MELO3C024621 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C024621
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	MICOS complex subunit MIC60
Location	chr8 : 7407365 .. 7408021 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGTTAGACGAGCTTTCAAGAACCTCCCTTTGACAGCCTGGAATATGAGTACCTACAAACAGATCGGGGATGCATGTGGTGGGTTAGTAGAAGTATCAAAATCAACAATGAGGAAGACATACCTTATTGAAGTTAGATTGAAGATCAGACACAACTATACAAGGCTCATTCTAGCTCAAATCAACATCACGGACAATAAAAATAACATTTTTACGGTCCAAACCATTTCTTACACAGAAGGAAGATGGTTCAAAGAAAGAAATGCAAACATTCATGGTTCTTTTACAAGACAAGCTGCCCTAAAATTCAATGAATTTGATTTTGAGGCTAAACAATACTCCTTCATGAGATTTACTGCCACACCGCCGAAGAAAGAAGAAAAAAAGCCAAAGAAAACTCAAAAGAACAGCCGGAACAGTAACGAACGACCGTCCATTTCAAACTCACTGGACTCAACTTCCAAAGCCATCATAATCTCTGACAACTCTGATGGAGGTAGGGGTAGTGATGAAAGGCTCAAATCTGTCATTTCGGGTAAGATGGACAAATGGAAGGGATTTATGGTCCTTAATGAAAACCAAGAAGAAAAGGCCAAATTTCCAAAGAGGAAAGTCAACTTCCCCTCTCCAAAAAGACAAAACATTCTTCTATAA

mRNA sequence

ATGGAGGTTAGACGAGCTTTCAAGAACCTCCCTTTGACAGCCTGGAATATGAGTACCTACAAACAGATCGGGGATGCATGTGGTGGGTTAGTAGAAGTATCAAAATCAACAATGAGGAAGACATACCTTATTGAAGTTAGATTGAAGATCAGACACAACTATACAAGGCTCATTCTAGCTCAAATCAACATCACGGACAATAAAAATAACATTTTTACGGTCCAAACCATTTCTTACACAGAAGGAAGATGGTTCAAAGAAAGAAATGCAAACATTCATGGTTCTTTTACAAGACAAGCTGCCCTAAAATTCAATGAATTTGATTTTGAGGCTAAACAATACTCCTTCATGAGATTTACTGCCACACCGCCGAAGAAAGAAGAAAAAAAGCCAAAGAAAACTCAAAAGAACAGCCGGAACAGTAACGAACGACCGTCCATTTCAAACTCACTGGACTCAACTTCCAAAGCCATCATAATCTCTGACAACTCTGATGGAGGTAGGGGTAGTGATGAAAGGCTCAAATCTGTCATTTCGGGTAAGATGGACAAATGGAAGGGATTTATGGTCCTTAATGAAAACCAAGAAGAAAAGGCCAAATTTCCAAAGAGGAAAGTCAACTTCCCCTCTCCAAAAAGACAAAACATTCTTCTATAA

Coding sequence (CDS)

ATGGAGGTTAGACGAGCTTTCAAGAACCTCCCTTTGACAGCCTGGAATATGAGTACCTACAAACAGATCGGGGATGCATGTGGTGGGTTAGTAGAAGTATCAAAATCAACAATGAGGAAGACATACCTTATTGAAGTTAGATTGAAGATCAGACACAACTATACAAGGCTCATTCTAGCTCAAATCAACATCACGGACAATAAAAATAACATTTTTACGGTCCAAACCATTTCTTACACAGAAGGAAGATGGTTCAAAGAAAGAAATGCAAACATTCATGGTTCTTTTACAAGACAAGCTGCCCTAAAATTCAATGAATTTGATTTTGAGGCTAAACAATACTCCTTCATGAGATTTACTGCCACACCGCCGAAGAAAGAAGAAAAAAAGCCAAAGAAAACTCAAAAGAACAGCCGGAACAGTAACGAACGACCGTCCATTTCAAACTCACTGGACTCAACTTCCAAAGCCATCATAATCTCTGACAACTCTGATGGAGGTAGGGGTAGTGATGAAAGGCTCAAATCTGTCATTTCGGGTAAGATGGACAAATGGAAGGGATTTATGGTCCTTAATGAAAACCAAGAAGAAAAGGCCAAATTTCCAAAGAGGAAAGTCAACTTCCCCTCTCCAAAAAGACAAAACATTCTTCTATAA

Protein sequence

MEVRRAFKNLPLTAWNMSTYKQIGDACGGLVEVSKSTMRKTYLIEVRLKIRHNYTRLILAQINITDNKNNIFTVQTISYTEGRWFKERNANIHGSFTRQAALKFNEFDFEAKQYSFMRFTATPPKKEEKKPKKTQKNSRNSNERPSISNSLDSTSKAIIISDNSDGGRGSDERLKSVISGKMDKWKGFMVLNENQEEKAKFPKRKVNFPSPKRQNILL*

Homology

[Close]

BLAST of MELO3C024621 vs. TrEMBL
Match: E5GB30_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.1e-24
Identity = 79/218 (36.24%), Postives = 117/218 (53.67%), Query Frame = 1


Query: 10  LPLTAWNMSTYKQIGDACGGLVEVSKSTMRKTYLIEVRLKIRHNYTRLILAQINITDNKN 69
           +PL AWN+ ++ QIGDACGG +EV+K T   T LIE  ++++ NY+  I A I + D + 
Sbjct: 223 VPLHAWNLESFVQIGDACGGFMEVAKETRELTDLIEASIRVKDNYSGFIPAFIKLIDKEE 282

Query: 70  NIFTVQTISYTEGRWFKERNANIHGSFTRQAALKFNEFDFEAKQYSFMRFTATPPKKEEK 129
             + +Q I  TEG+W   RN +IHG+FTR+AA +F+EF+  ++QY F    A  P+K   
Sbjct: 283 RSYIIQVIVKTEGKWHLGRNPSIHGTFTREAARRFDEFNLNSEQYFFEGNLAISPEKAVS 342

Query: 130 KPKKTQKNSRNSNERPSISNSLDSTSKAIIISDNSDGGRGSDERLK--------SVISGK 189
                +   +  N  P + N  +    A++   N DG   S E+ K        SVIS K
Sbjct: 343 MVIGKEDWKKKGN-GPLLEN--NKKLGAMMDFLNYDGDSDSSEKRKMEIVDEELSVISQK 402

Query: 190 MDK--WKGFMVLNENQEEKAKFPKRKVNFPSPKRQNIL 218
             K  +KG      ++    K  KRKV+F +PK +  L
Sbjct: 403 GGKLFYKG----ENSKSAGQKRGKRKVSFDTPKSKTFL 433

[Close]

BLAST of MELO3C024621 vs. TrEMBL
Match: A0A0A0KFP0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G367105 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 8.5e-09
Identity = 29/77 (37.66%), Postives = 49/77 (63.64%), Query Frame = 1


Query: 7   FKNLPLTAWNMSTYKQIGDACGGLVEVSKSTMRKTYLIEVRLKIRHNYTRLILAQINITD 66
           F+ + + AW+M T+ QIG+ACG  +E+++   ++  + +  LK++ N+T  I A IN+ D
Sbjct: 74  FRGILMHAWDMETFTQIGEACGSFIEITREIKKQVEIRQAMLKVKENFTGFIPAFINVFD 133

Query: 67  NKNNIFTVQTISYTEGR 84
            K N F VQ+I   EG+
Sbjct: 134 KKGNSFLVQSIVQAEGK 150

[Close]

BLAST of MELO3C024621 vs. TrEMBL
Match: A0A0A0LH82_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G055060 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.1e-08
Identity = 32/79 (40.51%), Postives = 44/79 (55.70%), Query Frame = 1


Query: 55  TRLILAQINITDNKNNIFTVQTISYTEGRWFKERNANIHGSFTRQAALKFNEFDFEAKQY 114
           +R + A I ITD+  N F +Q +S+T+G+W  ERN   HG F  QA   F EF+  AKQ+
Sbjct: 6   SRFVPAYIRITDDLGNSFPIQIVSHTQGKWLVERNVRKHGIFKSQATTSFGEFNPNAKQF 65

Query: 115 SFMRFTATPPKKEEKKPKK 134
           +F+     PPK       K
Sbjct: 66  TFIGSEGLPPKHPTSSKNK 84

[Close]

BLAST of MELO3C024621 vs. NCBI nr
Match: gi|307135793|gb|ADN33672.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 121.7 bits (304), Expect = 1.6e-24
Identity = 79/218 (36.24%), Postives = 117/218 (53.67%), Query Frame = 1


Query: 10  LPLTAWNMSTYKQIGDACGGLVEVSKSTMRKTYLIEVRLKIRHNYTRLILAQINITDNKN 69
           +PL AWN+ ++ QIGDACGG +EV+K T   T LIE  ++++ NY+  I A I + D + 
Sbjct: 223 VPLHAWNLESFVQIGDACGGFMEVAKETRELTDLIEASIRVKDNYSGFIPAFIKLIDKEE 282

Query: 70  NIFTVQTISYTEGRWFKERNANIHGSFTRQAALKFNEFDFEAKQYSFMRFTATPPKKEEK 129
             + +Q I  TEG+W   RN +IHG+FTR+AA +F+EF+  ++QY F    A  P+K   
Sbjct: 283 RSYIIQVIVKTEGKWHLGRNPSIHGTFTREAARRFDEFNLNSEQYFFEGNLAISPEKAVS 342

Query: 130 KPKKTQKNSRNSNERPSISNSLDSTSKAIIISDNSDGGRGSDERLK--------SVISGK 189
                +   +  N  P + N  +    A++   N DG   S E+ K        SVIS K
Sbjct: 343 MVIGKEDWKKKGN-GPLLEN--NKKLGAMMDFLNYDGDSDSSEKRKMEIVDEELSVISQK 402

Query: 190 MDK--WKGFMVLNENQEEKAKFPKRKVNFPSPKRQNIL 218
             K  +KG      ++    K  KRKV+F +PK +  L
Sbjct: 403 GGKLFYKG----ENSKSAGQKRGKRKVSFDTPKSKTFL 433

[Close]

BLAST of MELO3C024621 vs. NCBI nr
Match: gi|659071590|ref|XP_008460776.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103499536 [Cucumis melo])

HSP 1 Score: 121.3 bits (303), Expect = 2.1e-24
Identity = 53/118 (44.92%), Postives = 81/118 (68.64%), Query Frame = 1


Query: 7   FKNLPLTAWNMSTYKQIGDACGGLVEVSKSTMRKTYLIEVRLKIRHNYTRLILAQINITD 66
           F+ +PL  WNM T++QIG ACGGL++V++ T     LIE ++KIR+NY+  + A + I D
Sbjct: 293 FRGIPLHLWNMKTFQQIGKACGGLIKVAEETRSAKNLIEAKIKIRYNYSGFLPANVRIFD 352

Query: 67  NKNNIFTVQTISYTEGRWFKERNANIHGSFTRQAALKFNEFDFEAKQYSFMRFTATPP 125
           N+ N F++Q +++ EG+W  ERN  +HG+F RQAA  F+EF+ E++Q+ F    A  P
Sbjct: 353 NEGNKFSIQVVTHPEGKWLIERNVRLHGTFKRQAAAAFDEFNPESEQFFFEGMEAISP 410

[Close]

BLAST of MELO3C024621 vs. NCBI nr
Match: gi|700192460|gb|KGN47664.1| (hypothetical protein Csa_6G367105 [Cucumis sativus])

HSP 1 Score: 68.9 bits (167), Expect = 1.2e-08
Identity = 29/77 (37.66%), Postives = 49/77 (63.64%), Query Frame = 1


Query: 7   FKNLPLTAWNMSTYKQIGDACGGLVEVSKSTMRKTYLIEVRLKIRHNYTRLILAQINITD 66
           F+ + + AW+M T+ QIG+ACG  +E+++   ++  + +  LK++ N+T  I A IN+ D
Sbjct: 74  FRGILMHAWDMETFTQIGEACGSFIEITREIKKQVEIRQAMLKVKENFTGFIPAFINVFD 133

Query: 67  NKNNIFTVQTISYTEGR 84
            K N F VQ+I   EG+
Sbjct: 134 KKGNSFLVQSIVQAEGK 150

[Close]

BLAST of MELO3C024621 vs. NCBI nr
Match: gi|700205999|gb|KGN61118.1| (hypothetical protein Csa_2G055060 [Cucumis sativus])

HSP 1 Score: 68.6 bits (166), Expect = 1.6e-08
Identity = 32/79 (40.51%), Postives = 44/79 (55.70%), Query Frame = 1


Query: 55  TRLILAQINITDNKNNIFTVQTISYTEGRWFKERNANIHGSFTRQAALKFNEFDFEAKQY 114
           +R + A I ITD+  N F +Q +S+T+G+W  ERN   HG F  QA   F EF+  AKQ+
Sbjct: 6   SRFVPAYIRITDDLGNSFPIQIVSHTQGKWLVERNVRKHGIFKSQATTSFGEFNPNAKQF 65

Query: 115 SFMRFTATPPKKEEKKPKK 134
           +F+     PPK       K
Sbjct: 66  TFIGSEGLPPKHPTSSKNK 84

The following BLAST results are available for this feature:

BLAST of MELO3C024621 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GB30_CUCME	1.1e-24	36.24	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A0A0KFP0_CUCSA	8.5e-09	37.66	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G367105 PE=4 SV=1	[more]
A0A0A0LH82_CUCSA	1.1e-08	40.51	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G055060 PE=4 SV=1	[more]

BLAST of MELO3C024621 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|307135793\|gb\|ADN33672.1\|	1.6e-24	36.24	hypothetical protein [Cucumis melo subsp. melo]	[more]
gi\|659071590\|ref\|XP_008460776.1\|	2.1e-24	44.92	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103499536 [Cucumis me...	[more]
gi\|700192460\|gb\|KGN47664.1\|	1.2e-08	37.66	hypothetical protein Csa_6G367105 [Cucumis sativus]	[more]
gi\|700205999\|gb\|KGN61118.1\|	1.6e-08	40.51	hypothetical protein Csa_2G055060 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C024621T1	MELO3C024621T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C024621	Cucumber (Chinese Long) v3	cucmeB521
MELO3C024621	Watermelon (97103) v2	mewmbB516
MELO3C024621	Wax gourd	mewgoB654
MELO3C024621	Cucumber (Gy14) v1	cgymeB132
MELO3C024621	Cucurbita maxima (Rimu)	cmameB609
MELO3C024621	Cucurbita maxima (Rimu)	cmameB799
MELO3C024621	Cucurbita moschata (Rifu)	cmomeB598
MELO3C024621	Cucurbita moschata (Rifu)	cmomeB783
MELO3C024621	Wild cucumber (PI 183967)	cpimeB513
MELO3C024621	Cucumber (Chinese Long) v2	cumeB504
MELO3C024621	Cucumber (Chinese Long) v2	cumeB508
MELO3C024621	Watermelon (Charleston Gray)	mewcgB516
MELO3C024621	Watermelon (97103) v1	mewmB571
MELO3C024621	Cucurbita pepo (Zucchini)	cpemeB069
MELO3C024621	Cucurbita pepo (Zucchini)	cpemeB458
MELO3C024621	Bottle gourd (USVL1VR-Ls)	lsimeB150
MELO3C024621	Cucumber (Gy14) v2	cgybmeB446
MELO3C024621	Silver-seed gourd	carmeB0242