCCTCCAAAAGCCCACCAAGAAGACAACTCAGATGTAGCTTTTTTTCAGCCAGGCCTTATTCTCTCTCCTAGCAGCAAATTAAAAGCTCTCCCTGCATTGCCTGCATTGGAATCAGCATCTTCTCTGTCCTCTTCAAATCAGTCATTAAGTATGGCTAATTCTGACTCCAAATCTTCCAAAGTCAGTTTGAATAATGTTATTAAGCAAGCTGCAAGAGCAAGAGAAGCAAACAAACTTGAGCCATCTCAGAAGTTACCGATTGGTACTCATATTCCACAAAATTTGAAAGAAGAATCTGTTGCTAGTGTGTGCAGCGAAGAGCTTGAAAGGTATGAGGATGATGAAATTAAAAATTCTGAGGAGTTCCCTGAAGATACGAACAAGGCTTTCGGCCTCTTATTTCAACCTAAAAAAGAGATAATTCCTTCCAAGTGTATGGACTTTTCTTTTACTCCTCTGAAAAAGCAAGATATCCCCCAAAAGCTGCAGACCATCTTGGAAGCCTGTGACATCTCCCTAGCTTAG

Protein sequence

SGLRQELRLFIHVPSSEATRDWKVFAESLRDIRLLHQSSIKFMEKPKISGEKQNNVGVGQSSMGCSVLPTKKQGTALTFNQIRCSSPVKKPEGKFLSQHWKIKSLAVVKEDFDNHWVVSRLFEFNKWPEISEVALIKLSNGKLEELIELPGNWQAFGLEAISVETLNDTNVVEAKIQIKWNLCGFMPATIEIADENRGTFFLNYGDIEVLCPSPKVKGDLLLKDFFNPIDLIRVLQVMKDEEGEAPEIDPEWECEHRYGIKEERANGSYFCAMHLLSSKSKGVDKKIKFSKSVGIPPKAHQEDNSDVAFFQPGLILSPSSKLKALPALPALESASSLSSSNQSLSMANSDSKSSKVSLNNVIKQAARAREANKLEPSQKLPIGTHIPQNLKEESVASVCSEELERYEDDEIKNSEEFPEDTNKAFGLLFQPKKEIIPSKCMDFSFTPLKKQDIPQKLQTILEACDISLA*
Homology
[Close]
BLAST of MELO3C024669 vs. TrEMBL
Match: A0A0A0LY46_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G690320 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 3.5e-28
Identity = 79/102 (77.45%), Postives = 82/102 (80.39%), Query Frame = 1 

Query: 291 KSVGIPPKAHQEDNSDVAFFQPGLILSPSSKLKALPALPALESASSLSSSNQSLSMANSD 350
           KSV I PKAHQEDNSDVAF QPGLILSPS KLK   ALPALES SSLSSS+  LSM NSD
Sbjct: 47  KSVEISPKAHQEDNSDVAFIQPGLILSPSLKLK---ALPALESVSSLSSSSPLLSMGNSD 106

Query: 351 SKSSKVSLNNVIKQAARAREANKLEPSQKLPIGTHIPQNLKE 393
           SKSSKVSLN+VIKQA  AREANKLEP QKL IG  +   LKE
Sbjct: 107 SKSSKVSLNSVIKQA--AREANKLEPFQKLLIGASLRHGLKE 143

[Close]
BLAST of MELO3C024669 vs. NCBI nr
Match: gi|700211699|gb|KGN66795.1| (hypothetical protein Csa_1G690320 [Cucumis sativus])

HSP 1 Score: 134.4 bits (337), Expect = 5.1e-28
Identity = 79/102 (77.45%), Postives = 82/102 (80.39%), Query Frame = 1 

Query: 291 KSVGIPPKAHQEDNSDVAFFQPGLILSPSSKLKALPALPALESASSLSSSNQSLSMANSD 350
           KSV I PKAHQEDNSDVAF QPGLILSPS KLK   ALPALES SSLSSS+  LSM NSD
Sbjct: 47  KSVEISPKAHQEDNSDVAFIQPGLILSPSLKLK---ALPALESVSSLSSSSPLLSMGNSD 106

Query: 351 SKSSKVSLNNVIKQAARAREANKLEPSQKLPIGTHIPQNLKE 393
           SKSSKVSLN+VIKQA  AREANKLEP QKL IG  +   LKE
Sbjct: 107 SKSSKVSLNSVIKQA--AREANKLEPFQKLLIGASLRHGLKE 143

The following BLAST results are available for this feature:
BLAST of MELO3C024669 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LY46_CUCSA3.5e-2877.45Uncharacterized protein OS=Cucumis sativus GN=Csa_1G690320 PE=4 SV=1[more]
BLAST of MELO3C024669 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700211699|gb|KGN66795.1|5.1e-2877.45hypothetical protein Csa_1G690320 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009451 RNA modification
biological_process GO:0001522 pseudouridine synthesis
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0009982 pseudouridine synthase activity
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C024669T1MELO3C024669T1mRNA