MELO3C024643 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C024643
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionSET-domain protein lysine methyltransferase family protein
Locationchr2 : 19433844 .. 19434224 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACATCCCAAGGCATACAATGCAGCGATGCTCTTCAATTCACGGATACCCCCGACAATGGAATCTCCGTCAAAGCCTTGTGCGATTTACGGGAGGGTGATGTTGTTGCAAACGTTCCTAAACTTGCTTGCCTCACCGTCAAGACCACCAGTGCCTCTTCCATTATAGAAGAAGTCGGTTTGGGTGGCTATCTGGGGCTTTCGGTTGCTCTCATGTATGAGAGAAGTTTAGGGGAGAACTCTAATTGGGCTGGCTATCTCCAGCTTCTGCCTGATGAAGAATGCGTGCCCTTGCTTTGGTCTCTGCAAGATGTAGACCAGTTTCTTTGTGGAACTGAGCTACACAGGGTAAGTCCACTTCCTTTTTCTCTGTTTCTTTAA

mRNA sequence

ATGACATCCCAAGGCATACAATGCAGCGATGCTCTTCAATTCACGGATACCCCCGACAATGGAATCTCCGTCAAAGCCTTGTGCGATTTACGGGAGGGTGATGTTGTTGCAAACGTTCCTAAACTTGCTTGCCTCACCGTCAAGACCACCAGTGCCTCTTCCATTATAGAAGAAGTCGGTTTGGGTGGCTATCTGGGGCTTTCGGTTGCTCTCATGTATGAGAGAAGTTTAGGGGAGAACTCTAATTGGGCTGGCTATCTCCAGCTTCTGCCTGATGAAGAATGCGTGCCCTTGCTTTGGTCTCTGCAAGATGTAGACCAGTTTCTTTGTGGAACTGAGCTACACAGGGTAAGTCCACTTCCTTTTTCTCTGTTTCTTTAA

Coding sequence (CDS)

ATGACATCCCAAGGCATACAATGCAGCGATGCTCTTCAATTCACGGATACCCCCGACAATGGAATCTCCGTCAAAGCCTTGTGCGATTTACGGGAGGGTGATGTTGTTGCAAACGTTCCTAAACTTGCTTGCCTCACCGTCAAGACCACCAGTGCCTCTTCCATTATAGAAGAAGTCGGTTTGGGTGGCTATCTGGGGCTTTCGGTTGCTCTCATGTATGAGAGAAGTTTAGGGGAGAACTCTAATTGGGCTGGCTATCTCCAGCTTCTGCCTGATGAAGAATGCGTGCCCTTGCTTTGGTCTCTGCAAGATGTAGACCAGTTTCTTTGTGGAACTGAGCTACACAGGGTAAGTCCACTTCCTTTTTCTCTGTTTCTTTAA

Protein sequence

MTSQGIQCSDALQFTDTPDNGISVKALCDLREGDVVANVPKLACLTVKTTSASSIIEEVGLGGYLGLSVALMYERSLGENSNWAGYLQLLPDEECVPLLWSLQDVDQFLCGTELHRVSPLPFSLFL*
Homology
[Close]
BLAST of MELO3C024643 vs. TrEMBL
Match: A0A061DJD8_THECC (SET domain-containing protein, putative isoform 1 OS=Theobroma cacao GN=TCM_001657 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 2.1e-39
Identity = 78/115 (67.83%), Postives = 97/115 (84.35%), Query Frame = 1 

Query: 1   MTSQGIQCSDALQFTDTPDNGISVKALCDLREGDVVANVPKLACLTVKTTSASSIIEEVG 60
           M SQGI+ SDA++FTD P+ GISV+ALCDL+ GDVVA +PK ACLT+KT+ A  +IE  G
Sbjct: 13  MKSQGIEFSDAIEFTDCPEQGISVRALCDLKGGDVVAQIPKTACLTIKTSGAREMIEAGG 72

Query: 61  LGGYLGLSVALMYERSLGENSNWAGYLQLLPDEECVPLLWSLQDVDQFLCGTELH 116
           L G LGLSVALMYE+SLG++S WAGYLQLLP +EC+PL+W+L++VD  LCGTELH
Sbjct: 73  LDGSLGLSVALMYEKSLGQDSPWAGYLQLLPSQECLPLVWTLEEVDSLLCGTELH 127

[Close]
BLAST of MELO3C024643 vs. TrEMBL
Match: A0A072VLJ5_MEDTR (SET-domain protein lysine methyltransferase family protein OS=Medicago truncatula GN=MTR_1g077040 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.3e-38
Identity = 77/116 (66.38%), Postives = 93/116 (80.17%), Query Frame = 1 

Query: 1   MTSQGIQCSDALQFTDTPDNGISVKALCDLREGDVVANVPKLACLTVKTTSASSIIEEVG 60
           M S G + S ALQF DTP+ GISVKALC++  GDVVA +PK ACLT+KT+ A  IIE   
Sbjct: 13  MKSNGFEWSSALQFVDTPEEGISVKALCEINAGDVVAKMPKKACLTIKTSGACEIIENAC 72

Query: 61  LGGYLGLSVALMYERSLGENSNWAGYLQLLPDEECVPLLWSLQDVDQFLCGTELHR 117
           LGGYLGL+VA+MYERSL E S W GYLQLLP +EC+PL+WS+++VDQ LCGTELH+
Sbjct: 73  LGGYLGLAVAIMYERSLAEESPWEGYLQLLPQQECLPLVWSVEEVDQLLCGTELHQ 128

[Close]
BLAST of MELO3C024643 vs. TrEMBL
Match: V4SLC3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027575mg PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 6.6e-38
Identity = 79/117 (67.52%), Postives = 94/117 (80.34%), Query Frame = 1 

Query: 1   MTSQGIQCSDALQFTDTPDNGISVKALCDLREGDVVANVPKLACLTVKTTSASSIIEEVG 60
           M SQG++ SDAL F D P+ GISV AL DL+EGD+VA +PK ACLTVKT+ AS IIE  G
Sbjct: 13  MRSQGLEYSDALDFKDDPEQGISVIALGDLKEGDLVATIPKSACLTVKTSGASDIIESAG 72

Query: 61  LGGYLGLSVALMYERSLGENSNWAGYLQLLPDEECVPLLWSLQDVDQFLCGTELHRV 118
           LGG LGL+ ALMYE+SLGE+S WAGYLQLLP +ECVP +WSL++VD  L GTELH +
Sbjct: 73  LGGSLGLAFALMYEKSLGEDSPWAGYLQLLPQQECVPCVWSLEEVDSLLSGTELHEI 129

[Close]
BLAST of MELO3C024643 vs. TrEMBL
Match: A0A0B0NVM1_GOSAR (Ribosomal N-lysine methyltransferase 3 OS=Gossypium arboreum GN=F383_07357 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 8.6e-38
Identity = 77/116 (66.38%), Postives = 92/116 (79.31%), Query Frame = 1 

Query: 1   MTSQGIQCSDALQFTDTPDNGISVKALCDLREGDVVANVPKLACLTVKTTSASSIIEEVG 60
           M SQGIQCSD L F D P  GISV+AL DL EGDVVA +PK ACLT+KT+ A  +IE  G
Sbjct: 13  MKSQGIQCSDTLDFMDCPQQGISVRALSDLHEGDVVAKIPKTACLTIKTSGAREMIESAG 72

Query: 61  LGGYLGLSVALMYERSLGENSNWAGYLQLLPDEECVPLLWSLQDVDQFLCGTELHR 117
           L G+LGLSVALMYE+SL ++S WAGYLQLLP +EC+PL+W+L +VD  L GTELH+
Sbjct: 73  LDGHLGLSVALMYEKSLAQDSPWAGYLQLLPPQECLPLVWTLGEVDSLLSGTELHK 128

[Close]
BLAST of MELO3C024643 vs. TrEMBL
Match: A0A0L9TYN3_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan02g176600 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 1.5e-37
Identity = 76/116 (65.52%), Postives = 94/116 (81.03%), Query Frame = 1 

Query: 1   MTSQGIQCSDALQFTDTPDNGISVKALCDLREGDVVANVPKLACLTVKTTSASSIIEEVG 60
           M S+G Q SDAL+F DTP  GI+V+ALC L EGDVVA +PK ACLT KT+ A  IIEE G
Sbjct: 1   MKSKGFQWSDALEFVDTPGEGIAVRALCQLEEGDVVAKMPKEACLTTKTSGAREIIEEAG 60

Query: 61  LGGYLGLSVALMYERSLGENSNWAGYLQLLPDEECVPLLWSLQDVDQFLCGTELHR 117
           L G+LGL+ A+MYERSLGE+S W GYLQLLP +ECVP++W+L +V++ LCGTELH+
Sbjct: 61  LDGHLGLAFAIMYERSLGEDSPWYGYLQLLPYQECVPIVWTLNEVNELLCGTELHQ 116

[Close]
BLAST of MELO3C024643 vs. TAIR10
Match: AT3G56570.1 (AT3G56570.1 SET domain-containing protein)

HSP 1 Score: 154.1 bits (388), Expect = 5.9e-38
Identity = 71/117 (60.68%), Postives = 89/117 (76.07%), Query Frame = 1 

Query: 1   MTSQGIQCSDALQFTDTPDNGISVKALCDLREGDVVANVPKLACLTVKTTSASSIIEEVG 60
           M + G+ CS+AL   D  ++G+SV+A CDL+EGDVVAN+ K ACLT+KT+ A  +IE   
Sbjct: 13  MQANGVDCSEALNLVDDENDGVSVRAFCDLKEGDVVANISKTACLTIKTSGAREMIESAD 72

Query: 61  LGGYLGLSVALMYERSLGENSNWAGYLQLLPDEECVPLLWSLQDVDQFLCGTELHRV 118
           L G LGLSVALMYERSLGE S WAGYLQ+LP +E +PL+WSL+D+D  L GTELH++
Sbjct: 73  LDGSLGLSVALMYERSLGEESPWAGYLQILPIQEDLPLVWSLEDLDSLLSGTELHKL 129

[Close]
BLAST of MELO3C024643 vs. NCBI nr
Match: gi|659125464|ref|XP_008462698.1| (PREDICTED: N-lysine methyltransferase setd6 [Cucumis melo])

HSP 1 Score: 237.7 bits (605), Expect = 1.2e-59
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1 

Query: 1   MTSQGIQCSDALQFTDTPDNGISVKALCDLREGDVVANVPKLACLTVKTTSASSIIEEVG 60
           MTSQGIQCSDALQFTDTPDNGISVKALCDLREGDVVANVPKLACLTVKTTSASSIIEEVG
Sbjct: 13  MTSQGIQCSDALQFTDTPDNGISVKALCDLREGDVVANVPKLACLTVKTTSASSIIEEVG 72

Query: 61  LGGYLGLSVALMYERSLGENSNWAGYLQLLPDEECVPLLWSLQDVDQFLCGTELHR 117
           LGGYLGLSVALMYERSLGENSNWAGYLQLLPDEECVPLLWSLQDVDQFLCGTELHR
Sbjct: 73  LGGYLGLSVALMYERSLGENSNWAGYLQLLPDEECVPLLWSLQDVDQFLCGTELHR 128

[Close]
BLAST of MELO3C024643 vs. NCBI nr
Match: gi|449453201|ref|XP_004144347.1| (PREDICTED: N-lysine methyltransferase setd6 [Cucumis sativus])

HSP 1 Score: 230.7 bits (587), Expect = 1.4e-57
Identity = 113/116 (97.41%), Postives = 115/116 (99.14%), Query Frame = 1 

Query: 1   MTSQGIQCSDALQFTDTPDNGISVKALCDLREGDVVANVPKLACLTVKTTSASSIIEEVG 60
           MTSQGIQCSDALQFTDTPDNGISVKAL DLREGDVVANVPKLACLTVKTTSASSIIEEVG
Sbjct: 13  MTSQGIQCSDALQFTDTPDNGISVKALYDLREGDVVANVPKLACLTVKTTSASSIIEEVG 72

Query: 61  LGGYLGLSVALMYERSLGENSNWAGYLQLLPDEECVPLLWSLQDVDQFLCGTELHR 117
           LGGYLGLSVALMYERSLGENSNWAGYLQLLPD+ECVPLLWSLQDVDQFLCGTELH+
Sbjct: 73  LGGYLGLSVALMYERSLGENSNWAGYLQLLPDKECVPLLWSLQDVDQFLCGTELHK 128

[Close]
BLAST of MELO3C024643 vs. NCBI nr
Match: gi|590709688|ref|XP_007048622.1| (SET domain-containing protein, putative isoform 1 [Theobroma cacao])

HSP 1 Score: 169.9 bits (429), Expect = 2.9e-39
Identity = 78/115 (67.83%), Postives = 97/115 (84.35%), Query Frame = 1 

Query: 1   MTSQGIQCSDALQFTDTPDNGISVKALCDLREGDVVANVPKLACLTVKTTSASSIIEEVG 60
           M SQGI+ SDA++FTD P+ GISV+ALCDL+ GDVVA +PK ACLT+KT+ A  +IE  G
Sbjct: 13  MKSQGIEFSDAIEFTDCPEQGISVRALCDLKGGDVVAQIPKTACLTIKTSGAREMIEAGG 72

Query: 61  LGGYLGLSVALMYERSLGENSNWAGYLQLLPDEECVPLLWSLQDVDQFLCGTELH 116
           L G LGLSVALMYE+SLG++S WAGYLQLLP +EC+PL+W+L++VD  LCGTELH
Sbjct: 73  LDGSLGLSVALMYEKSLGQDSPWAGYLQLLPSQECLPLVWTLEEVDSLLCGTELH 127

[Close]
BLAST of MELO3C024643 vs. NCBI nr
Match: gi|1021565502|ref|XP_016174106.1| (PREDICTED: ribosomal lysine N-methyltransferase 3 [Arachis ipaensis])

HSP 1 Score: 169.1 bits (427), Expect = 5.0e-39
Identity = 77/116 (66.38%), Postives = 98/116 (84.48%), Query Frame = 1 

Query: 1   MTSQGIQCSDALQFTDTPDNGISVKALCDLREGDVVANVPKLACLTVKTTSASSIIEEVG 60
           M+S G + S+AL+F DTP+ GISV+ALC L+EGD+VA +PK ACLTV+T+ A  IIE+ G
Sbjct: 13  MSSNGFEWSNALEFVDTPEEGISVRALCQLKEGDIVAKMPKEACLTVRTSGARQIIEDAG 72

Query: 61  LGGYLGLSVALMYERSLGENSNWAGYLQLLPDEECVPLLWSLQDVDQFLCGTELHR 117
           LGGYLGL+VA+MYERSLGE S WAGYLQ+LP +ECVPL+W+L +VD+ L GTELH+
Sbjct: 73  LGGYLGLAVAIMYERSLGEESPWAGYLQVLPKQECVPLVWTLNEVDELLHGTELHQ 128

[Close]
BLAST of MELO3C024643 vs. NCBI nr
Match: gi|729424709|ref|XP_010558785.1| (PREDICTED: ribosomal lysine N-methyltransferase 3 [Tarenaya hassleriana])

HSP 1 Score: 167.9 bits (424), Expect = 1.1e-38
Identity = 78/117 (66.67%), Postives = 95/117 (81.20%), Query Frame = 1 

Query: 1   MTSQGIQCSDALQFTDTPDNGISVKALCDLREGDVVANVPKLACLTVKTTSASSIIEEVG 60
           M + G++CSDAL+  D P +G+SV+ LCDL+EGDVVAN+PK ACLT+KT+ A  IIE  G
Sbjct: 14  MRAHGVECSDALRLVDDPQDGVSVRTLCDLKEGDVVANIPKKACLTMKTSGAREIIEAAG 73

Query: 61  LGGYLGLSVALMYERSLGENSNWAGYLQLLPDEECVPLLWSLQDVDQFLCGTELHRV 118
           L GYLGLSVALMYERSLGE S W+GYLQLLP +E +PL+WSL D+D  L GTELH+V
Sbjct: 74  LDGYLGLSVALMYERSLGEQSPWSGYLQLLPLQEDLPLVWSLHDLDSLLLGTELHKV 130

The following BLAST results are available for this feature:
BLAST of MELO3C024643 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A061DJD8_THECC2.1e-3967.83SET domain-containing protein, putative isoform 1 OS=Theobroma cacao GN=TCM_0016... [more]
A0A072VLJ5_MEDTR1.3e-3866.38SET-domain protein lysine methyltransferase family protein OS=Medicago truncatul... [more]
V4SLC3_9ROSI6.6e-3867.52Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027575mg PE=4 SV=1[more]
A0A0B0NVM1_GOSAR8.6e-3866.38Ribosomal N-lysine methyltransferase 3 OS=Gossypium arboreum GN=F383_07357 PE=4 ... [more]
A0A0L9TYN3_PHAAN1.5e-3765.52Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan02g176600 PE=4 SV=1[more]
BLAST of MELO3C024643 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G56570.15.9e-3860.68 SET domain-containing protein[more]
BLAST of MELO3C024643 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659125464|ref|XP_008462698.1|1.2e-59100.00PREDICTED: N-lysine methyltransferase setd6 [Cucumis melo][more]
gi|449453201|ref|XP_004144347.1|1.4e-5797.41PREDICTED: N-lysine methyltransferase setd6 [Cucumis sativus][more]
gi|590709688|ref|XP_007048622.1|2.9e-3967.83SET domain-containing protein, putative isoform 1 [Theobroma cacao][more]
gi|1021565502|ref|XP_016174106.1|5.0e-3966.38PREDICTED: ribosomal lysine N-methyltransferase 3 [Arachis ipaensis][more]
gi|729424709|ref|XP_010558785.1|1.1e-3866.67PREDICTED: ribosomal lysine N-methyltransferase 3 [Tarenaya hassleriana][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR015353Rubisco_LSMT_subst-bd
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032259 methylation
biological_process GO:0018026 peptidyl-lysine monomethylation
cellular_component GO:0005575 cellular_component
molecular_function GO:0008168 methyltransferase activity
molecular_function GO:0016279 protein-lysine N-methyltransferase activity
molecular_function GO:0005515 protein binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU48117melon EST collection version 4.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C024643T1MELO3C024643T1mRNA
MELO3C024643T2MELO3C024643T2mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU48117MU48117transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015353Rubisco LSMT, substrate-binding domainGENE3DG3DSA:3.90.1420.10coord: 171..345
score: 3.
NoneNo IPR availableGENE3DG3DSA:3.90.1410.10coord: 3..77
score: 1.0E-24coord: 126..168
score: 1.0
NoneNo IPR availablePANTHERPTHR13271UNCHARACTERIZED PUTATIVE METHYLTRANSFERASEcoord: 130..363
score: 1.9E-115coord: 1..80
score: 1.9E
NoneNo IPR availablePANTHERPTHR13271:SF30SUBFAMILY NOT NAMEDcoord: 130..363
score: 1.9E-115coord: 1..80
score: 1.9E
NoneNo IPR availableunknownSSF82199SET domaincoord: 5..72
score: 8.83E-12coord: 124..172
score: 2.1

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C024643Watermelon (97103) v1mewmB290
MELO3C024643Watermelon (97103) v2mewmbB262
MELO3C024643Cucurbita maxima (Rimu)cmameB109