MELO3C024469 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C024469
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionRING Finger Ubiquitin ligase, putative
Locationchr8 : 9105664 .. 9108423 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTCATTAATCTTTAAGACAGAAGAGCCTCTACTTTAGGCGTTGTTGAAAATTTTCAAAATATCGATACTGAAAGATAGAATTTCCAACGGCGCGGGAAGCTAAGCTGACAAAAATTTTCTCACTTTCCACCGATCCGAAACGCCTTCCAGAAAGAAAACGCCATTATCGGCCGACCGCCATAGCTTCCGTTACAGAATTAGGGCTTCATATCTGAGAAGTCGGATAGGGCTTGAAGGAGCAAACAGATAAAACGCGATTTCTCTTCGTTGTCTTCACATTTCGAGTCTTCAATGCCGGACTCCGACATTCTGCATGTTCATTACGAAGTCGAAGATGTTGACGACGGGGGAGGAGAAGAAGAAGAGGAGGAGGAGGAGGATGACGACGACGACGAGGAGACTGACGAAAGTGAGGAAACAGTAGAAGGGCATGCGGAAGAAGGAGTTGATTATGTTCCTGAGGTGTTGCAATCGCCTAGGGCTTCACAAACGGGTACCACCGGATCTGCTCAAGCTAGGGTTTCGTTTTGGGTTGAGGAAGAGTTAGACAAGCGGAGAAGGACCGAGGGAGGTGAAGCGAGTTCTTCGCAGAATGAATGGAATCGGAATGAAAATGACGACATGATTTGCTCTATTTGCATGGATGCGTGGACCAATTACGGTGAACATCATATTTGGTGCGAACAATTGGTCTTTATTCTCTCTTGCACTTCATACCCATTTGTGTTTCTTTAACGAAAAGTTCAGTCAAAGACTAGAATTATTGGTTGATAATATGTCAGTTCTGTTTTTCCACTTCGTTGGTGACTGGTTTCAAGATAGTTACGATGGGGGTATAAAGTAAATAGCTCGTGCAAATTTGTAACTAGTTTAGATTTGAACTTCGGATCGAGTAGCCTCTACTTCAGGGAATTATCTGTTCAATTAAGTTGTCCTTATAGGCTATGATATCTATTGCTTCTTCATGATACACTACTCTTGACTTCACGGTTTAATGATTTACGGGATTGTACTATTTTCAGAAGATAGTATGTGTAGTCTCTTTTGATTAGGTCTTTTATTTTGGCAATTCATACTTTCTGTTGAAATTGGAATAGTCAGCGCTATTAACTTGTTAATGAACCGGACCATTACCCATGTTAATGTTCCTTAAAGTCGTCTAATTGTCTCGTGTGACTGCAGTTGTCTTCCTTGTGGGCACTTGTATGGCATGTCTTGTATCAATAGATGGTTGCAACAACGTAAAAATGCAGGGAAGGTATTTGTCCACACAATGATTAGGTTCTGCATTTTGATAAAACTATGATTAATTTACACAAAAATTAACCTTCCCTCCTTCCAAAAACAGTGTCCACAGTGTAATAGGAAGTGTTCCACGAAGGATGTCAGGAAACTTTTTGCACCACGAATTGTTGCTGCTGATGGAGAATCTCAAAAGGTTTTCCTAAATTCTAAGGGTTGATGTGCGTTTTTAAGTTTTAAGGAGGAGGCTAATCTTGATTAGGATTCTGCCTTTTTTTCCTTTTCAGAGAATCAAGTCACTTGAAGCTACTTGTGCCTCTCTTGAGAAGAAGGTCCGTGAAATTACCCCTTTAAAGTAATTCATAATATAAATCTTCTAAATTTGCTCTTAATACATTTCAAACTTTCGTTTCATTTTTTATCTTTCAACAATCTAAAAAGGCGTGGCCTCATCTTTCTTTCCTTGTCTAAAAAATGTTAACTTTTTTCATTAATCTCAAACAAAACCTCTAATTTTTAGAAGTTTTGATGTCTTATTATTCACAATATTACCTCTTTTCATATATGAGAAATTATTACGTTTTCCTATTCCCCGTCTCAGAGAGAGTAAGGGAGGGAGGGAAATCATTTTTTATAATTGTGCTTTAGTGCACATAAACACCAATATGTCAATGTGTTTGTTGTTATTACTTTCAAACCCTTATATATATACGCCTTCAATTTGATTTAGGATGCAAATTGGTGTAGAAAAGAAGTTGAATGGAAAAAGAGAGAAACAGATTTGCAATTGAAGCTTCAAGAACTTTCTGAGGTATATTTTTAATTGCAAAGTTCCATATAGTTTTCTCCTCTTCATTGCGTAATTGATCTTTTGAATAACTTAATTCTGATTTAGAGATGGCACCTGTCGTATCTCGAAGCATCTTCACCCTGTCCTCTAAATTTTTGTTTTGCTTAGTGTTATACATCCCATTCTTGGATTTTGACTATTTTCTTTTGTTATGTTCGTTTTCGATTGTTGGCCAGATATCCTATTTTATATGTCTTGTTTCAAATTGTTTTCATCTAGTAGTATTTTCAATATTCAATTTGTCGTGCCTTGCTTTTGCGTTGGTGACTAGGTTAGGTCTTTAAAGCTGGTGGAATTTACGCACTTACATGTCATGGAAAAACATGAGATGCATTGAACCATATAAAAAATGCACATAGTTTCCGTTTCCAAAGGCCATTATTGCATGGTTTGAAACTGGCTTATTCGTAGATATTTTATTTCCTATTGAGTTACTACTATTATTCTTGTCTCTCGCCACCGAATAGATGTATAATCTTCATGTATAGAAATGAAATTATGTAAACACAAGTATAAACAAATGCGAATATGAACAAATTACATTTTATTTCTTTGTTGTAATCAGAAGACAAGTGTTGAGGATTGTTCTAGGTGGACTTGTCCTGCTGGGATGGTCGCATGGCTGTCTGACAGAAGCCAACTGTTGAGAAAACATCTCTTTGACTAG

mRNA sequence

ATTCATTAATCTTTAAGACAGAAGAGCCTCTACTTTAGGCGTTGTTGAAAATTTTCAAAATATCGATACTGAAAGATAGAATTTCCAACGGCGCGGGAAGCTAAGCTGACAAAAATTTTCTCACTTTCCACCGATCCGAAACGCCTTCCAGAAAGAAAACGCCATTATCGGCCGACCGCCATAGCTTCCGTTACAGAATTAGGGCTTCATATCTGAGAAGTCGGATAGGGCTTGAAGGAGCAAACAGATAAAACGCGATTTCTCTTCGTTGTCTTCACATTTCGAGTCTTCAATGCCGGACTCCGACATTCTGCATGTTCATTACGAAGTCGAAGATGTTGACGACGGGGGAGGAGAAGAAGAAGAGGAGGAGGAGGAGGATGACGACGACGACGAGGAGACTGACGAAAGTGAGGAAACAGTAGAAGGGCATGCGGAAGAAGGAGTTGATTATGTTCCTGAGGTGTTGCAATCGCCTAGGGCTTCACAAACGGGTACCACCGGATCTGCTCAAGCTAGGGTTTCGTTTTGGGTTGAGGAAGAGTTAGACAAGCGGAGAAGGACCGAGGGAGGTGAAGCGAGTTCTTCGCAGAATGAATGGAATCGGAATGAAAATGACGACATGATTTGCTCTATTTGCATGGATGCGTGGACCAATTACGGTGAACATCATATTTGTTGTCTTCCTTGTGGGCACTTGTATGGCATGTCTTGTATCAATAGATGGTTGCAACAACGTAAAAATGCAGGGAAGTGTCCACAGTGTAATAGGAAGTGTTCCACGAAGGATGTCAGGAAACTTTTTGCACCACGAATTGTTGCTGCTGATGGAGAATCTCAAAAGAGAATCAAGTCACTTGAAGCTACTTGTGCCTCTCTTGAGAAGAAGGATGCAAATTGGTGTAGAAAAGAAGTTGAATGGAAAAAGAGAGAAACAGATTTGCAATTGAAGCTTCAAGAACTTTCTGAGAAGACAAGTGTTGAGGATTGTTCTAGGTGGACTTGTCCTGCTGGGATGGTCGCATGGCTGTCTGACAGAAGCCAACTGTTGAGAAAACATCTCTTTGACTAG

Coding sequence (CDS)

ATGCCGGACTCCGACATTCTGCATGTTCATTACGAAGTCGAAGATGTTGACGACGGGGGAGGAGAAGAAGAAGAGGAGGAGGAGGAGGATGACGACGACGACGAGGAGACTGACGAAAGTGAGGAAACAGTAGAAGGGCATGCGGAAGAAGGAGTTGATTATGTTCCTGAGGTGTTGCAATCGCCTAGGGCTTCACAAACGGGTACCACCGGATCTGCTCAAGCTAGGGTTTCGTTTTGGGTTGAGGAAGAGTTAGACAAGCGGAGAAGGACCGAGGGAGGTGAAGCGAGTTCTTCGCAGAATGAATGGAATCGGAATGAAAATGACGACATGATTTGCTCTATTTGCATGGATGCGTGGACCAATTACGGTGAACATCATATTTGTTGTCTTCCTTGTGGGCACTTGTATGGCATGTCTTGTATCAATAGATGGTTGCAACAACGTAAAAATGCAGGGAAGTGTCCACAGTGTAATAGGAAGTGTTCCACGAAGGATGTCAGGAAACTTTTTGCACCACGAATTGTTGCTGCTGATGGAGAATCTCAAAAGAGAATCAAGTCACTTGAAGCTACTTGTGCCTCTCTTGAGAAGAAGGATGCAAATTGGTGTAGAAAAGAAGTTGAATGGAAAAAGAGAGAAACAGATTTGCAATTGAAGCTTCAAGAACTTTCTGAGAAGACAAGTGTTGAGGATTGTTCTAGGTGGACTTGTCCTGCTGGGATGGTCGCATGGCTGTCTGACAGAAGCCAACTGTTGAGAAAACATCTCTTTGACTAG

Protein sequence

MPDSDILHVHYEVEDVDDGGGEEEEEEEEDDDDDEETDESEETVEGHAEEGVDYVPEVLQSPRASQTGTTGSAQARVSFWVEEELDKRRRTEGGEASSSQNEWNRNENDDMICSICMDAWTNYGEHHICCLPCGHLYGMSCINRWLQQRKNAGKCPQCNRKCSTKDVRKLFAPRIVAADGESQKRIKSLEATCASLEKKDANWCRKEVEWKKRETDLQLKLQELSEKTSVEDCSRWTCPAGMVAWLSDRSQLLRKHLFD*
Homology
[Close]
BLAST of MELO3C024469 vs. TrEMBL
Match: A0A0A0KER3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G446500 PE=4 SV=1)

HSP 1 Score: 449.1 bits (1154), Expect = 3.6e-123
Identity = 209/229 (91.27%), Postives = 225/229 (98.25%), Query Frame = 1 

Query: 1   MPDSDILHVHYEVEDVDDGGGEEEEEEEEDDDDDEETDESEETVEGHAEEGVDYVPEVLQ 60
           MPDSDILHVHYEVEDVDDGGGEEE+E+EE ++++EETD+SEETVEGHAEE VDYVPEVLQ
Sbjct: 1   MPDSDILHVHYEVEDVDDGGGEEEQEQEE-EEEEEETDDSEETVEGHAEEEVDYVPEVLQ 60

Query: 61  SPRASQTGTTGSAQARVSFWVEEELDKRRRTEGGEASSSQNEWNRNENDDMICSICMDAW 120
           SPRASQTGT GSAQARVSFWVEEE+DKRRRTEGGEASSSQNEWNR+ENDDMICSICMDAW
Sbjct: 61  SPRASQTGTPGSAQARVSFWVEEEVDKRRRTEGGEASSSQNEWNRSENDDMICSICMDAW 120

Query: 121 TNYGEHHICCLPCGHLYGMSCINRWLQQRKNAGKCPQCNRKCSTKDVRKLFAPRIVAADG 180
           TNYGEHHICCLPCGHLYGMSCINRWLQQRKNAGKCPQCNRKCSTKDVRK+FAPRIVAADG
Sbjct: 121 TNYGEHHICCLPCGHLYGMSCINRWLQQRKNAGKCPQCNRKCSTKDVRKIFAPRIVAADG 180

Query: 181 ESQKRIKSLEATCASLEKKDANWCRKEVEWKKRETDLQLKLQELSEKTS 230
           ESQKRIKSLEATCASLEKK+ANWC+KEVEWKKRETD+Q KL+ELSE+T+
Sbjct: 181 ESQKRIKSLEATCASLEKKEANWCKKEVEWKKRETDMQSKLRELSERTN 228

[Close]
BLAST of MELO3C024469 vs. TrEMBL
Match: A0A067K298_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16562 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 2.2e-48
Identity = 92/158 (58.23%), Postives = 114/158 (72.15%), Query Frame = 1 

Query: 81  VEEELDKRRRT-----------EGGEASSSQNEWNRNENDDMICSICMDAWTNYGEHHIC 140
           VEEE  KRRR            E    SS   EWNR E D   C ICMDAWT+ G+HHIC
Sbjct: 39  VEEENSKRRRVQREVETRSLIGEENAESSQGKEWNRTEIDGHFCPICMDAWTSEGDHHIC 98

Query: 141 CLPCGHLYGMSCINRWLQQRKNAGKCPQCNRKCSTKDVRKLFAPRIVAADGESQKRIKSL 200
           CLPCGHL+G+SCI++WL+Q +++ KCPQCNRK + KD+RKLFAPRI   D ESQK I+SL
Sbjct: 99  CLPCGHLFGLSCISKWLKQERSSAKCPQCNRKSTLKDIRKLFAPRIAVVDEESQKTIRSL 158

Query: 201 EATCASLEKKDANWCRKEVEWKKRETDLQLKLQELSEK 228
           E  CA+LEKKD +W RKE EW++RE  LQLK+++L+E+
Sbjct: 159 EVKCAALEKKDDDWRRKESEWQRREAGLQLKVKQLTER 196

[Close]
BLAST of MELO3C024469 vs. TAIR10
Match: AT5G03450.1 (AT5G03450.1 Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 193.7 bits (491), Expect = 1.4e-49
Identity = 96/218 (44.04%), Postives = 137/218 (62.84%), Query Frame = 1 

Query: 21  GEEEEEEEEDDDDD-------EETDESEETVEGHAEEGVDYVPEVLQSPRASQTGTTGSA 80
           GEEE+EEEED+++        +E DE EE  E    +  +Y+ +VL SP           
Sbjct: 30  GEEEDEEEEDEEEAYVDYGEVQEEDEEEEEEEDSERQTREYI-DVLDSP----------- 89

Query: 81  QARVSFWVEEELDKRRRTEGGEASSSQN----EWNRNENDDMICSICMDAWTNYGEHHIC 140
             RVS    E ++ + R++G  +SSS +    EW + + + + CSICM+ WT+ G+H +C
Sbjct: 90  -VRVSQNESEGIENQNRSQGVCSSSSGSQEDVEWKQGDTEGLSCSICMEVWTSGGQHQVC 149

Query: 141 CLPCGHLYGMSCINRWLQQRKNAGKCPQCNRKCSTKDVRKLFAPRIVAADGESQKRIKSL 200
           CLPCGHLYG SCIN+W QQR++ GKCP CN+ CS +DVRK++A R+ A D E+ KRI  L
Sbjct: 150 CLPCGHLYGYSCINKWFQQRRSGGKCPLCNKICSLRDVRKIYASRVAAVDDEAHKRILFL 209

Query: 201 EATCASLEKKDANWCRKEVEWKKRETDLQLKLQELSEK 228
           EA   S+E+K A+W  KEV+WK  E +L+L++ +L +K
Sbjct: 210 EAKLRSIEQKTASWSNKEVQWKITEAELRLEVTKLKKK 234

[Close]
BLAST of MELO3C024469 vs. NCBI nr
Match: gi|659125046|ref|XP_008462482.1| (PREDICTED: E3 ubiquitin-protein ligase RFWD3 [Cucumis melo])

HSP 1 Score: 482.3 bits (1240), Expect = 5.5e-133
Identity = 227/229 (99.13%), Postives = 229/229 (100.00%), Query Frame = 1 

Query: 1   MPDSDILHVHYEVEDVDDGGGEEEEEEEEDDDDDEETDESEETVEGHAEEGVDYVPEVLQ 60
           MPDSDILHVHYEVEDVDDGGGEEEEEEEEDDDDDEETDESEETVEGHAEEGVDYVPEVLQ
Sbjct: 1   MPDSDILHVHYEVEDVDDGGGEEEEEEEEDDDDDEETDESEETVEGHAEEGVDYVPEVLQ 60

Query: 61  SPRASQTGTTGSAQARVSFWVEEELDKRRRTEGGEASSSQNEWNRNENDDMICSICMDAW 120
           SPRASQTGTTGSAQARVSFWVEEELDKRRRTEGGEASSSQNEWNRNENDDMICSICMDAW
Sbjct: 61  SPRASQTGTTGSAQARVSFWVEEELDKRRRTEGGEASSSQNEWNRNENDDMICSICMDAW 120

Query: 121 TNYGEHHICCLPCGHLYGMSCINRWLQQRKNAGKCPQCNRKCSTKDVRKLFAPRIVAADG 180
           TNYGEHHICCLPCGHLYGMSCINRWLQQRKNAGKCPQCNRKCSTKDVRKLFAPRIVAADG
Sbjct: 121 TNYGEHHICCLPCGHLYGMSCINRWLQQRKNAGKCPQCNRKCSTKDVRKLFAPRIVAADG 180

Query: 181 ESQKRIKSLEATCASLEKKDANWCRKEVEWKKRETDLQLKLQELSEKTS 230
           ESQKRIKSLEATCASLEKKDANWCRKEVEWKKRETDLQLKLQELSE+T+
Sbjct: 181 ESQKRIKSLEATCASLEKKDANWCRKEVEWKKRETDLQLKLQELSERTN 229

[Close]
BLAST of MELO3C024469 vs. NCBI nr
Match: gi|449451221|ref|XP_004143360.1| (PREDICTED: E3 ubiquitin-protein ligase RFWD3 [Cucumis sativus])

HSP 1 Score: 449.1 bits (1154), Expect = 5.2e-123
Identity = 209/229 (91.27%), Postives = 225/229 (98.25%), Query Frame = 1 

Query: 1   MPDSDILHVHYEVEDVDDGGGEEEEEEEEDDDDDEETDESEETVEGHAEEGVDYVPEVLQ 60
           MPDSDILHVHYEVEDVDDGGGEEE+E+EE ++++EETD+SEETVEGHAEE VDYVPEVLQ
Sbjct: 1   MPDSDILHVHYEVEDVDDGGGEEEQEQEE-EEEEEETDDSEETVEGHAEEEVDYVPEVLQ 60

Query: 61  SPRASQTGTTGSAQARVSFWVEEELDKRRRTEGGEASSSQNEWNRNENDDMICSICMDAW 120
           SPRASQTGT GSAQARVSFWVEEE+DKRRRTEGGEASSSQNEWNR+ENDDMICSICMDAW
Sbjct: 61  SPRASQTGTPGSAQARVSFWVEEEVDKRRRTEGGEASSSQNEWNRSENDDMICSICMDAW 120

Query: 121 TNYGEHHICCLPCGHLYGMSCINRWLQQRKNAGKCPQCNRKCSTKDVRKLFAPRIVAADG 180
           TNYGEHHICCLPCGHLYGMSCINRWLQQRKNAGKCPQCNRKCSTKDVRK+FAPRIVAADG
Sbjct: 121 TNYGEHHICCLPCGHLYGMSCINRWLQQRKNAGKCPQCNRKCSTKDVRKIFAPRIVAADG 180

Query: 181 ESQKRIKSLEATCASLEKKDANWCRKEVEWKKRETDLQLKLQELSEKTS 230
           ESQKRIKSLEATCASLEKK+ANWC+KEVEWKKRETD+Q KL+ELSE+T+
Sbjct: 181 ESQKRIKSLEATCASLEKKEANWCKKEVEWKKRETDMQSKLRELSERTN 228

[Close]
BLAST of MELO3C024469 vs. NCBI nr
Match: gi|1021528624|ref|XP_016207757.1| (PREDICTED: E3 ubiquitin-protein ligase RFWD3 [Arachis ipaensis])

HSP 1 Score: 238.0 bits (606), Expect = 1.8e-59
Identity = 116/231 (50.22%), Postives = 156/231 (67.53%), Query Frame = 1 

Query: 2   PDSDILHVHYEVEDVDDGGGEEEEEEEEDDDDDEETDESEETVEGHAEEGVDYVPEVLQS 61
           P + +    Y V D D+   EEEEEEEE+++++EE D++EE  E  +   +   P    +
Sbjct: 12  PHATVTAADYGVSDDDED--EEEEEEEEEEEEEEEEDDNEED-EDSSPRALPVAPSTTSN 71

Query: 62  PRASQTGTTGSAQARVSFWVEEELDKRRRTEGGEASSSQ--------NEWNRNENDDMIC 121
           P+      T  +Q+  SF  ++  +KRR+TEG EASSS         +EWNR + D + C
Sbjct: 72  PQPIVI--TVESQSHSSFGDDDVSNKRRKTEGREASSSSLAIDGSQGSEWNRTDIDGLFC 131

Query: 122 SICMDAWTNYGEHHICCLPCGHLYGMSCINRWLQQRKNAGKCPQCNRKCSTKDVRKLFAP 181
            ICM+AWTN G+H ICCLPCGH+YGMSCI RWLQQR++ GKCPQCN KCS KDVRKL+A 
Sbjct: 132 PICMEAWTNSGDHQICCLPCGHIYGMSCIKRWLQQRRSTGKCPQCNIKCSLKDVRKLYAS 191

Query: 182 RIVAADGESQKRIKSLEATCASLEKKDANWCRKEVEWKKRETDLQLKLQEL 225
           ++V  D ESQK+I+SLEA CA+LE K A+WC KE  W+KRE   +L++Q+L
Sbjct: 192 QVVTVDDESQKKIRSLEAKCAALESKGADWCAKEALWRKREAAYRLEIQKL 237

[Close]
BLAST of MELO3C024469 vs. NCBI nr
Match: gi|1009160564|ref|XP_015898420.1| (PREDICTED: E3 ubiquitin-protein ligase RFWD3 isoform X3 [Ziziphus jujuba])

HSP 1 Score: 237.7 bits (605), Expect = 2.4e-59
Identity = 121/230 (52.61%), Postives = 150/230 (65.22%), Query Frame = 1 

Query: 12  EVEDVDDGGGEEEEEEEEDDDDDEETDESEETVEGHAEEGVDYVPEVLQSPRASQTGTTG 71
           +V DV D   EEE E EE++DDD E +E EE  + H     + V        A + G   
Sbjct: 23  QVIDVQDEDDEEEGEAEEEEDDDGEEEEEEEEEDEHQVADEEPVRVSHGEAAAFENG--- 82

Query: 72  SAQARVSFWVEEELDKRRRTEGGE------------ASSSQNEWNRNENDDMICSICMDA 131
                    VEE  +KRRR + G+             SS  NE   +E D + C ICM+A
Sbjct: 83  ---------VEEAGEKRRRIDSGDEALLWGGVGSVPGSSQGNECKWSEIDGLFCPICMEA 142

Query: 132 WTNYGEHHICCLPCGHLYGMSCINRWLQQRKNAGKCPQCNRKCSTKDVRKLFAPRIVAAD 191
           WT+ G HHICCLPCGH+YGMSCI RWLQQR+N+GKCPQCNRKC+ KDVRKLFAPRIVA D
Sbjct: 143 WTSDGVHHICCLPCGHIYGMSCIKRWLQQRRNSGKCPQCNRKCTLKDVRKLFAPRIVALD 202

Query: 192 GESQKRIKSLEATCASLEKKDANWCRKEVEWKKRETDLQLKLQELSEKTS 230
            ESQKRI+SLEA CASL+KK+  W +KE EWKKRE +L LK+++L+E+T+
Sbjct: 203 EESQKRIRSLEAKCASLKKKEVGWGKKEAEWKKREAELHLKVKQLTERTT 240

[Close]
BLAST of MELO3C024469 vs. NCBI nr
Match: gi|645272430|ref|XP_008241392.1| (PREDICTED: E3 ubiquitin-protein ligase RFWD3 [Prunus mume])

HSP 1 Score: 235.7 bits (600), Expect = 9.0e-59
Identity = 125/240 (52.08%), Postives = 159/240 (66.25%), Query Frame = 1 

Query: 2   PDSDILHVHYEV--EDVDDGGGEEEEEEEEDDDDDEETDESEETVEGHAEEGVDYVPEVL 61
           P S IL +  E   ED +   G  ++ ++EDD+D+EE +E E+ ++       DY    L
Sbjct: 6   PPSPILLLDDEELQEDQNAAPGFNDDGDDEDDEDEEE-EEDEDLID------TDYAVS-L 65

Query: 62  QSPRASQTGTTGSAQARVSFWVEEELDKRRRT-EG--------GEASSSQ-NEWNRNEND 121
           Q    S  G   S +   S   EE   KRRR  EG        G A SSQ + W RNE D
Sbjct: 66  QHSGVSHNGAGNSRETVASNGAEEWGRKRRRAGEGKTASCDGIGSAESSQGSHWTRNEID 125

Query: 122 DMICSICMDAWTNYGEHHICCLPCGHLYGMSCINRWLQQRKNAGKCPQCNRKCSTKDVRK 181
            + C IC++AWTN G+HHICCLPCGH+YGMSCI +WLQQRKN+GKCPQCN+KC+ KDVRK
Sbjct: 126 GLFCPICLEAWTNDGDHHICCLPCGHIYGMSCIRKWLQQRKNSGKCPQCNKKCALKDVRK 185

Query: 182 LFAPRIVAADGESQKRIKSLEATCASLEKKDANWCRKEVEWKKRETDLQLKLQELSEKTS 230
           LFA RIV+ D ESQK I+SLEA C SLEKK A WC+KE +W+K E +LQLK+Q+L+E+T+
Sbjct: 186 LFASRIVSVDEESQKMIRSLEAKCDSLEKKGAGWCKKEAQWRKLEAELQLKVQKLTERTT 237

The following BLAST results are available for this feature:
BLAST of MELO3C024469 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KER3_CUCSA3.6e-12391.27Uncharacterized protein OS=Cucumis sativus GN=Csa_6G446500 PE=4 SV=1[more]
A0A067K298_JATCU2.2e-4858.23Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16562 PE=4 SV=1[more]
BLAST of MELO3C024469 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G03450.11.4e-4944.04 Transducin/WD40 repeat-like superfamily protein[more]
BLAST of MELO3C024469 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659125046|ref|XP_008462482.1|5.5e-13399.13PREDICTED: E3 ubiquitin-protein ligase RFWD3 [Cucumis melo][more]
gi|449451221|ref|XP_004143360.1|5.2e-12391.27PREDICTED: E3 ubiquitin-protein ligase RFWD3 [Cucumis sativus][more]
gi|1021528624|ref|XP_016207757.1|1.8e-5950.22PREDICTED: E3 ubiquitin-protein ligase RFWD3 [Arachis ipaensis][more]
gi|1009160564|ref|XP_015898420.1|2.4e-5952.61PREDICTED: E3 ubiquitin-protein ligase RFWD3 isoform X3 [Ziziphus jujuba][more]
gi|645272430|ref|XP_008241392.1|9.0e-5952.08PREDICTED: E3 ubiquitin-protein ligase RFWD3 [Prunus mume][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0045454 cell redox homeostasis
biological_process GO:0034599 cellular response to oxidative stress
biological_process GO:0006662 glycerol ether metabolic process
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0006457 protein folding
biological_process GO:0000103 sulfate assimilation
cellular_component GO:0005575 cellular_component
cellular_component GO:0005737 cytoplasm
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor
molecular_function GO:0015035 protein disulfide oxidoreductase activity
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU55949melon EST collection version 4.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C024469T1MELO3C024469T1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU55949MU55949transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 113..159
score: 2.
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 113..158
score: 0
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 113..159
score: 11
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 97..168
score: 8.6
NoneNo IPR availablePANTHERPTHR16047RFWD3 PROTEINcoord: 12..223
score: 4.5
NoneNo IPR availablePANTHERPTHR16047:SF7E3 UBIQUITIN-PROTEIN LIGASE RFWD3coord: 12..223
score: 4.5
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 103..165
score: 5.18

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C024469Lsi01G013070Bottle gourd (USVL1VR-Ls)lsimeB150
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C024469Cucurbita moschata (Rifu)cmomeB236
MELO3C024469Cucurbita moschata (Rifu)cmomeB598
MELO3C024469Cucurbita moschata (Rifu)cmomeB763
MELO3C024469Cucurbita moschata (Rifu)cmomeB783
MELO3C024469Wild cucumber (PI 183967)cpimeB257
MELO3C024469Wild cucumber (PI 183967)cpimeB513
MELO3C024469Wild cucumber (PI 183967)cpimeB515
MELO3C024469Cucumber (Chinese Long) v2cumeB261
MELO3C024469Cucumber (Chinese Long) v2cumeB508
MELO3C024469Cucumber (Chinese Long) v2cumeB509
MELO3C024469Watermelon (Charleston Gray)mewcgB507
MELO3C024469Watermelon (Charleston Gray)mewcgB522
MELO3C024469Watermelon (Charleston Gray)mewcgB531
MELO3C024469Watermelon (97103) v1mewmB553
MELO3C024469Watermelon (97103) v1mewmB584
MELO3C024469Cucurbita pepo (Zucchini)cpemeB069
MELO3C024469Cucurbita pepo (Zucchini)cpemeB458
MELO3C024469Cucurbita pepo (Zucchini)cpemeB592
MELO3C024469Bottle gourd (USVL1VR-Ls)lsimeB274
MELO3C024469Cucumber (Gy14) v2cgybmeB223
MELO3C024469Cucumber (Gy14) v2cgybmeB448
MELO3C024469Cucumber (Gy14) v2cgybmeB446
MELO3C024469Silver-seed gourdcarmeB0242
MELO3C024469Silver-seed gourdcarmeB0253
MELO3C024469Silver-seed gourdcarmeB0654
MELO3C024469Cucumber (Chinese Long) v3cucmeB261
MELO3C024469Cucumber (Chinese Long) v3cucmeB521
MELO3C024469Cucumber (Chinese Long) v3cucmeB523
MELO3C024469Watermelon (97103) v2mewmbB518
MELO3C024469Watermelon (97103) v2mewmbB528
MELO3C024469Watermelon (97103) v2mewmbB539
MELO3C024469Wax gourdmewgoB614
MELO3C024469Wax gourdmewgoB629
MELO3C024469Wax gourdmewgoB639
MELO3C024469Melon (DHL92) v3.5.1memeB142
MELO3C024469Cucumber (Gy14) v1cgymeB194
MELO3C024469Cucumber (Gy14) v1cgymeB507
MELO3C024469Cucumber (Gy14) v1cgymeB633
MELO3C024469Cucurbita maxima (Rimu)cmameB248
MELO3C024469Cucurbita maxima (Rimu)cmameB609
MELO3C024469Cucurbita maxima (Rimu)cmameB799