MELO3C024650.2 (gene) Melon (DHL92) v3.6.1

NameMELO3C024650.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionACT11D09.5
Locationchr02 : 20459826 .. 20460237 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATGGATACGGAGTTCCCCGCTGTACAGCCTGAGGATGAACATGTTGCCTGAAGACATGATGAGCGATCGATCTAGCCGGTCCAACGATCGTAGGTTAGGCTCTAGCAGTTAGAAAATGAAGTGCTACATGCAGCAGTTTGAGATGTACTATTCGCGATTGTATGGAAGCTATGACTAATCAGCTAAGGACCATTGCAAAATGGCCTGAGAAAGCTATCACTCGGGAGGACGCGATGGAGGCGCAGGTGATTGAGAATATGCAATCCATCCCGAGCCTTACTATGGCGGAGAAGAGTAAGTGCGTCGTGATAGTGACAGAGAAGGTGTCACTCATGAGAAACTTCATCAAGATGTCTGATCCGATGAAGGTCGCTTACTGTAGAGTCCTCCTCGGCTATGACCCCTAA

mRNA sequence

ATGGCATGGATACGGAGTTCCCCGCTGTACAGCCTGAGGATGAACATGTTGCCTGAAGACATGATGAGCGATCGATCTAGCCGGTCCAACGATCGTAGCAGTTTGAGATGTACTATTCGCGATTGTATGGAAGCTATGACTAATCAGCTAAGGACCATTGCAAAATGGCCTGAGAAAGCTATCACTCGGGAGGACGCGATGGAGGCGCAGGTGATTGAGAATATGCAATCCATCCCGAGCCTTACTATGGCGGAGAAGAGTAAGTGCGTCGTGATAGTGACAGAGAAGGTGTCACTCATGAGAAACTTCATCAAGATGTCTGATCCGATGAAGGTCGCTTACTGTAGAGTCCTCCTCGGCTATGACCCCTAA

Coding sequence (CDS)

ATGGCATGGATACGGAGTTCCCCGCTGTACAGCCTGAGGATGAACATGTTGCCTGAAGACATGATGAGCGATCGATCTAGCCGGTCCAACGATCGTAGCAGTTTGAGATGTACTATTCGCGATTGTATGGAAGCTATGACTAATCAGCTAAGGACCATTGCAAAATGGCCTGAGAAAGCTATCACTCGGGAGGACGCGATGGAGGCGCAGGTGATTGAGAATATGCAATCCATCCCGAGCCTTACTATGGCGGAGAAGAGTAAGTGCGTCGTGATAGTGACAGAGAAGGTGTCACTCATGAGAAACTTCATCAAGATGTCTGATCCGATGAAGGTCGCTTACTGTAGAGTCCTCCTCGGCTATGACCCCTAA

Protein sequence

MAWIRSSPLYSLRMNMLPEDMMSDRSSRSNDRSSLRCTIRDCMEAMTNQLRTIAKWPEKAITREDAMEAQVIENMQSIPSLTMAEKSKCVVIVTEKVSLMRNFIKMSDPMKVAYCRVLLGYDP
BLAST of MELO3C024650.2 vs. NCBI nr
Match: AAS80151.1 (ACT11D09.5 [Cucumis melo])

HSP 1 Score: 71.2 bits (173), Expect = 2.7e-09
Identity = 35/48 (72.92%), Postives = 42/48 (87.50%), Query Frame = 0

Query: 67  MEAQVIENMQSIPSLTMAEKSKCVVIVTEKVSLMRNFIKMSDPMKVAY 115
           M  ++IE+M+SI SLT+ E SKC++IVTEKVSLMRNFIKMSDPMK AY
Sbjct: 1   MAMRMIEHMESISSLTITESSKCIMIVTEKVSLMRNFIKMSDPMKAAY 48

BLAST of MELO3C024650.2 vs. NCBI nr
Match: ADN34114.1 (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 60.8 bits (146), Expect = 3.6e-06
Identity = 36/129 (27.91%), Postives = 71/129 (55.04%), Query Frame = 0

Query: 8   PLYSLRMNMLPEDMMSDRSSRSNDRSSLRC---------------TIRDCMEAMTNQLRT 67
           P+YS  +NM P+D+M  R++R ++R ++                  +R  +E    QL  
Sbjct: 527 PMYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHR 586

Query: 68  IAKWPEKAITREDAMEA--QVIENMQSIPSLTMAEKSKCVVIVTEKVSLMRNFIKMSDPM 120
           IA+WP   + R+DA +   +++ ++++IP LT+ ++ + + I+   V  M+ F+++ D M
Sbjct: 587 IAEWP--ILQRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHM 646

BLAST of MELO3C024650.2 vs. NCBI nr
Match: XP_008441954.1 (PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo])

HSP 1 Score: 58.2 bits (139), Expect = 2.4e-05
Identity = 34/126 (26.98%), Postives = 63/126 (50.00%), Query Frame = 0

Query: 9   LYSLRMNMLPEDMMSDRSSRSNDRSSLRC---------------TIRDCMEAMTNQLRTI 68
           +YS  ++M P++M   R+ ++++R +                   IR  ME    QL+ I
Sbjct: 177 MYSQGVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYETVEVIRSVMEFGNEQLKAI 236

Query: 69  AKWPEKAITREDAMEAQVIENMQSIPSLTMAEKSKCVVIVTEKVSLMRNFIKMSDPMKVA 120
           A WP++    E  M AQV++ +Q IP L   +++K + I+   +  +  F+ +   +K+ 
Sbjct: 237 ADWPKEKRAMEVEMRAQVVKQLQDIPKLRSQDRAKLMQILFRSLEAIEGFLSIPTELKLE 296

BLAST of MELO3C024650.2 vs. TrEMBL
Match: tr|Q6E437|Q6E437_CUCME (ACT11D09.5 OS=Cucumis melo OX=3656 GN=ACT11D0.5 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.8e-09
Identity = 35/48 (72.92%), Postives = 42/48 (87.50%), Query Frame = 0

Query: 67  MEAQVIENMQSIPSLTMAEKSKCVVIVTEKVSLMRNFIKMSDPMKVAY 115
           M  ++IE+M+SI SLT+ E SKC++IVTEKVSLMRNFIKMSDPMK AY
Sbjct: 1   MAMRMIEHMESISSLTITESSKCIMIVTEKVSLMRNFIKMSDPMKAAY 48

BLAST of MELO3C024650.2 vs. TrEMBL
Match: tr|E5GCB5|E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.4e-06
Identity = 36/129 (27.91%), Postives = 71/129 (55.04%), Query Frame = 0

Query: 8   PLYSLRMNMLPEDMMSDRSSRSNDRSSLRC---------------TIRDCMEAMTNQLRT 67
           P+YS  +NM P+D+M  R++R ++R ++                  +R  +E    QL  
Sbjct: 527 PMYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHR 586

Query: 68  IAKWPEKAITREDAMEA--QVIENMQSIPSLTMAEKSKCVVIVTEKVSLMRNFIKMSDPM 120
           IA+WP   + R+DA +   +++ ++++IP LT+ ++ + + I+   V  M+ F+++ D M
Sbjct: 587 IAEWP--ILQRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHM 646

BLAST of MELO3C024650.2 vs. TrEMBL
Match: tr|A0A1S3B4L3|A0A1S3B4L3_CUCME (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.6e-05
Identity = 34/126 (26.98%), Postives = 63/126 (50.00%), Query Frame = 0

Query: 9   LYSLRMNMLPEDMMSDRSSRSNDRSSLRC---------------TIRDCMEAMTNQLRTI 68
           +YS  ++M P++M   R+ ++++R +                   IR  ME    QL+ I
Sbjct: 177 MYSQGVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYETVEVIRSVMEFGNEQLKAI 236

Query: 69  AKWPEKAITREDAMEAQVIENMQSIPSLTMAEKSKCVVIVTEKVSLMRNFIKMSDPMKVA 120
           A WP++    E  M AQV++ +Q IP L   +++K + I+   +  +  F+ +   +K+ 
Sbjct: 237 ADWPKEKRAMEVEMRAQVVKQLQDIPKLRSQDRAKLMQILFRSLEAIEGFLSIPTELKLE 296

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AAS80151.12.7e-0972.92ACT11D09.5 [Cucumis melo][more]
ADN34114.13.6e-0627.91retrotransposon protein [Cucumis melo subsp. melo][more]
XP_008441954.12.4e-0526.98PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|Q6E437|Q6E437_CUCME1.8e-0972.92ACT11D09.5 OS=Cucumis melo OX=3656 GN=ACT11D0.5 PE=4 SV=1[more]
tr|E5GCB5|E5GCB5_CUCME2.4e-0627.91Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
tr|A0A1S3B4L3|A0A1S3B4L3_CUCME1.6e-0526.98uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C024650.2.1MELO3C024650.2.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None