MELO3C024665 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C024665
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Rubisco accumulation factor 2, chloroplastic
Location	chr2 : 19898117 .. 19898567 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCTCCTCCACCATCACCAACGCCAATTCTCTCACTTCTCTCTCCTCCATCGCCCACACCACCGCCATCTTCCTTCATCAACCCATAGACTCCCCTCTCCGCCTCTTCCTCCGTCGCCGTTCAAACCCCATTTCCGCCATTATTAACCCTTCCCCTTCCCCCTTAGCCGCAAAGCAACAAGTGTACCAGCCATTCCGCCCCCCTCCCTCTCCTCTTCCCCCTCAATACCGCTCCCTCGACACCGAAGGCAAGCTCAATGTCCTCTCCAACCGCCTCGGCCTCTGGTTCCAGTACGCCCCCCTCATTTCCTCCTTGCTTCAAGAGGGCTTCACTCCTCCCACTCTAGAAGAAATCACCGGAATCAGCGGTGTCCAGCAGAACACCTTCGTCGTTGGCGCTCAGGTTCGCGAATCTTTAGTTCAGTCCAATGACTCCGATCCAGATGTAA

mRNA sequence

ATGCTCTCCTCCACCATCACCAACGCCAATTCTCTCACTTCTCTCTCCTCCATCGCCCACACCACCGCCATCTTCCTTCATCAACCCATAGACTCCCCTCTCCGCCTCTTCCTCCGTCGCCGTTCAAACCCCATTTCCGCCATTATTAACCCTTCCCCTTCCCCCTTAGCCGCAAAGCAACAAGTGTACCAGCCATTCCGCCCCCCTCCCTCTCCTCTTCCCCCTCAATACCGCTCCCTCGACACCGAAGGCAAGCTCAATGTCCTCTCCAACCGCCTCGGCCTCTGGTTCCAGTACGCCCCCCTCATTTCCTCCTTGCTTCAAGAGGGCTTCACTCCTCCCACTCTAGAAGAAATCACCGGAATCAGCGGTGTCCAGCAGAACACCTTCGTCGTTGGCGCTCAGATGTAA

Coding sequence (CDS)

ATGCTCTCCTCCACCATCACCAACGCCAATTCTCTCACTTCTCTCTCCTCCATCGCCCACACCACCGCCATCTTCCTTCATCAACCCATAGACTCCCCTCTCCGCCTCTTCCTCCGTCGCCGTTCAAACCCCATTTCCGCCATTATTAACCCTTCCCCTTCCCCCTTAGCCGCAAAGCAACAAGTGTACCAGCCATTCCGCCCCCCTCCCTCTCCTCTTCCCCCTCAATACCGCTCCCTCGACACCGAAGGCAAGCTCAATGTCCTCTCCAACCGCCTCGGCCTCTGGTTCCAGTACGCCCCCCTCATTTCCTCCTTGCTTCAAGAGGGCTTCACTCCTCCCACTCTAGAAGAAATCACCGGAATCAGCGGTGTCCAGCAGAACACCTTCGTCGTTGGCGCTCAGATGTAA

Protein sequence

MLSSTITNANSLTSLSSIAHTTAIFLHQPIDSPLRLFLRRRSNPISAIINPSPSPLAAKQQVYQPFRPPPSPLPPQYRSLDTEGKLNVLSNRLGLWFQYAPLISSLLQEGFTPPTLEEITGISGVQQNTFVVGAQM*

Homology

[Close]

BLAST of MELO3C024665 vs. Swiss-Prot
Match: RAF1_ARATH (Rubisco accumulation factor 1, chloroplastic OS=Arabidopsis thaliana GN=RAF1 PE=2 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 3.8e-32
Identity = 72/136 (52.94%), Postives = 95/136 (69.85%), Query Frame = 1


Query: 1   MLSSTITNANSLTSLSSIAHTTAIFLHQPIDSPLRLFLRRRSNPISAIINPSPSPLAAKQ 60
           MLS T T  +S  S+ + + T   F  +P+      + +  +   SA+I  S      KQ
Sbjct: 1   MLSLTATTLSS--SIFTQSKTHGFFNTRPV------YRKPFTTITSALIPASNRQAPPKQ 60

Query: 61  QVYQPFRPPPSPLPPQYRSLDTEGKLNVLSNRLGLWFQYAPLISSLLQEGFTPPTLEEIT 120
           Q+YQPFRPPPSP+PP++RSLDT GK+ VL++RLGLWF+YAPLISSL  EGFTPP++EE+T
Sbjct: 61  QLYQPFRPPPSPIPPKFRSLDTAGKIEVLADRLGLWFEYAPLISSLYTEGFTPPSIEELT 120

Query: 121 GISGVQQNTFVVGAQM 137
           GISGV+QN+ +VGAQ+
Sbjct: 121 GISGVEQNSLIVGAQV 128

[Close]

BLAST of MELO3C024665 vs. Swiss-Prot
Match: RAF2_ARATH (Rubisco accumulation factor 2, chloroplastic OS=Arabidopsis thaliana GN=RAF2 PE=1 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 5.6e-28
Identity = 64/133 (48.12%), Postives = 83/133 (62.41%), Query Frame = 1


Query: 11  SLTSLSSIAHTTAIFLHQPIDSPLRLFLRRRSNPISAIINPS-------PSPLAAKQQVY 70
           SL S      TT      PI  P+    R  S  ++A + P        P    A+QQ+Y
Sbjct: 6   SLISSPFTQSTTHGLFTNPITRPVNPLPRTVSFTVTASMIPKRSSANMIPKNPPARQQLY 65

Query: 71  QPFRPPPSPLPPQYRSLDTEGKLNVLSNRLGLWFQYAPLISSLLQEGFTPPTLEEITGIS 130
           QPFRPP SP+P Q+RSLD+ GK+ +L+ R+ LWF+YAPLISSL  +GFTPPT+EE+TGIS
Sbjct: 66  QPFRPPSSPIPTQFRSLDSAGKIEILAGRMALWFEYAPLISSLYTDGFTPPTIEELTGIS 125

Query: 131 GVQQNTFVVGAQM 137
            ++QN  +VGAQ+
Sbjct: 126 SIEQNRLIVGAQV 138

[Close]

BLAST of MELO3C024665 vs. Swiss-Prot
Match: RAF1_ORYSJ (Rubisco accumulation factor 1, chloroplastic OS=Oryza sativa subsp. japonica GN=RAF1 PE=2 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.1e-23
Identity = 51/85 (60.00%), Postives = 63/85 (74.12%), Query Frame = 1


Query: 52  SPSPLAAKQQVYQPFRPPPSPLPPQYRSLDTEGKLNVLSNRLGLWFQYAPLISSLLQEGF 111
           +P P A   Q+YQPF PPPSPLP +Y+ LD   +L VL +RLGLW +YAPLIS+L +EGF
Sbjct: 69  TPPPTAPPDQLYQPFHPPPSPLPDKYKDLDLGQRLAVLRDRLGLWHEYAPLISALSREGF 128

Query: 112 TPPTLEEITGISGVQQNTFVVGAQM 137
           TP ++EE TGISGV+QN+ VV  Q+
Sbjct: 129 TPSSIEEATGISGVEQNSVVVATQV 153

[Close]

BLAST of MELO3C024665 vs. Swiss-Prot
Match: RAF1_MAIZE (Rubisco accumulation factor 1, chloroplastic OS=Zea mays GN=RAF1 PE=1 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 2.4e-23
Identity = 48/85 (56.47%), Postives = 63/85 (74.12%), Query Frame = 1


Query: 52  SPSPLAAKQQVYQPFRPPPSPLPPQYRSLDTEGKLNVLSNRLGLWFQYAPLISSLLQEGF 111
           +P P+A   Q+YQPF PPPSPLPP  R+LD   +L +L +R+GLW +YAPLISSL ++GF
Sbjct: 62  TPPPMAPPGQLYQPFHPPPSPLPPSLRNLDLSERLQILRDRMGLWHEYAPLISSLSRDGF 121

Query: 112 TPPTLEEITGISGVQQNTFVVGAQM 137
            P +++E TGISGV+QN  VV +Q+
Sbjct: 122 NPSSIQEATGISGVEQNCLVVASQV 146

[Close]

BLAST of MELO3C024665 vs. TrEMBL
Match: A0A0A0LY43_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G690280 PE=4 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 9.9e-64
Identity = 124/136 (91.18%), Postives = 131/136 (96.32%), Query Frame = 1


Query: 1   MLSSTITNANSLTSLSSIAHTTAIFLHQPIDSPLRLFLRRRSNPISAIINPSPSPLAAKQ 60
           MLSSTITNANSL+SLSSIAHTT+IFLHQP DSPLRLFLRRR NPISAIINPS S LAAKQ
Sbjct: 1   MLSSTITNANSLSSLSSIAHTTSIFLHQPRDSPLRLFLRRRLNPISAIINPSSSSLAAKQ 60

Query: 61  QVYQPFRPPPSPLPPQYRSLDTEGKLNVLSNRLGLWFQYAPLISSLLQEGFTPPTLEEIT 120
           QVYQPFRPPPSPLPPQYRSLDTEGKLN+LSNRLGLWF+YAPLISSLLQEGFTPP LEEIT
Sbjct: 61  QVYQPFRPPPSPLPPQYRSLDTEGKLNILSNRLGLWFEYAPLISSLLQEGFTPPVLEEIT 120

Query: 121 GISGVQQNTFVVGAQM 137
           GISGVQQN+F+VGAQ+
Sbjct: 121 GISGVQQNSFIVGAQV 136

[Close]

BLAST of MELO3C024665 vs. TrEMBL
Match: F1DGA4_COFAR (Putative uncharacterized protein OS=Coffea arabica GN=MA29G21.11 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 1.1e-33
Identity = 79/136 (58.09%), Postives = 97/136 (71.32%), Query Frame = 1


Query: 1   MLSSTITNANSLTSLSSIAHTTAIFLHQPIDSPLRLFLRRRSNPISAIINPSPSPLAAKQ 60
           MLS T+ N     SLS+    + +  H+ +    R    +  N + A+I P  S  A +Q
Sbjct: 1   MLSLTMINTAKPLSLSTPFLPSLLNPHKLLPPLPR---SKHPNSVVALIIPPKSSAAQQQ 60

Query: 61  QVYQPFRPPPSPLPPQYRSLDTEGKLNVLSNRLGLWFQYAPLISSLLQEGFTPPTLEEIT 120
           Q+YQPFRPPPSPLPPQYR+LDT G+L +LSNRLGLWF+YAPLIS+L QEGFTPPTLEEIT
Sbjct: 61  QLYQPFRPPPSPLPPQYRNLDTNGRLEILSNRLGLWFEYAPLISALFQEGFTPPTLEEIT 120

Query: 121 GISGVQQNTFVVGAQM 137
           GISGV+QN  VV AQ+
Sbjct: 121 GISGVEQNRLVVAAQV 133

[Close]

BLAST of MELO3C024665 vs. TrEMBL
Match: F2Y9E8_COFAR (Putative uncharacterized protein OS=Coffea arabica GN=MA17P03.10 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 6.9e-33
Identity = 78/136 (57.35%), Postives = 96/136 (70.59%), Query Frame = 1


Query: 1   MLSSTITNANSLTSLSSIAHTTAIFLHQPIDSPLRLFLRRRSNPISAIINPSPSPLAAKQ 60
           MLS T+ N     SLS+    + +  H+ +    R    +  N + A+I P  S  A +Q
Sbjct: 1   MLSLTMINTAKPLSLSTPFLPSLLNPHKLLPPLPR---SKHPNSVVALIIPPKSSAAQQQ 60

Query: 61  QVYQPFRPPPSPLPPQYRSLDTEGKLNVLSNRLGLWFQYAPLISSLLQEGFTPPTLEEIT 120
           Q+YQPFRPPPSPLPPQYR+LDT G+L +LSNRLG WF+YAPLIS+L QEGFTPPTLEEIT
Sbjct: 61  QLYQPFRPPPSPLPPQYRNLDTNGRLEILSNRLGPWFEYAPLISALFQEGFTPPTLEEIT 120

Query: 121 GISGVQQNTFVVGAQM 137
           GISGV+QN  VV AQ+
Sbjct: 121 GISGVEQNRLVVAAQV 133

[Close]

BLAST of MELO3C024665 vs. TrEMBL
Match: C0ILP3_COFCA (Putative uncharacterized protein OS=Coffea canephora GN=46C02.11 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 6.9e-33
Identity = 78/136 (57.35%), Postives = 96/136 (70.59%), Query Frame = 1


Query: 1   MLSSTITNANSLTSLSSIAHTTAIFLHQPIDSPLRLFLRRRSNPISAIINPSPSPLAAKQ 60
           MLS T+ N     SLS+    + +  H+ +    R    +  N + A+I P  S  A +Q
Sbjct: 1   MLSLTMINTAKPLSLSTPFLPSLLNPHKLLPPLPR---SKHPNSVVALIIPPKSSAAQQQ 60

Query: 61  QVYQPFRPPPSPLPPQYRSLDTEGKLNVLSNRLGLWFQYAPLISSLLQEGFTPPTLEEIT 120
           Q+YQPFRPPPSPLPPQYR+LDT G+L +LSNRLG WF+YAPLIS+L QEGFTPPTLEEIT
Sbjct: 61  QLYQPFRPPPSPLPPQYRNLDTNGRLEILSNRLGPWFEYAPLISALFQEGFTPPTLEEIT 120

Query: 121 GISGVQQNTFVVGAQM 137
           GISGV+QN  VV AQ+
Sbjct: 121 GISGVEQNRLVVAAQV 133

[Close]

BLAST of MELO3C024665 vs. TrEMBL
Match: M5WAU1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005554mg PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 3.2e-30
Identity = 73/135 (54.07%), Postives = 97/135 (71.85%), Query Frame = 1


Query: 3   SSTITNANSLTSLSSIAHTTAIFLHQPIDSPLRLFLRRRS-NPISAIINPSPSPLAAKQQ 62
           SS   N N+ T+ + +  +T+     P   P  L+ +  S  PISA + PS S  + +QQ
Sbjct: 13  SSFNPNTNTNTNTNLLLFSTSFLNPHP---PPLLYPKPSSLKPISATLTPSSS--SQQQQ 72

Query: 63  VYQPFRPPPSPLPPQYRSLDTEGKLNVLSNRLGLWFQYAPLISSLLQEGFTPPTLEEITG 122
           VYQPFRPPPSP+P ++RSLD  G+L +L+NRLGLW+++APLI SLLQEGFTPPT+EE+TG
Sbjct: 73  VYQPFRPPPSPVPAKFRSLDANGRLEILANRLGLWYEFAPLIPSLLQEGFTPPTIEEVTG 132

Query: 123 ISGVQQNTFVVGAQM 137
           ISGV+QN  VV AQ+
Sbjct: 133 ISGVEQNRLVVAAQV 142

[Close]

BLAST of MELO3C024665 vs. TAIR10
Match: AT5G28500.1 (AT5G28500.1 unknown protein)

HSP 1 Score: 139.0 bits (349), Expect = 2.1e-33
Identity = 72/136 (52.94%), Postives = 95/136 (69.85%), Query Frame = 1


Query: 1   MLSSTITNANSLTSLSSIAHTTAIFLHQPIDSPLRLFLRRRSNPISAIINPSPSPLAAKQ 60
           MLS T T  +S  S+ + + T   F  +P+      + +  +   SA+I  S      KQ
Sbjct: 1   MLSLTATTLSS--SIFTQSKTHGFFNTRPV------YRKPFTTITSALIPASNRQAPPKQ 60

Query: 61  QVYQPFRPPPSPLPPQYRSLDTEGKLNVLSNRLGLWFQYAPLISSLLQEGFTPPTLEEIT 120
           Q+YQPFRPPPSP+PP++RSLDT GK+ VL++RLGLWF+YAPLISSL  EGFTPP++EE+T
Sbjct: 61  QLYQPFRPPPSPIPPKFRSLDTAGKIEVLADRLGLWFEYAPLISSLYTEGFTPPSIEELT 120

Query: 121 GISGVQQNTFVVGAQM 137
           GISGV+QN+ +VGAQ+
Sbjct: 121 GISGVEQNSLIVGAQV 128

[Close]

BLAST of MELO3C024665 vs. TAIR10
Match: AT3G04550.1 (AT3G04550.1 unknown protein)

HSP 1 Score: 125.2 bits (313), Expect = 3.2e-29
Identity = 64/133 (48.12%), Postives = 83/133 (62.41%), Query Frame = 1


Query: 11  SLTSLSSIAHTTAIFLHQPIDSPLRLFLRRRSNPISAIINPS-------PSPLAAKQQVY 70
           SL S      TT      PI  P+    R  S  ++A + P        P    A+QQ+Y
Sbjct: 6   SLISSPFTQSTTHGLFTNPITRPVNPLPRTVSFTVTASMIPKRSSANMIPKNPPARQQLY 65

Query: 71  QPFRPPPSPLPPQYRSLDTEGKLNVLSNRLGLWFQYAPLISSLLQEGFTPPTLEEITGIS 130
           QPFRPP SP+P Q+RSLD+ GK+ +L+ R+ LWF+YAPLISSL  +GFTPPT+EE+TGIS
Sbjct: 66  QPFRPPSSPIPTQFRSLDSAGKIEILAGRMALWFEYAPLISSLYTDGFTPPTIEELTGIS 125

Query: 131 GVQQNTFVVGAQM 137
            ++QN  +VGAQ+
Sbjct: 126 SIEQNRLIVGAQV 138

[Close]

BLAST of MELO3C024665 vs. NCBI nr
Match: gi|659125493|ref|XP_008462710.1| (PREDICTED: rubisco accumulation factor 1, chloroplastic [Cucumis melo])

HSP 1 Score: 270.0 bits (689), Expect = 2.3e-69
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 1


Query: 1   MLSSTITNANSLTSLSSIAHTTAIFLHQPIDSPLRLFLRRRSNPISAIINPSPSPLAAKQ 60
           MLSSTITNANSLTSLSSIAHTTAIFLHQPIDSPLRLFLRRRSNPISAIINPSPSPLAAKQ
Sbjct: 1   MLSSTITNANSLTSLSSIAHTTAIFLHQPIDSPLRLFLRRRSNPISAIINPSPSPLAAKQ 60

Query: 61  QVYQPFRPPPSPLPPQYRSLDTEGKLNVLSNRLGLWFQYAPLISSLLQEGFTPPTLEEIT 120
           QVYQPFRPPPSPLPPQYRSLDTEGKLNVLSNRLGLWFQYAPLISSLLQEGFTPPTLEEIT
Sbjct: 61  QVYQPFRPPPSPLPPQYRSLDTEGKLNVLSNRLGLWFQYAPLISSLLQEGFTPPTLEEIT 120

Query: 121 GISGVQQNTFVVGAQM 137
           GISGVQQNTFVVGAQ+
Sbjct: 121 GISGVQQNTFVVGAQV 136

[Close]

BLAST of MELO3C024665 vs. NCBI nr
Match: gi|449449643|ref|XP_004142574.1| (PREDICTED: rubisco accumulation factor 1, chloroplastic [Cucumis sativus])

HSP 1 Score: 250.8 bits (639), Expect = 1.4e-63
Identity = 124/136 (91.18%), Postives = 131/136 (96.32%), Query Frame = 1


Query: 1   MLSSTITNANSLTSLSSIAHTTAIFLHQPIDSPLRLFLRRRSNPISAIINPSPSPLAAKQ 60
           MLSSTITNANSL+SLSSIAHTT+IFLHQP DSPLRLFLRRR NPISAIINPS S LAAKQ
Sbjct: 1   MLSSTITNANSLSSLSSIAHTTSIFLHQPRDSPLRLFLRRRLNPISAIINPSSSSLAAKQ 60

Query: 61  QVYQPFRPPPSPLPPQYRSLDTEGKLNVLSNRLGLWFQYAPLISSLLQEGFTPPTLEEIT 120
           QVYQPFRPPPSPLPPQYRSLDTEGKLN+LSNRLGLWF+YAPLISSLLQEGFTPP LEEIT
Sbjct: 61  QVYQPFRPPPSPLPPQYRSLDTEGKLNILSNRLGLWFEYAPLISSLLQEGFTPPVLEEIT 120

Query: 121 GISGVQQNTFVVGAQM 137
           GISGVQQN+F+VGAQ+
Sbjct: 121 GISGVQQNSFIVGAQV 136

[Close]

BLAST of MELO3C024665 vs. NCBI nr
Match: gi|324388030|gb|ADY38792.1| (hypothetical protein MA29G21.11 [Coffea arabica])

HSP 1 Score: 151.0 bits (380), Expect = 1.5e-33
Identity = 79/136 (58.09%), Postives = 97/136 (71.32%), Query Frame = 1


Query: 1   MLSSTITNANSLTSLSSIAHTTAIFLHQPIDSPLRLFLRRRSNPISAIINPSPSPLAAKQ 60
           MLS T+ N     SLS+    + +  H+ +    R    +  N + A+I P  S  A +Q
Sbjct: 1   MLSLTMINTAKPLSLSTPFLPSLLNPHKLLPPLPR---SKHPNSVVALIIPPKSSAAQQQ 60

Query: 61  QVYQPFRPPPSPLPPQYRSLDTEGKLNVLSNRLGLWFQYAPLISSLLQEGFTPPTLEEIT 120
           Q+YQPFRPPPSPLPPQYR+LDT G+L +LSNRLGLWF+YAPLIS+L QEGFTPPTLEEIT
Sbjct: 61  QLYQPFRPPPSPLPPQYRNLDTNGRLEILSNRLGLWFEYAPLISALFQEGFTPPTLEEIT 120

Query: 121 GISGVQQNTFVVGAQM 137
           GISGV+QN  VV AQ+
Sbjct: 121 GISGVEQNRLVVAAQV 133

[Close]

BLAST of MELO3C024665 vs. NCBI nr
Match: gi|167600643|gb|ABZ89185.1| (putative protein [Coffea canephora])

HSP 1 Score: 148.3 bits (373), Expect = 9.9e-33
Identity = 78/136 (57.35%), Postives = 96/136 (70.59%), Query Frame = 1


Query: 1   MLSSTITNANSLTSLSSIAHTTAIFLHQPIDSPLRLFLRRRSNPISAIINPSPSPLAAKQ 60
           MLS T+ N     SLS+    + +  H+ +    R    +  N + A+I P  S  A +Q
Sbjct: 1   MLSLTMINTAKPLSLSTPFLPSLLNPHKLLPPLPR---SKHPNSVVALIIPPKSSAAQQQ 60

Query: 61  QVYQPFRPPPSPLPPQYRSLDTEGKLNVLSNRLGLWFQYAPLISSLLQEGFTPPTLEEIT 120
           Q+YQPFRPPPSPLPPQYR+LDT G+L +LSNRLG WF+YAPLIS+L QEGFTPPTLEEIT
Sbjct: 61  QLYQPFRPPPSPLPPQYRNLDTNGRLEILSNRLGPWFEYAPLISALFQEGFTPPTLEEIT 120

Query: 121 GISGVQQNTFVVGAQM 137
           GISGV+QN  VV AQ+
Sbjct: 121 GISGVEQNRLVVAAQV 133

[Close]

BLAST of MELO3C024665 vs. NCBI nr
Match: gi|326367385|gb|ADZ55303.1| (hypothetical protein MA17P03.10 [Coffea arabica])

HSP 1 Score: 148.3 bits (373), Expect = 9.9e-33
Identity = 78/136 (57.35%), Postives = 96/136 (70.59%), Query Frame = 1


Query: 1   MLSSTITNANSLTSLSSIAHTTAIFLHQPIDSPLRLFLRRRSNPISAIINPSPSPLAAKQ 60
           MLS T+ N     SLS+    + +  H+ +    R    +  N + A+I P  S  A +Q
Sbjct: 1   MLSLTMINTAKPLSLSTPFLPSLLNPHKLLPPLPR---SKHPNSVVALIIPPKSSAAQQQ 60

Query: 61  QVYQPFRPPPSPLPPQYRSLDTEGKLNVLSNRLGLWFQYAPLISSLLQEGFTPPTLEEIT 120
           Q+YQPFRPPPSPLPPQYR+LDT G+L +LSNRLG WF+YAPLIS+L QEGFTPPTLEEIT
Sbjct: 61  QLYQPFRPPPSPLPPQYRNLDTNGRLEILSNRLGPWFEYAPLISALFQEGFTPPTLEEIT 120

Query: 121 GISGVQQNTFVVGAQM 137
           GISGV+QN  VV AQ+
Sbjct: 121 GISGVEQNRLVVAAQV 133

The following BLAST results are available for this feature:

BLAST of MELO3C024665 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RAF1_ARATH	3.8e-32	52.94	Rubisco accumulation factor 1, chloroplastic OS=Arabidopsis thaliana GN=RAF1 PE=...	[more]
RAF2_ARATH	5.6e-28	48.12	Rubisco accumulation factor 2, chloroplastic OS=Arabidopsis thaliana GN=RAF2 PE=...	[more]
RAF1_ORYSJ	1.1e-23	60.00	Rubisco accumulation factor 1, chloroplastic OS=Oryza sativa subsp. japonica GN=...	[more]
RAF1_MAIZE	2.4e-23	56.47	Rubisco accumulation factor 1, chloroplastic OS=Zea mays GN=RAF1 PE=1 SV=1	[more]

BLAST of MELO3C024665 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LY43_CUCSA	9.9e-64	91.18	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G690280 PE=4 SV=1	[more]
F1DGA4_COFAR	1.1e-33	58.09	Putative uncharacterized protein OS=Coffea arabica GN=MA29G21.11 PE=4 SV=1	[more]
F2Y9E8_COFAR	6.9e-33	57.35	Putative uncharacterized protein OS=Coffea arabica GN=MA17P03.10 PE=4 SV=1	[more]
C0ILP3_COFCA	6.9e-33	57.35	Putative uncharacterized protein OS=Coffea canephora GN=46C02.11 PE=4 SV=1	[more]
M5WAU1_PRUPE	3.2e-30	54.07	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005554mg PE=4 SV=1	[more]

BLAST of MELO3C024665 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G28500.1	2.1e-33	52.94	unknown protein	[more]
AT3G04550.1	3.2e-29	48.12	unknown protein	[more]

BLAST of MELO3C024665 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659125493\|ref\|XP_008462710.1\|	2.3e-69	99.26	PREDICTED: rubisco accumulation factor 1, chloroplastic [Cucumis melo]	[more]
gi\|449449643\|ref\|XP_004142574.1\|	1.4e-63	91.18	PREDICTED: rubisco accumulation factor 1, chloroplastic [Cucumis sativus]	[more]
gi\|324388030\|gb\|ADY38792.1\|	1.5e-33	58.09	hypothetical protein MA29G21.11 [Coffea arabica]	[more]
gi\|167600643\|gb\|ABZ89185.1\|	9.9e-33	57.35	putative protein [Coffea canephora]	[more]
gi\|326367385\|gb\|ADZ55303.1\|	9.9e-33	57.35	hypothetical protein MA17P03.10 [Coffea arabica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C024665T1	MELO3C024665T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35299	FAMILY NOT NAMED	coord: 2..135 score: 9.1
None	No IPR available	PANTHER	PTHR35299:SF2	RUBISCO ACCUMULATION FACTOR 1, CHLOROPLASTIC-RELATED	coord: 2..135 score: 9.1

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C024665	Cucumber (Chinese Long) v3	cucmeB045
MELO3C024665	Watermelon (97103) v2	mewmbB262
MELO3C024665	Watermelon (97103) v2	mewmbB264
MELO3C024665	Watermelon (97103) v2	mewmbB266
MELO3C024665	Wax gourd	mewgoB310
MELO3C024665	Cucumber (Gy14) v1	cgymeB484
MELO3C024665	Cucurbita maxima (Rimu)	cmameB109
MELO3C024665	Cucurbita maxima (Rimu)	cmameB071
MELO3C024665	Cucurbita moschata (Rifu)	cmomeB064
MELO3C024665	Cucurbita moschata (Rifu)	cmomeB102
MELO3C024665	Wild cucumber (PI 183967)	cpimeB045
MELO3C024665	Cucumber (Chinese Long) v2	cumeB045
MELO3C024665	Watermelon (Charleston Gray)	mewcgB257
MELO3C024665	Watermelon (Charleston Gray)	mewcgB259
MELO3C024665	Watermelon (97103) v1	mewmB290
MELO3C024665	Watermelon (97103) v1	mewmB292
MELO3C024665	Cucurbita pepo (Zucchini)	cpemeB617
MELO3C024665	Cucurbita pepo (Zucchini)	cpemeB686
MELO3C024665	Bottle gourd (USVL1VR-Ls)	lsimeB401
MELO3C024665	Cucumber (Gy14) v2	cgybmeB041
MELO3C024665	Silver-seed gourd	carmeB0020
MELO3C024665	Silver-seed gourd	carmeB0896