MELO3C024650 (gene) Melon (DHL92) v3.5.1

NameMELO3C024650
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionDynein light chain 1, axonemal
Locationchr2 : 19597230 .. 19597641 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATGGATACGGAGTTCCCCGCTGTACAGCCTGAGGATGAACATGTTGCCTGAAGACATGATGAGCGATCGATCTAGCCGGTCCAACGATCGTAGGTTAGGCTCTAGCAGTTAGAAAATGAAGTGCTACATGCAGCAGTTTGAGATGTACTATTCGCGATTGTATGGAAGCTATGACTAATCAGCTAAGGACCATTGCAAAATGGCCTGAGAAAGCTATCACTCGGGAGGACGCGATGGAGGCGCAGGTGATTGAGAATATGCAATCCATCCCGAGCCTTACTATGGCGGAGAAGAGTAAGTGCGTCGTGATAGTGACAGAGAAGGTGTCACTCATGAGAAACTTCATCAAGATGTCTGATCCGATGAAGGTCGCTTACTGTAGAGTCCTCCTCGGCTATGACCCCTAA

mRNA sequence

ATGGCATGGATACGGAGTTCCCCGCTGTACAGCCTGAGGATGAACATGTTGCCTGAAGACATGATGAGCGATCGATCTAGCCGGTCCAACGATCGTAGCAGTTTGAGATGTACTATTCGCGATTGTATGGAAGCTATGACTAATCAGCTAAGGACCATTGCAAAATGGCCTGAGAAAGCTATCACTCGGGAGGACGCGATGGAGGCGCAGGTGATTGAGAATATGCAATCCATCCCGAGCCTTACTATGGCGGAGAAGAGTAAGTGCGTCGTGATAGTGACAGAGAAGGTGTCACTCATGAGAAACTTCATCAAGATGTCTGATCCGATGAAGGTCGCTTACTGTAGAGTCCTCCTCGGCTATGACCCCTAA

Coding sequence (CDS)

ATGGCATGGATACGGAGTTCCCCGCTGTACAGCCTGAGGATGAACATGTTGCCTGAAGACATGATGAGCGATCGATCTAGCCGGTCCAACGATCGTAGCAGTTTGAGATGTACTATTCGCGATTGTATGGAAGCTATGACTAATCAGCTAAGGACCATTGCAAAATGGCCTGAGAAAGCTATCACTCGGGAGGACGCGATGGAGGCGCAGGTGATTGAGAATATGCAATCCATCCCGAGCCTTACTATGGCGGAGAAGAGTAAGTGCGTCGTGATAGTGACAGAGAAGGTGTCACTCATGAGAAACTTCATCAAGATGTCTGATCCGATGAAGGTCGCTTACTGTAGAGTCCTCCTCGGCTATGACCCCTAA

Protein sequence

MAWIRSSPLYSLRMNMLPEDMMSDRSSRSNDRSSLRCTIRDCMEAMTNQLRTIAKWPEKAITREDAMEAQVIENMQSIPSLTMAEKSKCVVIVTEKVSLMRNFIKMSDPMKVAYCRVLLGYDP*
BLAST of MELO3C024650 vs. TrEMBL
Match: Q6E437_CUCME (ACT11D09.5 OS=Cucumis melo GN=ACT11D0.5 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.0e-10
Identity = 35/48 (72.92%), Postives = 42/48 (87.50%), Query Frame = 1

Query: 67  MEAQVIENMQSIPSLTMAEKSKCVVIVTEKVSLMRNFIKMSDPMKVAY 115
           M  ++IE+M+SI SLT+ E SKC++IVTEKVSLMRNFIKMSDPMK AY
Sbjct: 1   MAMRMIEHMESISSLTITESSKCIMIVTEKVSLMRNFIKMSDPMKAAY 48

BLAST of MELO3C024650 vs. NCBI nr
Match: gi|46095228|gb|AAS80151.1| (ACT11D09.5 [Cucumis melo])

HSP 1 Score: 73.6 bits (179), Expect = 2.8e-10
Identity = 35/48 (72.92%), Postives = 42/48 (87.50%), Query Frame = 1

Query: 67  MEAQVIENMQSIPSLTMAEKSKCVVIVTEKVSLMRNFIKMSDPMKVAY 115
           M  ++IE+M+SI SLT+ E SKC++IVTEKVSLMRNFIKMSDPMK AY
Sbjct: 1   MAMRMIEHMESISSLTITESSKCIMIVTEKVSLMRNFIKMSDPMKAAY 48

BLAST of MELO3C024650 vs. NCBI nr
Match: gi|659093674|ref|XP_008447655.1| (PREDICTED: casein kinase I-like [Cucumis melo])

HSP 1 Score: 68.6 bits (166), Expect = 9.0e-09
Identity = 29/73 (39.73%), Postives = 49/73 (67.12%), Query Frame = 1

Query: 39  IRDCMEAMTNQLRTIAKWPEKAITREDAMEAQVIENMQSIPSLTMAEKSKCVVIVTEKVS 98
           IR+ M+ + +QL+ IA WPE+A  +ED ++ +VI  +QS P   +    KC+++VT+K+ 
Sbjct: 10  IRNAMDCVNDQLKVIANWPERASQKEDTLQREVIMQLQSNPQFCVEGSVKCMMVVTQKLL 69

Query: 99  LMRNFIKMSDPMK 112
           LM+ F+ + D MK
Sbjct: 70  LMKTFLDLPDEMK 82

BLAST of MELO3C024650 vs. NCBI nr
Match: gi|659133698|ref|XP_008466863.1| (PREDICTED: uncharacterized protein LOC103504172 [Cucumis melo])

HSP 1 Score: 67.8 bits (164), Expect = 1.5e-08
Identity = 35/129 (27.13%), Postives = 71/129 (55.04%), Query Frame = 1

Query: 8   PLYSLRMNMLPEDMMSDRSSRSNDRSSLRC---------------TIRDCMEAMTNQLRT 67
           P+YS  +NM P+D+M  R++R ++R ++                  +R  +E    QL  
Sbjct: 379 PMYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRIAIEYGNEQLHR 438

Query: 68  IAKWPEKAITREDAMEA--QVIENMQSIPSLTMAEKSKCVVIVTEKVSLMRNFIKMSDPM 120
           IA+WP   + R+DA +   +++  +++IP LT+ ++ + + I+   +  M+ F+++ D M
Sbjct: 439 IAEWP--ILQRQDATQTRQEIVRQLEAIPELTLMDRCRLMHIIMHNIDDMKAFLEVPDNM 498

BLAST of MELO3C024650 vs. NCBI nr
Match: gi|659082641|ref|XP_008441954.1| (PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo])

HSP 1 Score: 63.9 bits (154), Expect = 2.2e-07
Identity = 34/126 (26.98%), Postives = 63/126 (50.00%), Query Frame = 1

Query: 9   LYSLRMNMLPEDMMSDRSSRSNDRSSLRCT---------------IRDCMEAMTNQLRTI 68
           +YS  ++M P++M   R+ ++++R +                   IR  ME    QL+ I
Sbjct: 177 MYSQGVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYETVEVIRSVMEFGNEQLKAI 236

Query: 69  AKWPEKAITREDAMEAQVIENMQSIPSLTMAEKSKCVVIVTEKVSLMRNFIKMSDPMKVA 120
           A WP++    E  M AQV++ +Q IP L   +++K + I+   +  +  F+ +   +K+ 
Sbjct: 237 ADWPKEKRAMEVEMRAQVVKQLQDIPKLRSQDRAKLMQILFRSLEAIEGFLSIPTELKLE 296

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q6E437_CUCME2.0e-1072.92ACT11D09.5 OS=Cucumis melo GN=ACT11D0.5 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|46095228|gb|AAS80151.1|2.8e-1072.92ACT11D09.5 [Cucumis melo][more]
gi|659093674|ref|XP_008447655.1|9.0e-0939.73PREDICTED: casein kinase I-like [Cucumis melo][more]
gi|659133698|ref|XP_008466863.1|1.5e-0827.13PREDICTED: uncharacterized protein LOC103504172 [Cucumis melo][more]
gi|659082641|ref|XP_008441954.1|2.2e-0726.98PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C024650T1MELO3C024650T1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None