MELO3C024487 (gene) Melon (DHL92) v3.5.1

NameMELO3C024487
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionExpansin
Locationchr8 : 8917954 .. 8918187 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAACGGGCACCAACCACTGTCCGCCCAATTACAACCTCCCTAGAGACAATGGTGGATGGTGCAATCCCCCACTCGAGCATTTCGACATTGCGAAGCCTGTTTTCCTCAACATTGCTGAGTTCAAGGCTGGCATTGTCCCTGTCACTTACCGCAGGTATCTTATACTATGTTTTAAAATTTTAATCATTAACATAATTATAATCGATGGTAATTTTAAAAATAGTAATTAA

mRNA sequence

ATGGTAACGGGCACCAACCACTGTCCGCCCAATTACAACCTCCCTAGAGACAATGGTGGATGGTGCAATCCCCCACTCGAGCATTTCGACATTGCGAAGCCTGTTTTCCTCAACATTGCTGAGTTCAAGGCTGGCATTGTCCCTGTCACTTACCGCAGTAATTAA

Coding sequence (CDS)

ATGGTAACGGGCACCAACCACTGTCCGCCCAATTACAACCTCCCTAGAGACAATGGTGGATGGTGCAATCCCCCACTCGAGCATTTCGACATTGCGAAGCCTGTTTTCCTCAACATTGCTGAGTTCAAGGCTGGCATTGTCCCTGTCACTTACCGCAGTAATTAA

Protein sequence

MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYRSN*
BLAST of MELO3C024487 vs. Swiss-Prot
Match: EXPA7_ORYSJ (Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.2e-18
Identity = 37/52 (71.15%), Postives = 43/52 (82.69%), Query Frame = 1

Query: 1   MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYR 53
           ++T TN CPPNY LP DNGGWCNPP  HFD+A P+FL+IAE++AGIVPV+YR
Sbjct: 110 LITATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLHIAEYRAGIVPVSYR 161

BLAST of MELO3C024487 vs. Swiss-Prot
Match: EXPA9_ARATH (Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 4.7e-18
Identity = 36/52 (69.23%), Postives = 43/52 (82.69%), Query Frame = 1

Query: 1   MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYR 53
           ++T TN CPPN+N   DNGGWCNPP EHFD+A P+FL+IA++KAGIVPV+YR
Sbjct: 104 LITATNFCPPNFNQASDNGGWCNPPREHFDLAMPMFLSIAKYKAGIVPVSYR 155

BLAST of MELO3C024487 vs. Swiss-Prot
Match: EXPA4_ARATH (Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.4e-17
Identity = 36/52 (69.23%), Postives = 41/52 (78.85%), Query Frame = 1

Query: 1   MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYR 53
           ++T TN CPPN   P DNGGWCNPP EHFD+A PVFL IA+++AGIVPV+YR
Sbjct: 103 LITATNFCPPNLAQPSDNGGWCNPPREHFDLAMPVFLKIAQYRAGIVPVSYR 154

BLAST of MELO3C024487 vs. Swiss-Prot
Match: EXPA4_ORYSJ (Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 2.3e-17
Identity = 35/51 (68.63%), Postives = 42/51 (82.35%), Query Frame = 1

Query: 2   VTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYR 53
           VT TN CPPNY LP D+GGWCNPP  HFD+A+P FL+IA+++AGIVPV++R
Sbjct: 95  VTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLHIAQYRAGIVPVSFR 145

BLAST of MELO3C024487 vs. Swiss-Prot
Match: EXPA4_ORYSI (Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 2.3e-17
Identity = 35/51 (68.63%), Postives = 42/51 (82.35%), Query Frame = 1

Query: 2   VTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYR 53
           VT TN CPPNY LP D+GGWCNPP  HFD+A+P FL+IA+++AGIVPV++R
Sbjct: 95  VTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLHIAQYRAGIVPVSFR 145

BLAST of MELO3C024487 vs. TrEMBL
Match: A0A0A0KIG7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G448160 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 4.4e-23
Identity = 48/52 (92.31%), Postives = 51/52 (98.08%), Query Frame = 1

Query: 1   MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYR 53
           +VTGTNHCPPN+NLP DNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVP+TYR
Sbjct: 126 VVTGTNHCPPNHNLPNDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPITYR 177

BLAST of MELO3C024487 vs. TrEMBL
Match: M5XS81_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019560mg PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 7.3e-18
Identity = 40/51 (78.43%), Postives = 45/51 (88.24%), Query Frame = 1

Query: 2   VTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYR 53
           VT TN+CPPN+N   DNGGWCNPP EHFDIAKPVFLNIAE+KAGI+P+ YR
Sbjct: 109 VTATNNCPPNWNQASDNGGWCNPPREHFDIAKPVFLNIAEYKAGIIPIEYR 159

BLAST of MELO3C024487 vs. TrEMBL
Match: M5W2X0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009524mg PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.2e-17
Identity = 43/52 (82.69%), Postives = 45/52 (86.54%), Query Frame = 1

Query: 2   VTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNI-AEFKAGIVPVTYR 53
           VT TNHCPPN+N P DNGGWCNPP EHFDIAKPVFLNI A+ KAGIVPV YR
Sbjct: 135 VTATNHCPPNWNQPSDNGGWCNPPREHFDIAKPVFLNIVAQHKAGIVPVEYR 186

BLAST of MELO3C024487 vs. TrEMBL
Match: V7CX87_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G181600g PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.2e-17
Identity = 39/52 (75.00%), Postives = 45/52 (86.54%), Query Frame = 1

Query: 1   MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYR 53
           +VT TN CPPNY+LP DNGGWCNPP EHFD+AKP +L IAE+KAGIVP+ YR
Sbjct: 118 LVTATNLCPPNYDLPSDNGGWCNPPREHFDLAKPAYLKIAEYKAGIVPIQYR 169

BLAST of MELO3C024487 vs. TrEMBL
Match: M5Y135_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019174mg PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.2e-17
Identity = 41/50 (82.00%), Postives = 44/50 (88.00%), Query Frame = 1

Query: 3   TGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYR 53
           T TN+CPPN+N   DNGGWCNPP EHFDIAKPVFLNIAE+KAGIVPV YR
Sbjct: 102 TATNNCPPNWNQASDNGGWCNPPREHFDIAKPVFLNIAEYKAGIVPVEYR 151

BLAST of MELO3C024487 vs. TAIR10
Match: AT5G02260.1 (AT5G02260.1 expansin A9)

HSP 1 Score: 90.9 bits (224), Expect = 2.7e-19
Identity = 36/52 (69.23%), Postives = 43/52 (82.69%), Query Frame = 1

Query: 1   MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYR 53
           ++T TN CPPN+N   DNGGWCNPP EHFD+A P+FL+IA++KAGIVPV+YR
Sbjct: 104 LITATNFCPPNFNQASDNGGWCNPPREHFDLAMPMFLSIAKYKAGIVPVSYR 155

BLAST of MELO3C024487 vs. TAIR10
Match: AT2G39700.1 (AT2G39700.1 expansin A4)

HSP 1 Score: 89.4 bits (220), Expect = 7.7e-19
Identity = 36/52 (69.23%), Postives = 41/52 (78.85%), Query Frame = 1

Query: 1   MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYR 53
           ++T TN CPPN   P DNGGWCNPP EHFD+A PVFL IA+++AGIVPV+YR
Sbjct: 103 LITATNFCPPNLAQPSDNGGWCNPPREHFDLAMPVFLKIAQYRAGIVPVSYR 154

BLAST of MELO3C024487 vs. TAIR10
Match: AT3G55500.1 (AT3G55500.1 expansin A16)

HSP 1 Score: 87.8 bits (216), Expect = 2.2e-18
Identity = 36/51 (70.59%), Postives = 39/51 (76.47%), Query Frame = 1

Query: 2   VTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYR 53
           VT TN CPPN   P DNGGWCNPP  HFD+A PVFL IAE++AGIVP++YR
Sbjct: 107 VTATNFCPPNLAQPSDNGGWCNPPRSHFDLAMPVFLKIAEYRAGIVPISYR 157

BLAST of MELO3C024487 vs. TAIR10
Match: AT1G26770.2 (AT1G26770.2 expansin A10)

HSP 1 Score: 87.4 bits (215), Expect = 2.9e-18
Identity = 36/52 (69.23%), Postives = 42/52 (80.77%), Query Frame = 1

Query: 1   MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYR 53
           +VT TN CPPN  L  +NGGWCNPPLEHFD+A+PVF  IA+++AGIVPV+YR
Sbjct: 106 VVTATNFCPPNNALANNNGGWCNPPLEHFDLAQPVFQRIAQYRAGIVPVSYR 157

BLAST of MELO3C024487 vs. TAIR10
Match: AT2G40610.1 (AT2G40610.1 expansin A8)

HSP 1 Score: 87.4 bits (215), Expect = 2.9e-18
Identity = 35/51 (68.63%), Postives = 41/51 (80.39%), Query Frame = 1

Query: 2   VTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYR 53
           VT TN CPPN  L  DNGGWCNPPL+HFD+A+P FL IA+++AGIVPV++R
Sbjct: 101 VTATNFCPPNPGLSNDNGGWCNPPLQHFDLAEPAFLQIAQYRAGIVPVSFR 151

BLAST of MELO3C024487 vs. NCBI nr
Match: gi|659125098|ref|XP_008462508.1| (PREDICTED: expansin-A9-like [Cucumis melo])

HSP 1 Score: 119.8 bits (299), Expect = 1.5e-24
Identity = 51/52 (98.08%), Postives = 52/52 (100.00%), Query Frame = 1

Query: 1   MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYR 53
           MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVP+TYR
Sbjct: 126 MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPITYR 177

BLAST of MELO3C024487 vs. NCBI nr
Match: gi|449451233|ref|XP_004143366.1| (PREDICTED: expansin-A3-like [Cucumis sativus])

HSP 1 Score: 114.4 bits (285), Expect = 6.4e-23
Identity = 48/52 (92.31%), Postives = 51/52 (98.08%), Query Frame = 1

Query: 1   MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYR 53
           +VTGTNHCPPN+NLP DNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVP+TYR
Sbjct: 126 VVTGTNHCPPNHNLPNDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPITYR 177

BLAST of MELO3C024487 vs. NCBI nr
Match: gi|764617552|ref|XP_004306268.2| (PREDICTED: expansin-A9-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 104.4 bits (259), Expect = 6.6e-20
Identity = 44/51 (86.27%), Postives = 46/51 (90.20%), Query Frame = 1

Query: 2   VTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYR 53
           VT TNHCPPNYNLP DNGGWCN P EHFDIAKPVFLNIAE+KAGIVP+ YR
Sbjct: 109 VTATNHCPPNYNLPSDNGGWCNAPREHFDIAKPVFLNIAEYKAGIVPIIYR 159

BLAST of MELO3C024487 vs. NCBI nr
Match: gi|657990600|ref|XP_008387521.1| (PREDICTED: expansin-A9-like [Malus domestica])

HSP 1 Score: 102.1 bits (253), Expect = 3.3e-19
Identity = 43/51 (84.31%), Postives = 45/51 (88.24%), Query Frame = 1

Query: 2   VTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYR 53
           VT TNHCPPNYNLP DNGGWCN P EHFDIAKP+FL IAE+KAGIVPV YR
Sbjct: 137 VTATNHCPPNYNLPSDNGGWCNSPREHFDIAKPIFLQIAEYKAGIVPVEYR 187

BLAST of MELO3C024487 vs. NCBI nr
Match: gi|657990605|ref|XP_008387523.1| (PREDICTED: expansin-A9-like [Malus domestica])

HSP 1 Score: 98.2 bits (243), Expect = 4.7e-18
Identity = 41/51 (80.39%), Postives = 45/51 (88.24%), Query Frame = 1

Query: 2   VTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYR 53
           VT TN+CPPN+N   DNGGWCNPP EHFDIAKPVF NIAE+KAGI+PVTYR
Sbjct: 123 VTATNNCPPNWNQASDNGGWCNPPREHFDIAKPVFFNIAEYKAGIIPVTYR 173

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
EXPA7_ORYSJ1.2e-1871.15Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXPA7 PE=2 SV=1[more]
EXPA9_ARATH4.7e-1869.23Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 SV=1[more]
EXPA4_ARATH1.4e-1769.23Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 SV=1[more]
EXPA4_ORYSJ2.3e-1768.63Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXPA4 PE=2 SV=1[more]
EXPA4_ORYSI2.3e-1768.63Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0KIG7_CUCSA4.4e-2392.31Uncharacterized protein OS=Cucumis sativus GN=Csa_6G448160 PE=4 SV=1[more]
M5XS81_PRUPE7.3e-1878.43Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019560mg PE=4 SV=1[more]
M5W2X0_PRUPE1.2e-1782.69Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009524mg PE=4 SV=1[more]
V7CX87_PHAVU1.2e-1775.00Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G181600g PE=4 SV=1[more]
M5Y135_PRUPE1.2e-1782.00Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019174mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G02260.12.7e-1969.23 expansin A9[more]
AT2G39700.17.7e-1969.23 expansin A4[more]
AT3G55500.12.2e-1870.59 expansin A16[more]
AT1G26770.22.9e-1869.23 expansin A10[more]
AT2G40610.12.9e-1868.63 expansin A8[more]
Match NameE-valueIdentityDescription
gi|659125098|ref|XP_008462508.1|1.5e-2498.08PREDICTED: expansin-A9-like [Cucumis melo][more]
gi|449451233|ref|XP_004143366.1|6.4e-2392.31PREDICTED: expansin-A3-like [Cucumis sativus][more]
gi|764617552|ref|XP_004306268.2|6.6e-2086.27PREDICTED: expansin-A9-like [Fragaria vesca subsp. vesca][more]
gi|657990600|ref|XP_008387521.1|3.3e-1984.31PREDICTED: expansin-A9-like [Malus domestica][more]
gi|657990605|ref|XP_008387523.1|4.7e-1880.39PREDICTED: expansin-A9-like [Malus domestica][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002963Expansin
IPR007112Expansin/allergen_DPBB_dom
IPR009009RlpA-like_DPBB
Vocabulary: Biological Process
TermDefinition
GO:0009664plant-type cell wall organization
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009664 plant-type cell wall organization
cellular_component GO:0005618 cell wall
cellular_component GO:0005576 extracellular region
cellular_component GO:0016020 membrane
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C024487T1MELO3C024487T1mRNA


Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002963ExpansinPRINTSPR01226EXPANSINcoord: 19..36
score: 5.5E-14coord: 36..49
score: 5.5
IPR007112Expansin/pollen allergen, DPBB domainSMARTSM00837dpbb_1coord: 1..51
score: 6.7
IPR007112Expansin/pollen allergen, DPBB domainPROFILEPS50842EXPANSIN_EG45coord: 1..54
score: 9
IPR009009RlpA-like protein, double-psi beta-barrel domainGENE3DG3DSA:2.40.40.10coord: 1..52
score: 2.4
IPR009009RlpA-like protein, double-psi beta-barrel domainPFAMPF03330DPBB_1coord: 2..51
score: 4.
IPR009009RlpA-like protein, double-psi beta-barrel domainunknownSSF50685Barwin-like endoglucanasescoord: 2..52
score: 4.19
NoneNo IPR availablePANTHERPTHR31867FAMILY NOT NAMEDcoord: 1..52
score: 1.1
NoneNo IPR availablePANTHERPTHR31867:SF22EXPANSIN-A8coord: 1..52
score: 1.1

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C024487Cucumber (Chinese Long) v3cucmeB261
MELO3C024487Cucumber (Chinese Long) v3cucmeB521
MELO3C024487Cucumber (Chinese Long) v3cucmeB523
MELO3C024487Watermelon (97103) v2mewmbB518
MELO3C024487Watermelon (97103) v2mewmbB528
MELO3C024487Watermelon (97103) v2mewmbB539
MELO3C024487Wax gourdmewgoB614
MELO3C024487Wax gourdmewgoB629
MELO3C024487Wax gourdmewgoB639
MELO3C024487Melon (DHL92) v3.5.1memeB062
MELO3C024487Melon (DHL92) v3.5.1memeB142
MELO3C024487Cucumber (Gy14) v1cgymeB194
MELO3C024487Cucumber (Gy14) v1cgymeB507
MELO3C024487Cucumber (Gy14) v1cgymeB633
MELO3C024487Cucurbita maxima (Rimu)cmameB248
MELO3C024487Cucurbita maxima (Rimu)cmameB609
MELO3C024487Cucurbita maxima (Rimu)cmameB799
MELO3C024487Cucurbita moschata (Rifu)cmomeB236
MELO3C024487Cucurbita moschata (Rifu)cmomeB598
MELO3C024487Cucurbita moschata (Rifu)cmomeB763
MELO3C024487Cucurbita moschata (Rifu)cmomeB783
MELO3C024487Wild cucumber (PI 183967)cpimeB257
MELO3C024487Wild cucumber (PI 183967)cpimeB513
MELO3C024487Wild cucumber (PI 183967)cpimeB515
MELO3C024487Cucumber (Chinese Long) v2cumeB261
MELO3C024487Cucumber (Chinese Long) v2cumeB508
MELO3C024487Cucumber (Chinese Long) v2cumeB509
MELO3C024487Watermelon (Charleston Gray)mewcgB507
MELO3C024487Watermelon (Charleston Gray)mewcgB522
MELO3C024487Watermelon (Charleston Gray)mewcgB531
MELO3C024487Watermelon (97103) v1mewmB553
MELO3C024487Watermelon (97103) v1mewmB584
MELO3C024487Cucurbita pepo (Zucchini)cpemeB069
MELO3C024487Cucurbita pepo (Zucchini)cpemeB458
MELO3C024487Cucurbita pepo (Zucchini)cpemeB592
MELO3C024487Bottle gourd (USVL1VR-Ls)lsimeB150
MELO3C024487Bottle gourd (USVL1VR-Ls)lsimeB274
MELO3C024487Cucumber (Gy14) v2cgybmeB223
MELO3C024487Cucumber (Gy14) v2cgybmeB448
MELO3C024487Cucumber (Gy14) v2cgybmeB446
MELO3C024487Silver-seed gourdcarmeB0242
MELO3C024487Silver-seed gourdcarmeB0253
MELO3C024487Silver-seed gourdcarmeB0654