MELO3C024630 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C024630
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationchr2 : 19299542 .. 19299793 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGAAGATGAAACGATCACAGAATTTAATGTCAGTGTTTTGGATTTGGCGAATGAATCTTTTGCTCTTAGGGAAAGGCTTTTCGATACAAAATTGGTGAGGAAAGTTTTGAGATTCCTTCTGTCTTGGTTCAACATGAAAGTTACTACTATTGAGGAAGCTAACGACACCGCCACCATGAGACTTGAGGAGTTATTCAGGTCTTTAAGAACATTTGAACTATCATTTAATGATAATGTACAAAAGTAG

mRNA sequence

ATGGCTGAAGATGAAACGATCACAGAATTTAATGTCAGTGTTTTGGATTTGGCGAATGAATCTTTTGCTCTTAGGGAAAGGCTTTTCGATACAAAATTGGTGAGGAAAGTTTTGAGATTCCTTCTGTCTTGGTTCAACATGAAAGTTACTACTATTGAGGAAGCTAACGACACCGCCACCATGAGACTTGAGGAGTTATTCAGGTCTTTAAGAACATTTGAACTATCATTTAATGATAATGTACAAAAGTAG

Coding sequence (CDS)

ATGGCTGAAGATGAAACGATCACAGAATTTAATGTCAGTGTTTTGGATTTGGCGAATGAATCTTTTGCTCTTAGGGAAAGGCTTTTCGATACAAAATTGGTGAGGAAAGTTTTGAGATTCCTTCTGTCTTGGTTCAACATGAAAGTTACTACTATTGAGGAAGCTAACGACACCGCCACCATGAGACTTGAGGAGTTATTCAGGTCTTTAAGAACATTTGAACTATCATTTAATGATAATGTACAAAAGTAG

Protein sequence

MAEDETITEFNVSVLDLANESFALRERLFDTKLVRKVLRFLLSWFNMKVTTIEEANDTATMRLEELFRSLRTFELSFNDNVQK*
Homology
[Close]
BLAST of MELO3C024630 vs. TrEMBL
Match: O65147_SOYBN (Gag-pol polyprotein OS=Glycine max GN=pol PE=4 SV=2)

HSP 1 Score: 86.3 bits (212), Expect = 2.0e-14
Identity = 44/83 (53.01%), Postives = 59/83 (71.08%), Query Frame = 1 

Query: 1   MAEDETITEFNVSVLDLANESFALRERLFDTKLVRKVLRFLLSWFNMKVTTIEEANDTAT 60
           M E+E I EF++++L++AN   AL ER+ D KLVRK+LR L   F+MKVT IEEA D   
Sbjct: 112 MKEEECIHEFHMNILEIANACTALGERMTDEKLVRKILRSLPKRFDMKVTAIEEAQDICN 171

Query: 61  MRLEELFRSLRTFELSFNDNVQK 84
           MR++EL  SL+TFEL  +D  +K
Sbjct: 172 MRVDELIGSLQTFELGLSDRTEK 194

[Close]
BLAST of MELO3C024630 vs. TrEMBL
Match: W9R3W7_9ROSA (Receptor-like protein 12 OS=Morus notabilis GN=L484_021844 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.6e-14
Identity = 44/80 (55.00%), Postives = 58/80 (72.50%), Query Frame = 1 

Query: 1   MAEDETITEFNVSVLDLANESFALRERLFDTKLVRKVLRFLLSWFNMKVTTIEEANDTAT 60
           M EDETI +FN  + D+ANE+FAL E++ + KLVRKVLR L   F  KVT IEEA D   
Sbjct: 137 MLEDETIYDFNSKLCDIANEAFALGEKILEEKLVRKVLRSLPRRFAYKVTAIEEAKDIQI 196

Query: 61  MRLEELFRSLRTFELSFNDN 81
           ++L+EL  SLRTFE++ ++N
Sbjct: 197 IKLDELMGSLRTFEMNLDEN 216

[Close]
BLAST of MELO3C024630 vs. TrEMBL
Match: Q84VH6_SOYBN (Gag-pol polyprotein OS=Glycine max GN=gag-pol PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 4.4e-14
Identity = 43/83 (51.81%), Postives = 59/83 (71.08%), Query Frame = 1 

Query: 1   MAEDETITEFNVSVLDLANESFALRERLFDTKLVRKVLRFLLSWFNMKVTTIEEANDTAT 60
           M E+E I +F++++L++AN   AL ER+ D KLVRK+LR L   F+MKVT IEEA D   
Sbjct: 139 MKEEECIHDFHMTILEIANACTALGERMTDEKLVRKILRSLPKRFDMKVTAIEEAQDICN 198

Query: 61  MRLEELFRSLRTFELSFNDNVQK 84
           MR++EL  SL+TFEL  +D  +K
Sbjct: 199 MRVDELIGSLQTFELGLSDRTEK 221

[Close]
BLAST of MELO3C024630 vs. TrEMBL
Match: Q84VI4_SOYBN (Gag-pol polyprotein OS=Glycine max GN=gag-pol PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 4.4e-14
Identity = 43/83 (51.81%), Postives = 59/83 (71.08%), Query Frame = 1 

Query: 1   MAEDETITEFNVSVLDLANESFALRERLFDTKLVRKVLRFLLSWFNMKVTTIEEANDTAT 60
           M E+E I +F++++L++AN   AL ER+ D KLVRK+LR L   F+MKVT IEEA D   
Sbjct: 139 MKEEECIHDFHMNILEIANACTALGERITDEKLVRKILRSLPKRFDMKVTAIEEAQDICN 198

Query: 61  MRLEELFRSLRTFELSFNDNVQK 84
           MR++EL  SL+TFEL  +D  +K
Sbjct: 199 MRVDELIGSLQTFELGLSDRAEK 221

[Close]
BLAST of MELO3C024630 vs. TrEMBL
Match: Q84VH8_SOYBN (Gag-pol polyprotein OS=Glycine max GN=gag-pol PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 4.4e-14
Identity = 43/83 (51.81%), Postives = 59/83 (71.08%), Query Frame = 1 

Query: 1   MAEDETITEFNVSVLDLANESFALRERLFDTKLVRKVLRFLLSWFNMKVTTIEEANDTAT 60
           M E+E I +F++++L++AN   AL ER+ D KLVRK+LR L   F+MKVT IEEA D   
Sbjct: 139 MKEEECIHDFHMNILEIANACTALGERITDEKLVRKILRSLPKRFDMKVTAIEEAQDICN 198

Query: 61  MRLEELFRSLRTFELSFNDNVQK 84
           MR++EL  SL+TFEL  +D  +K
Sbjct: 199 MRVDELIGSLQTFELGLSDRAEK 221

[Close]
BLAST of MELO3C024630 vs. NCBI nr
Match: gi|659072224|ref|XP_008464095.1| (PREDICTED: uncharacterized protein LOC103502061 [Cucumis melo])

HSP 1 Score: 104.0 bits (258), Expect = 1.3e-19
Identity = 56/78 (71.79%), Postives = 62/78 (79.49%), Query Frame = 1 

Query: 1   MAEDETITEFNVSVLDLANESFALRERLFDTKLVRKVLRFLLSWFNMKVTTIEEANDTAT 60
           + EDETI EFNV VLDLANESFAL E+L +TK VRKV R L   FNMKVTTIEEAND   
Sbjct: 144 LTEDETIVEFNVRVLDLANESFALSEKLTNTKQVRKVQRSLPPRFNMKVTTIEEANDILV 203

Query: 61  MRLEELFRSLRTFELSFN 79
           +RL+ELF SLRTFELS +
Sbjct: 204 IRLDELFDSLRTFELSLD 221

[Close]
BLAST of MELO3C024630 vs. NCBI nr
Match: gi|659129626|ref|XP_008464761.1| (PREDICTED: uncharacterized protein LOC103502566 [Cucumis melo])

HSP 1 Score: 98.2 bits (243), Expect = 7.2e-18
Identity = 51/79 (64.56%), Postives = 62/79 (78.48%), Query Frame = 1 

Query: 1   MAEDETITEFNVSVLDLANESFALRERLFDTKLVRKVLRFLLSWFNMKVTTIEEANDTAT 60
           M EDETI EF V VL++ANE + L E++ D+KLVRKVLR L S FN+K+TTIEEAND + 
Sbjct: 274 MEEDETIAEFIVRVLNIANELYTLGEKMSDSKLVRKVLRSLPSRFNIKITTIEEANDLSK 333

Query: 61  MRLEELFRSLRTFELSFND 80
           M+L+ELF SLRTFEL   D
Sbjct: 334 MKLDELFGSLRTFELHLGD 352

[Close]
BLAST of MELO3C024630 vs. NCBI nr
Match: gi|3777527|gb|AAC64917.1| (gag-pol polyprotein [Glycine max])

HSP 1 Score: 86.3 bits (212), Expect = 2.8e-14
Identity = 44/83 (53.01%), Postives = 59/83 (71.08%), Query Frame = 1 

Query: 1   MAEDETITEFNVSVLDLANESFALRERLFDTKLVRKVLRFLLSWFNMKVTTIEEANDTAT 60
           M E+E I EF++++L++AN   AL ER+ D KLVRK+LR L   F+MKVT IEEA D   
Sbjct: 112 MKEEECIHEFHMNILEIANACTALGERMTDEKLVRKILRSLPKRFDMKVTAIEEAQDICN 171

Query: 61  MRLEELFRSLRTFELSFNDNVQK 84
           MR++EL  SL+TFEL  +D  +K
Sbjct: 172 MRVDELIGSLQTFELGLSDRTEK 194

[Close]
BLAST of MELO3C024630 vs. NCBI nr
Match: gi|703072544|ref|XP_010089312.1| (Receptor-like protein 12 [Morus notabilis])

HSP 1 Score: 85.9 bits (211), Expect = 3.7e-14
Identity = 44/80 (55.00%), Postives = 58/80 (72.50%), Query Frame = 1 

Query: 1   MAEDETITEFNVSVLDLANESFALRERLFDTKLVRKVLRFLLSWFNMKVTTIEEANDTAT 60
           M EDETI +FN  + D+ANE+FAL E++ + KLVRKVLR L   F  KVT IEEA D   
Sbjct: 137 MLEDETIYDFNSKLCDIANEAFALGEKILEEKLVRKVLRSLPRRFAYKVTAIEEAKDIQI 196

Query: 61  MRLEELFRSLRTFELSFNDN 81
           ++L+EL  SLRTFE++ ++N
Sbjct: 197 IKLDELMGSLRTFEMNLDEN 216

[Close]
BLAST of MELO3C024630 vs. NCBI nr
Match: gi|659129653|ref|XP_008464774.1| (PREDICTED: uncharacterized protein LOC103502582 [Cucumis melo])

HSP 1 Score: 85.9 bits (211), Expect = 3.7e-14
Identity = 44/83 (53.01%), Postives = 62/83 (74.70%), Query Frame = 1 

Query: 1  MAEDETITEFNVSVLDLANESFALRERLFDTKLVRKVLRFLLSWFNMKVTTIEEANDTAT 60
          M EDE+++++N  VL++ANES  L E + D+K+VRKV+R L S F+MKVT IEEA+D  T
Sbjct: 1  MNEDESVSDYNKRVLEIANESLLLCETIPDSKIVRKVVRSLPSKFDMKVTAIEEAHDITT 60

Query: 61 MRLEELFRSLRTFELSFNDNVQK 84
          ++L+ELF SL TFE++  D   K
Sbjct: 61 LKLDELFGSLLTFEMATADRESK 83

The following BLAST results are available for this feature:
BLAST of MELO3C024630 vs. TrEMBL
Match NameE-valueIdentityDescription
O65147_SOYBN2.0e-1453.01Gag-pol polyprotein OS=Glycine max GN=pol PE=4 SV=2[more]
W9R3W7_9ROSA2.6e-1455.00Receptor-like protein 12 OS=Morus notabilis GN=L484_021844 PE=4 SV=1[more]
Q84VH6_SOYBN4.4e-1451.81Gag-pol polyprotein OS=Glycine max GN=gag-pol PE=4 SV=1[more]
Q84VI4_SOYBN4.4e-1451.81Gag-pol polyprotein OS=Glycine max GN=gag-pol PE=4 SV=1[more]
Q84VH8_SOYBN4.4e-1451.81Gag-pol polyprotein OS=Glycine max GN=gag-pol PE=4 SV=1[more]
BLAST of MELO3C024630 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659072224|ref|XP_008464095.1|1.3e-1971.79PREDICTED: uncharacterized protein LOC103502061 [Cucumis melo][more]
gi|659129626|ref|XP_008464761.1|7.2e-1864.56PREDICTED: uncharacterized protein LOC103502566 [Cucumis melo][more]
gi|3777527|gb|AAC64917.1|2.8e-1453.01gag-pol polyprotein [Glycine max][more]
gi|703072544|ref|XP_010089312.1|3.7e-1455.00Receptor-like protein 12 [Morus notabilis][more]
gi|659129653|ref|XP_008464774.1|3.7e-1453.01PREDICTED: uncharacterized protein LOC103502582 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005488 binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C024630T1MELO3C024630T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 1..77
score: 6.