MELO3C024630 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C024630
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr2 : 19299542 .. 19299793 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGAAGATGAAACGATCACAGAATTTAATGTCAGTGTTTTGGATTTGGCGAATGAATCTTTTGCTCTTAGGGAAAGGCTTTTCGATACAAAATTGGTGAGGAAAGTTTTGAGATTCCTTCTGTCTTGGTTCAACATGAAAGTTACTACTATTGAGGAAGCTAACGACACCGCCACCATGAGACTTGAGGAGTTATTCAGGTCTTTAAGAACATTTGAACTATCATTTAATGATAATGTACAAAAGTAG

mRNA sequence

ATGGCTGAAGATGAAACGATCACAGAATTTAATGTCAGTGTTTTGGATTTGGCGAATGAATCTTTTGCTCTTAGGGAAAGGCTTTTCGATACAAAATTGGTGAGGAAAGTTTTGAGATTCCTTCTGTCTTGGTTCAACATGAAAGTTACTACTATTGAGGAAGCTAACGACACCGCCACCATGAGACTTGAGGAGTTATTCAGGTCTTTAAGAACATTTGAACTATCATTTAATGATAATGTACAAAAGTAG

Coding sequence (CDS)

ATGGCTGAAGATGAAACGATCACAGAATTTAATGTCAGTGTTTTGGATTTGGCGAATGAATCTTTTGCTCTTAGGGAAAGGCTTTTCGATACAAAATTGGTGAGGAAAGTTTTGAGATTCCTTCTGTCTTGGTTCAACATGAAAGTTACTACTATTGAGGAAGCTAACGACACCGCCACCATGAGACTTGAGGAGTTATTCAGGTCTTTAAGAACATTTGAACTATCATTTAATGATAATGTACAAAAGTAG

Protein sequence

MAEDETITEFNVSVLDLANESFALRERLFDTKLVRKVLRFLLSWFNMKVTTIEEANDTATMRLEELFRSLRTFELSFNDNVQK*

Homology

[Close]

BLAST of MELO3C024630 vs. TrEMBL
Match: O65147_SOYBN (Gag-pol polyprotein OS=Glycine max GN=pol PE=4 SV=2)

HSP 1 Score: 86.3 bits (212), Expect = 2.0e-14
Identity = 44/83 (53.01%), Postives = 59/83 (71.08%), Query Frame = 1


Query: 1   MAEDETITEFNVSVLDLANESFALRERLFDTKLVRKVLRFLLSWFNMKVTTIEEANDTAT 60
           M E+E I EF++++L++AN   AL ER+ D KLVRK+LR L   F+MKVT IEEA D   
Sbjct: 112 MKEEECIHEFHMNILEIANACTALGERMTDEKLVRKILRSLPKRFDMKVTAIEEAQDICN 171

Query: 61  MRLEELFRSLRTFELSFNDNVQK 84
           MR++EL  SL+TFEL  +D  +K
Sbjct: 172 MRVDELIGSLQTFELGLSDRTEK 194

[Close]

BLAST of MELO3C024630 vs. TrEMBL
Match: W9R3W7_9ROSA (Receptor-like protein 12 OS=Morus notabilis GN=L484_021844 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.6e-14
Identity = 44/80 (55.00%), Postives = 58/80 (72.50%), Query Frame = 1


Query: 1   MAEDETITEFNVSVLDLANESFALRERLFDTKLVRKVLRFLLSWFNMKVTTIEEANDTAT 60
           M EDETI +FN  + D+ANE+FAL E++ + KLVRKVLR L   F  KVT IEEA D   
Sbjct: 137 MLEDETIYDFNSKLCDIANEAFALGEKILEEKLVRKVLRSLPRRFAYKVTAIEEAKDIQI 196

Query: 61  MRLEELFRSLRTFELSFNDN 81
           ++L+EL  SLRTFE++ ++N
Sbjct: 197 IKLDELMGSLRTFEMNLDEN 216

[Close]

BLAST of MELO3C024630 vs. TrEMBL
Match: Q84VH6_SOYBN (Gag-pol polyprotein OS=Glycine max GN=gag-pol PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 4.4e-14
Identity = 43/83 (51.81%), Postives = 59/83 (71.08%), Query Frame = 1


Query: 1   MAEDETITEFNVSVLDLANESFALRERLFDTKLVRKVLRFLLSWFNMKVTTIEEANDTAT 60
           M E+E I +F++++L++AN   AL ER+ D KLVRK+LR L   F+MKVT IEEA D   
Sbjct: 139 MKEEECIHDFHMTILEIANACTALGERMTDEKLVRKILRSLPKRFDMKVTAIEEAQDICN 198

Query: 61  MRLEELFRSLRTFELSFNDNVQK 84
           MR++EL  SL+TFEL  +D  +K
Sbjct: 199 MRVDELIGSLQTFELGLSDRTEK 221

[Close]

BLAST of MELO3C024630 vs. TrEMBL
Match: Q84VI4_SOYBN (Gag-pol polyprotein OS=Glycine max GN=gag-pol PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 4.4e-14
Identity = 43/83 (51.81%), Postives = 59/83 (71.08%), Query Frame = 1


Query: 1   MAEDETITEFNVSVLDLANESFALRERLFDTKLVRKVLRFLLSWFNMKVTTIEEANDTAT 60
           M E+E I +F++++L++AN   AL ER+ D KLVRK+LR L   F+MKVT IEEA D   
Sbjct: 139 MKEEECIHDFHMNILEIANACTALGERITDEKLVRKILRSLPKRFDMKVTAIEEAQDICN 198

Query: 61  MRLEELFRSLRTFELSFNDNVQK 84
           MR++EL  SL+TFEL  +D  +K
Sbjct: 199 MRVDELIGSLQTFELGLSDRAEK 221

[Close]

BLAST of MELO3C024630 vs. TrEMBL
Match: Q84VH8_SOYBN (Gag-pol polyprotein OS=Glycine max GN=gag-pol PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 4.4e-14
Identity = 43/83 (51.81%), Postives = 59/83 (71.08%), Query Frame = 1


Query: 1   MAEDETITEFNVSVLDLANESFALRERLFDTKLVRKVLRFLLSWFNMKVTTIEEANDTAT 60
           M E+E I +F++++L++AN   AL ER+ D KLVRK+LR L   F+MKVT IEEA D   
Sbjct: 139 MKEEECIHDFHMNILEIANACTALGERITDEKLVRKILRSLPKRFDMKVTAIEEAQDICN 198

Query: 61  MRLEELFRSLRTFELSFNDNVQK 84
           MR++EL  SL+TFEL  +D  +K
Sbjct: 199 MRVDELIGSLQTFELGLSDRAEK 221

[Close]

BLAST of MELO3C024630 vs. NCBI nr
Match: gi|659072224|ref|XP_008464095.1| (PREDICTED: uncharacterized protein LOC103502061 [Cucumis melo])

HSP 1 Score: 104.0 bits (258), Expect = 1.3e-19
Identity = 56/78 (71.79%), Postives = 62/78 (79.49%), Query Frame = 1


Query: 1   MAEDETITEFNVSVLDLANESFALRERLFDTKLVRKVLRFLLSWFNMKVTTIEEANDTAT 60
           + EDETI EFNV VLDLANESFAL E+L +TK VRKV R L   FNMKVTTIEEAND   
Sbjct: 144 LTEDETIVEFNVRVLDLANESFALSEKLTNTKQVRKVQRSLPPRFNMKVTTIEEANDILV 203

Query: 61  MRLEELFRSLRTFELSFN 79
           +RL+ELF SLRTFELS +
Sbjct: 204 IRLDELFDSLRTFELSLD 221

[Close]

BLAST of MELO3C024630 vs. NCBI nr
Match: gi|659129626|ref|XP_008464761.1| (PREDICTED: uncharacterized protein LOC103502566 [Cucumis melo])

HSP 1 Score: 98.2 bits (243), Expect = 7.2e-18
Identity = 51/79 (64.56%), Postives = 62/79 (78.48%), Query Frame = 1


Query: 1   MAEDETITEFNVSVLDLANESFALRERLFDTKLVRKVLRFLLSWFNMKVTTIEEANDTAT 60
           M EDETI EF V VL++ANE + L E++ D+KLVRKVLR L S FN+K+TTIEEAND + 
Sbjct: 274 MEEDETIAEFIVRVLNIANELYTLGEKMSDSKLVRKVLRSLPSRFNIKITTIEEANDLSK 333

Query: 61  MRLEELFRSLRTFELSFND 80
           M+L+ELF SLRTFEL   D
Sbjct: 334 MKLDELFGSLRTFELHLGD 352

[Close]

BLAST of MELO3C024630 vs. NCBI nr
Match: gi|3777527|gb|AAC64917.1| (gag-pol polyprotein [Glycine max])

HSP 1 Score: 86.3 bits (212), Expect = 2.8e-14
Identity = 44/83 (53.01%), Postives = 59/83 (71.08%), Query Frame = 1


Query: 1   MAEDETITEFNVSVLDLANESFALRERLFDTKLVRKVLRFLLSWFNMKVTTIEEANDTAT 60
           M E+E I EF++++L++AN   AL ER+ D KLVRK+LR L   F+MKVT IEEA D   
Sbjct: 112 MKEEECIHEFHMNILEIANACTALGERMTDEKLVRKILRSLPKRFDMKVTAIEEAQDICN 171

Query: 61  MRLEELFRSLRTFELSFNDNVQK 84
           MR++EL  SL+TFEL  +D  +K
Sbjct: 172 MRVDELIGSLQTFELGLSDRTEK 194

[Close]

BLAST of MELO3C024630 vs. NCBI nr
Match: gi|703072544|ref|XP_010089312.1| (Receptor-like protein 12 [Morus notabilis])

HSP 1 Score: 85.9 bits (211), Expect = 3.7e-14
Identity = 44/80 (55.00%), Postives = 58/80 (72.50%), Query Frame = 1


Query: 1   MAEDETITEFNVSVLDLANESFALRERLFDTKLVRKVLRFLLSWFNMKVTTIEEANDTAT 60
           M EDETI +FN  + D+ANE+FAL E++ + KLVRKVLR L   F  KVT IEEA D   
Sbjct: 137 MLEDETIYDFNSKLCDIANEAFALGEKILEEKLVRKVLRSLPRRFAYKVTAIEEAKDIQI 196

Query: 61  MRLEELFRSLRTFELSFNDN 81
           ++L+EL  SLRTFE++ ++N
Sbjct: 197 IKLDELMGSLRTFEMNLDEN 216

[Close]

BLAST of MELO3C024630 vs. NCBI nr
Match: gi|659129653|ref|XP_008464774.1| (PREDICTED: uncharacterized protein LOC103502582 [Cucumis melo])

HSP 1 Score: 85.9 bits (211), Expect = 3.7e-14
Identity = 44/83 (53.01%), Postives = 62/83 (74.70%), Query Frame = 1


Query: 1  MAEDETITEFNVSVLDLANESFALRERLFDTKLVRKVLRFLLSWFNMKVTTIEEANDTAT 60
          M EDE+++++N  VL++ANES  L E + D+K+VRKV+R L S F+MKVT IEEA+D  T
Sbjct: 1  MNEDESVSDYNKRVLEIANESLLLCETIPDSKIVRKVVRSLPSKFDMKVTAIEEAHDITT 60

Query: 61 MRLEELFRSLRTFELSFNDNVQK 84
          ++L+ELF SL TFE++  D   K
Sbjct: 61 LKLDELFGSLLTFEMATADRESK 83

The following BLAST results are available for this feature:

BLAST of MELO3C024630 vs. TrEMBL


Match Name	E-value	Identity	Description
O65147_SOYBN	2.0e-14	53.01	Gag-pol polyprotein OS=Glycine max GN=pol PE=4 SV=2	[more]
W9R3W7_9ROSA	2.6e-14	55.00	Receptor-like protein 12 OS=Morus notabilis GN=L484_021844 PE=4 SV=1	[more]
Q84VH6_SOYBN	4.4e-14	51.81	Gag-pol polyprotein OS=Glycine max GN=gag-pol PE=4 SV=1	[more]
Q84VI4_SOYBN	4.4e-14	51.81	Gag-pol polyprotein OS=Glycine max GN=gag-pol PE=4 SV=1	[more]
Q84VH8_SOYBN	4.4e-14	51.81	Gag-pol polyprotein OS=Glycine max GN=gag-pol PE=4 SV=1	[more]

BLAST of MELO3C024630 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659072224\|ref\|XP_008464095.1\|	1.3e-19	71.79	PREDICTED: uncharacterized protein LOC103502061 [Cucumis melo]	[more]
gi\|659129626\|ref\|XP_008464761.1\|	7.2e-18	64.56	PREDICTED: uncharacterized protein LOC103502566 [Cucumis melo]	[more]
gi\|3777527\|gb\|AAC64917.1\|	2.8e-14	53.01	gag-pol polyprotein [Glycine max]	[more]
gi\|703072544\|ref\|XP_010089312.1\|	3.7e-14	55.00	Receptor-like protein 12 [Morus notabilis]	[more]
gi\|659129653\|ref\|XP_008464774.1\|	3.7e-14	53.01	PREDICTED: uncharacterized protein LOC103502582 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005488	binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C024630T1	MELO3C024630T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 1..77 score: 6.

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C024630	Cucumber (Chinese Long) v3	cucmeB060
MELO3C024630	Cucumber (Chinese Long) v3	cucmeB116
MELO3C024630	Watermelon (97103) v2	mewmbB239
MELO3C024630	Watermelon (97103) v2	mewmbB262
MELO3C024630	Wax gourd	mewgoB273
MELO3C024630	Wax gourd	mewgoB290
MELO3C024630	Melon (DHL92) v3.5.1	memeB104
MELO3C024630	Cucurbita moschata (Rifu)	cmomeB098
MELO3C024630	Cucumber (Gy14) v1	cgymeB169
MELO3C024630	Cucurbita maxima (Rimu)	cmameB058
MELO3C024630	Cucurbita maxima (Rimu)	cmameB105
MELO3C024630	Cucurbita maxima (Rimu)	cmameB719
MELO3C024630	Cucurbita moschata (Rifu)	cmomeB049
MELO3C024630	Cucurbita moschata (Rifu)	cmomeB140
MELO3C024630	Cucurbita moschata (Rifu)	cmomeB710
MELO3C024630	Wild cucumber (PI 183967)	cpimeB110
MELO3C024630	Watermelon (Charleston Gray)	mewcgB232
MELO3C024630	Watermelon (Charleston Gray)	mewcgB255
MELO3C024630	Watermelon (97103) v1	mewmB284
MELO3C024630	Watermelon (97103) v1	mewmB290
MELO3C024630	Cucurbita pepo (Zucchini)	cpemeB334
MELO3C024630	Cucurbita pepo (Zucchini)	cpemeB621
MELO3C024630	Cucurbita pepo (Zucchini)	cpemeB751
MELO3C024630	Bottle gourd (USVL1VR-Ls)	lsimeB102
MELO3C024630	Bottle gourd (USVL1VR-Ls)	lsimeB403
MELO3C024630	Cucumber (Gy14) v2	cgybmeB056
MELO3C024630	Silver-seed gourd	carmeB0035
MELO3C024630	Silver-seed gourd	carmeB0131
MELO3C024630	Silver-seed gourd	carmeB0572