MELO3C024609 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C024609
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Acyl-CoA binding protein, putative
Location	chr8 : 7725900 .. 7726127 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGTGATGGTGAGGGCGAGCTCCGGCTTGCAATATCCCGATCGGTTCTACGCCGCGGCTTCTTATGCCGGTTTTGATGGATCACCGAAATTGTCTTCAAAGGCCCTCAGGTCTAAGTTCTCTGATGAGGCCGCTTTGTTACTCTATGGCTTGTATCAGCAGGTACTACCACGTGTTCTTACACCTGTGACTTACCGGTGCTGTTTCAGTTTGGTTGAGGTTTGA

mRNA sequence

ATGGCTGTGATGGTGAGGGCGAGCTCCGGCTTGCAATATCCCGATCGGTTCTACGCCGCGGCTTCTTATGCCGGTTTTGATGGATCACCGAAATTGTCTTCAAAGGCCCTCAGGTCTAAGTTCTCTGATGAGGCCGCTTTGTTACTCTATGGCTTGTATCAGCAGGTACTACCACGTGTTCTTACACCTGTGACTTACCGGTGCTGTTTCAGTTTGGTTGAGGTTTGA

Coding sequence (CDS)

ATGGCTGTGATGGTGAGGGCGAGCTCCGGCTTGCAATATCCCGATCGGTTCTACGCCGCGGCTTCTTATGCCGGTTTTGATGGATCACCGAAATTGTCTTCAAAGGCCCTCAGGTCTAAGTTCTCTGATGAGGCCGCTTTGTTACTCTATGGCTTGTATCAGCAGGTACTACCACGTGTTCTTACACCTGTGACTTACCGGTGCTGTTTCAGTTTGGTTGAGGTTTGA

Protein sequence

MAVMVRASSGLQYPDRFYAAASYAGFDGSPKLSSKALRSKFSDEAALLLYGLYQQVLPRVLTPVTYRCCFSLVEV*

Homology

[Close]

BLAST of MELO3C024609 vs. Swiss-Prot
Match: ACBP5_ARATH (Acyl-CoA-binding domain-containing protein 5 OS=Arabidopsis thaliana GN=ACBP5 PE=1 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 5.3e-12
Identity = 38/55 (69.09%), Postives = 42/55 (76.36%), Query Frame = 1


Query: 1  MAVMVRASSGLQYPDRFYAAASYAGFDGSPKLSSKALRSKFSDEAALLLYGLYQQ 56
          MA MVRASSGL YP+RFYAAASY G DGS + S K L SKFS++ +LLLY L+QQ
Sbjct: 1  MAHMVRASSGLSYPERFYAAASYVGLDGS-QSSVKQLSSKFSNDTSLLLYTLHQQ 54

[Close]

BLAST of MELO3C024609 vs. Swiss-Prot
Match: ACBP4_ARATH (Acyl-CoA-binding domain-containing protein 4 OS=Arabidopsis thaliana GN=ACBP4 PE=1 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 3.8e-10
Identity = 34/52 (65.38%), Postives = 37/52 (71.15%), Query Frame = 1


Query: 4  MVRASSGLQYPDRFYAAASYAGFDGSPKLSSKALRSKFSDEAALLLYGLYQQ 56
          M RA+SG  YP+RFYAAASY G DGS   S+K + SKF D+ ALLLY LYQQ
Sbjct: 3  MPRATSGPAYPERFYAAASYVGLDGSDS-SAKNVISKFPDDTALLLYALYQQ 53

[Close]

BLAST of MELO3C024609 vs. TrEMBL
Match: A0A0A0LFW3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G030060 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 6.3e-20
Identity = 52/55 (94.55%), Postives = 52/55 (94.55%), Query Frame = 1


Query: 1  MAVMVRASSGLQYPDRFYAAASYAGFDGSPKLSSKALRSKFSDEAALLLYGLYQQ 56
          MA M RASSGLQYPDRFYAAASYAGFDGSPK SSKALRSKFSDEAALLLYGLYQQ
Sbjct: 1  MAAMARASSGLQYPDRFYAAASYAGFDGSPKSSSKALRSKFSDEAALLLYGLYQQ 55

[Close]

BLAST of MELO3C024609 vs. TrEMBL
Match: M5WQY4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002406mg PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.1e-15
Identity = 42/52 (80.77%), Postives = 48/52 (92.31%), Query Frame = 1


Query: 4  MVRASSGLQYPDRFYAAASYAGFDGSPKLSSKALRSKFSDEAALLLYGLYQQ 56
          M RASSGLQYP+RFYAAASYAGFDGSP+ SSKA+RSKF+ E+AL+LY LYQQ
Sbjct: 3  MARASSGLQYPERFYAAASYAGFDGSPRSSSKAVRSKFNSESALILYALYQQ 54

[Close]

BLAST of MELO3C024609 vs. TrEMBL
Match: D7U9T2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0060g02410 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 5.2e-14
Identity = 41/52 (78.85%), Postives = 44/52 (84.62%), Query Frame = 1


Query: 4  MVRASSGLQYPDRFYAAASYAGFDGSPKLSSKALRSKFSDEAALLLYGLYQQ 56
          M RASSGL YPDRFYAAASYAGFDGSP  SSK + SKFS++ ALLLY LYQQ
Sbjct: 5  MARASSGLAYPDRFYAAASYAGFDGSPNSSSKGVSSKFSNDVALLLYALYQQ 56

[Close]

BLAST of MELO3C024609 vs. TrEMBL
Match: V4T0M2_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v100005042mg PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.5e-13
Identity = 40/52 (76.92%), Postives = 45/52 (86.54%), Query Frame = 1


Query: 4  MVRASSGLQYPDRFYAAASYAGFDGSPKLSSKALRSKFSDEAALLLYGLYQQ 56
          M RASSGL YP+RFYAAASYAGFDGSP  S+K L SKFS+++ALLLY LYQQ
Sbjct: 3  MARASSGLAYPERFYAAASYAGFDGSPNSSAKELTSKFSNDSALLLYALYQQ 54

[Close]

BLAST of MELO3C024609 vs. TrEMBL
Match: A0A067EMH1_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0066451mg PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.5e-13
Identity = 40/52 (76.92%), Postives = 45/52 (86.54%), Query Frame = 1


Query: 4  MVRASSGLQYPDRFYAAASYAGFDGSPKLSSKALRSKFSDEAALLLYGLYQQ 56
          M RASSGL YP+RFYAAASYAGFDGSP  S+K L SKFS+++ALLLY LYQQ
Sbjct: 3  MARASSGLAYPERFYAAASYAGFDGSPNSSAKELTSKFSNDSALLLYALYQQ 54

[Close]

BLAST of MELO3C024609 vs. TAIR10
Match: AT5G27630.1 (AT5G27630.1 acyl-CoA binding protein 5)

HSP 1 Score: 71.2 bits (173), Expect = 3.0e-13
Identity = 38/55 (69.09%), Postives = 42/55 (76.36%), Query Frame = 1


Query: 1  MAVMVRASSGLQYPDRFYAAASYAGFDGSPKLSSKALRSKFSDEAALLLYGLYQQ 56
          MA MVRASSGL YP+RFYAAASY G DGS + S K L SKFS++ +LLLY L+QQ
Sbjct: 1  MAHMVRASSGLSYPERFYAAASYVGLDGS-QSSVKQLSSKFSNDTSLLLYTLHQQ 54

[Close]

BLAST of MELO3C024609 vs. TAIR10
Match: AT3G05420.2 (AT3G05420.2 acyl-CoA binding protein 4)

HSP 1 Score: 65.1 bits (157), Expect = 2.2e-11
Identity = 34/52 (65.38%), Postives = 37/52 (71.15%), Query Frame = 1


Query: 4  MVRASSGLQYPDRFYAAASYAGFDGSPKLSSKALRSKFSDEAALLLYGLYQQ 56
          M RA+SG  YP+RFYAAASY G DGS   S+K + SKF D+ ALLLY LYQQ
Sbjct: 3  MPRATSGPAYPERFYAAASYVGLDGSDS-SAKNVISKFPDDTALLLYALYQQ 53

[Close]

BLAST of MELO3C024609 vs. NCBI nr
Match: gi|659125410|ref|XP_008462673.1| (PREDICTED: acyl-CoA-binding domain-containing protein 5-like [Cucumis melo])

HSP 1 Score: 109.8 bits (273), Expect = 2.2e-21
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 1


Query: 1  MAVMVRASSGLQYPDRFYAAASYAGFDGSPKLSSKALRSKFSDEAALLLYGLYQQ 56
          MAVMVRASSGLQYPDRFYAAASYAGFDGSPKLSSKALRSKFSDEAALLLYGLYQQ
Sbjct: 1  MAVMVRASSGLQYPDRFYAAASYAGFDGSPKLSSKALRSKFSDEAALLLYGLYQQ 55

[Close]

BLAST of MELO3C024609 vs. NCBI nr
Match: gi|449454077|ref|XP_004144782.1| (PREDICTED: acyl-CoA-binding domain-containing protein 4 isoform X1 [Cucumis sativus])

HSP 1 Score: 104.4 bits (259), Expect = 9.1e-20
Identity = 52/55 (94.55%), Postives = 52/55 (94.55%), Query Frame = 1


Query: 1  MAVMVRASSGLQYPDRFYAAASYAGFDGSPKLSSKALRSKFSDEAALLLYGLYQQ 56
          MA M RASSGLQYPDRFYAAASYAGFDGSPK SSKALRSKFSDEAALLLYGLYQQ
Sbjct: 1  MAAMARASSGLQYPDRFYAAASYAGFDGSPKSSSKALRSKFSDEAALLLYGLYQQ 55

[Close]

BLAST of MELO3C024609 vs. NCBI nr
Match: gi|778666903|ref|XP_011648837.1| (PREDICTED: acyl-CoA-binding domain-containing protein 4 isoform X2 [Cucumis sativus])

HSP 1 Score: 104.4 bits (259), Expect = 9.1e-20
Identity = 52/55 (94.55%), Postives = 52/55 (94.55%), Query Frame = 1


Query: 1  MAVMVRASSGLQYPDRFYAAASYAGFDGSPKLSSKALRSKFSDEAALLLYGLYQQ 56
          MA M RASSGLQYPDRFYAAASYAGFDGSPK SSKALRSKFSDEAALLLYGLYQQ
Sbjct: 1  MAAMARASSGLQYPDRFYAAASYAGFDGSPKSSSKALRSKFSDEAALLLYGLYQQ 55

[Close]

BLAST of MELO3C024609 vs. NCBI nr
Match: gi|659070284|ref|XP_008454338.1| (PREDICTED: acyl-CoA-binding domain-containing protein 4-like isoform X1 [Cucumis melo])

HSP 1 Score: 104.4 bits (259), Expect = 9.1e-20
Identity = 52/55 (94.55%), Postives = 52/55 (94.55%), Query Frame = 1


Query: 1  MAVMVRASSGLQYPDRFYAAASYAGFDGSPKLSSKALRSKFSDEAALLLYGLYQQ 56
          MA M RASSGLQYPDRFYAAASYAGFDGSPK SSKALRSKFSDEAALLLYGLYQQ
Sbjct: 1  MAAMARASSGLQYPDRFYAAASYAGFDGSPKSSSKALRSKFSDEAALLLYGLYQQ 55

[Close]

BLAST of MELO3C024609 vs. NCBI nr
Match: gi|659070286|ref|XP_008454347.1| (PREDICTED: acyl-CoA-binding domain-containing protein 4-like isoform X2 [Cucumis melo])

HSP 1 Score: 104.4 bits (259), Expect = 9.1e-20
Identity = 52/55 (94.55%), Postives = 52/55 (94.55%), Query Frame = 1


Query: 1  MAVMVRASSGLQYPDRFYAAASYAGFDGSPKLSSKALRSKFSDEAALLLYGLYQQ 56
          MA M RASSGLQYPDRFYAAASYAGFDGSPK SSKALRSKFSDEAALLLYGLYQQ
Sbjct: 1  MAAMARASSGLQYPDRFYAAASYAGFDGSPKSSSKALRSKFSDEAALLLYGLYQQ 55

The following BLAST results are available for this feature:

BLAST of MELO3C024609 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ACBP5_ARATH	5.3e-12	69.09	Acyl-CoA-binding domain-containing protein 5 OS=Arabidopsis thaliana GN=ACBP5 PE...	[more]
ACBP4_ARATH	3.8e-10	65.38	Acyl-CoA-binding domain-containing protein 4 OS=Arabidopsis thaliana GN=ACBP4 PE...	[more]

BLAST of MELO3C024609 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LFW3_CUCSA	6.3e-20	94.55	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G030060 PE=4 SV=1	[more]
M5WQY4_PRUPE	2.1e-15	80.77	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002406mg PE=4 SV=1	[more]
D7U9T2_VITVI	5.2e-14	78.85	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0060g02410 PE=4 SV=...	[more]
V4T0M2_9ROSI	1.5e-13	76.92	Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v100005042mg PE...	[more]
A0A067EMH1_CITSI	1.5e-13	76.92	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0066451mg PE=4 ...	[more]

BLAST of MELO3C024609 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G27630.1	3.0e-13	69.09	acyl-CoA binding protein 5	[more]
AT3G05420.2	2.2e-11	65.38	acyl-CoA binding protein 4	[more]

BLAST of MELO3C024609 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659125410\|ref\|XP_008462673.1\|	2.2e-21	100.00	PREDICTED: acyl-CoA-binding domain-containing protein 5-like [Cucumis melo]	[more]
gi\|449454077\|ref\|XP_004144782.1\|	9.1e-20	94.55	PREDICTED: acyl-CoA-binding domain-containing protein 4 isoform X1 [Cucumis sati...	[more]
gi\|778666903\|ref\|XP_011648837.1\|	9.1e-20	94.55	PREDICTED: acyl-CoA-binding domain-containing protein 4 isoform X2 [Cucumis sati...	[more]
gi\|659070284\|ref\|XP_008454338.1\|	9.1e-20	94.55	PREDICTED: acyl-CoA-binding domain-containing protein 4-like isoform X1 [Cucumis...	[more]
gi\|659070286\|ref\|XP_008454347.1\|	9.1e-20	94.55	PREDICTED: acyl-CoA-binding domain-containing protein 4-like isoform X2 [Cucumis...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0000062	fatty-acyl-CoA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C024609T1	MELO3C024609T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C024609	Cucumber (Gy14) v2	cgybmeB446
MELO3C024609	Silver-seed gourd	carmeB0242
MELO3C024609	Cucumber (Chinese Long) v3	cucmeB521
MELO3C024609	Watermelon (97103) v2	mewmbB516
MELO3C024609	Wax gourd	mewgoB654
MELO3C024609	Cucurbita maxima (Rimu)	cmameB609
MELO3C024609	Cucurbita maxima (Rimu)	cmameB799
MELO3C024609	Cucurbita moschata (Rifu)	cmomeB598
MELO3C024609	Cucurbita moschata (Rifu)	cmomeB783
MELO3C024609	Wild cucumber (PI 183967)	cpimeB509
MELO3C024609	Wild cucumber (PI 183967)	cpimeB513
MELO3C024609	Cucumber (Chinese Long) v2	cumeB504
MELO3C024609	Cucumber (Chinese Long) v2	cumeB508
MELO3C024609	Watermelon (Charleston Gray)	mewcgB516
MELO3C024609	Watermelon (97103) v1	mewmB571
MELO3C024609	Cucurbita pepo (Zucchini)	cpemeB069
MELO3C024609	Cucurbita pepo (Zucchini)	cpemeB458
MELO3C024609	Bottle gourd (USVL1VR-Ls)	lsimeB150