MELO3C024453 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C024453
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionDNA-directed RNA polymerase
Locationchr1 : 35331531 .. 35332830 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGAGGAGAGCTGGAAAAATTGGGGAGTTTGTCAGTGTCTTTGTGAATGAGAAACAGGTGAGTTTCTTTTCTGCTCCTGTTCCCTATGCTCAATGTGCCAGCTACTCTACGTTTGTTCTTATGTTACAATGCCTAAGTATAGCATTGAGCACTTATGGATAGGATAACAGTATGCAGTCATTTTTAGCATTAAGTTTTAATTTATACATGCAATCATGCATTGTTGCAGTCACTTTAATCCATTCTGCTGGAGGAACACAAGCAACGTCTTTCATTTTAAATGCCTTAAACCCTGAGCATGGATATTATACTCCATGGATCTGTCATATTGTTTTGAAATTTTCTTGTATATAAAAATGTTTGATAATTTTTCTGGTGAAGAAGCTGAAAAGGTTGCATTTTTTGCAGTGGAGATATTCTTACGTATTTATGTTTATATGTAGTTGAGACACTAGTTTCATGAGATCATATTCTCACTTGACTGGGCTTGTGATGTCCTTCATTTTAAATATCAATCCTATTTTCCTGTTATTTATTTCATTTGTGGATGATTAAGCCTGTTTGATTAACTTGCATCAGCACTGTGTATACATTGCTTCTGATGGAGGACGGGTTTGCCGTCCACTTGTCATTGCTGACAAAGGTGTATCTAGGATTAGAGAATACCATATGAAAGAGTTATCGGTATGTGCATTTAGTCACTGTTGCTTTAAGTTCCTTTTTTTGTATTAATTTTTACCTTCAGATTGGAAATGAAATTTTTTTTTGTCCATTTTTCCTTTTTATTTATTTATTTTTCCACAGGATGGAGTCCGTACATTTGATGATTTTTTACGGGATGGTTTAATTGAGTATCTTGATGTGAATGAGGAGAATAATGCTTTGGTATACTCAACTGAATTGTCTGATGTTCTTTGGTTTCAGTATATTGATCAATAGAAGTATATTGAGTGCATACTTTTTCAGATTGCTTTATATGAAGGAGAAGCTACACCTGAAACAACCCATATCGAGATAGAGCCCTTGACCATTTTAGGTGTTGTAGCTGGACTAATTCCTTATCCTCATCATAACCAGTCACCTAGAAACACGTATCAGGTTTGTTTCTTAAACCTCCATGCTTCTCCCTACCCATTAATTATTTAAAGATCTTTAATTAACTATATTTTTTTCATAGTGTGCTATGGGAAAGCAAGCCATGGGAAATATTGCATACAATCAGGCAAGTATCTTTTTTTCGATTATTGATTGCAAGCCTCAGCTCTTTATTTATTTTTCTGCTCAAGTGGTAGGGTAG

mRNA sequence

ATGCTGAGGAGAGCTGGAAAAATTGGGGAGTTTGTCAGTGTCTTTGTGAATGAGAAACAGCACTGTGTATACATTGCTTCTGATGGAGGACGGGTTTGCCGTCCACTTGTCATTGCTGACAAAGGTGTATCTAGGATTAGAGAATACCATATGAAAGAGTTATCGGATGGAGTCCGTACATTTGATGATTTTTTACGGGATGGTTTAATTGAGTATCTTGATGTGAATGAGGAGAATAATGCTTTGATTGCTTTATATGAAGGAGAAGCTACACCTGAAACAACCCATATCGAGATAGAGCCCTTGACCATTTTAGGTGTTGTAGCTGGACTAATTCCTTATCCTCATCATAACCAGTCACCTAGAAACACGTATCAGTGTGCTATGGGAAAGCAAGCCATGGGAAATATTGCATACAATCAGGCAAGTATCTTTTTTTCGATTATTGATTGCAAGCCTCAGCTCTTTATTTATTTTTCTGCTCAAGTGGTAGGGTAG

Coding sequence (CDS)

ATGCTGAGGAGAGCTGGAAAAATTGGGGAGTTTGTCAGTGTCTTTGTGAATGAGAAACAGCACTGTGTATACATTGCTTCTGATGGAGGACGGGTTTGCCGTCCACTTGTCATTGCTGACAAAGGTGTATCTAGGATTAGAGAATACCATATGAAAGAGTTATCGGATGGAGTCCGTACATTTGATGATTTTTTACGGGATGGTTTAATTGAGTATCTTGATGTGAATGAGGAGAATAATGCTTTGATTGCTTTATATGAAGGAGAAGCTACACCTGAAACAACCCATATCGAGATAGAGCCCTTGACCATTTTAGGTGTTGTAGCTGGACTAATTCCTTATCCTCATCATAACCAGTCACCTAGAAACACGTATCAGTGTGCTATGGGAAAGCAAGCCATGGGAAATATTGCATACAATCAGGCAAGTATCTTTTTTTCGATTATTGATTGCAAGCCTCAGCTCTTTATTTATTTTTCTGCTCAAGTGGTAGGGTAG

Protein sequence

MLRRAGKIGEFVSVFVNEKQHCVYIASDGGRVCRPLVIADKGVSRIREYHMKELSDGVRTFDDFLRDGLIEYLDVNEENNALIALYEGEATPETTHIEIEPLTILGVVAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQASIFFSIIDCKPQLFIYFSAQVVG*
Homology
[Close]
BLAST of MELO3C024453 vs. Swiss-Prot
Match: NRPC2_ARATH (DNA-directed RNA polymerase III subunit 2 OS=Arabidopsis thaliana GN=NRPC2 PE=2 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 1.1e-67
Identity = 125/151 (82.78%), Postives = 131/151 (86.75%), Query Frame = 1 

Query: 2   LRRAGKIGEFVSVFVNEKQHCVYIASDGGRVCRPLVIADKGVSRIREYHMKELSDGVRTF 61
           LRRAGKIGEFVSVF NEKQHCVY+ASD GRVCRPLVIADKG+SR++++HMKEL DGVRTF
Sbjct: 573 LRRAGKIGEFVSVFTNEKQHCVYVASDVGRVCRPLVIADKGISRVKQHHMKELQDGVRTF 632

Query: 62  DDFLRDGLIEYLDVNEENNALIALYEGEATPE-----------TTHIEIEPLTILGVVAG 121
           DDF+RDGLIEYLDVNEENNALIALYE + T E           TTHIEIEP TILGVVAG
Sbjct: 633 DDFIRDGLIEYLDVNEENNALIALYESDGTTELDEGAEAAKADTTHIEIEPFTILGVVAG 692

Query: 122 LIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQ 142
           LIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQ
Sbjct: 693 LIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQ 723

[Close]
BLAST of MELO3C024453 vs. Swiss-Prot
Match: RPC2_YEAST (DNA-directed RNA polymerase III subunit RPC2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RET1 PE=1 SV=2)

HSP 1 Score: 205.7 bits (522), Expect = 4.0e-52
Identity = 98/157 (62.42%), Postives = 117/157 (74.52%), Query Frame = 1 

Query: 2   LRRAGKIGEFVSVFVNEKQHCVYIASDGGRVCRPLVIADKGVSRIREYHMKELSDGVRTF 61
           LRR GK+ EF+S++ N  Q  V+IA+DGGR+CRPL+I   G SR+++ H+++L DG   F
Sbjct: 578 LRRTGKVSEFISIYSNSHQMAVHIATDGGRICRPLIIVSDGQSRVKDIHLRKLLDGELDF 637

Query: 62  DDFLRDGLIEYLDVNEENNALIALYEGEATPETTHIEIEPLTILGVVAGLIPYPHHNQSP 121
           DDFL+ GL+EYLDVNEEN++ IALYE +  P  TH+EIEP TILG VAGLIPYPHHNQSP
Sbjct: 638 DDFLKLGLVEYLDVNEENDSYIALYEKDIVPSMTHLEIEPFTILGAVAGLIPYPHHNQSP 697

Query: 122 RNTYQCAMGKQAMGNIAYNQASIFFSIIDCKPQLFIY 159
           RNTYQCAMGKQA+G IAYNQ    F  ID    L  Y
Sbjct: 698 RNTYQCAMGKQAIGAIAYNQ----FKRIDTLLYLMTY 730

[Close]
BLAST of MELO3C024453 vs. Swiss-Prot
Match: RPC2_SCHPO (DNA-directed RNA polymerase III subunit RPC2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpc2 PE=2 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 7.5e-51
Identity = 88/140 (62.86%), Postives = 113/140 (80.71%), Query Frame = 1 

Query: 2   LRRAGKIGEFVSVFVNEKQHCVYIASDGGRVCRPLVIADKGVSRIREYHMKELSDGVRTF 61
           LRR+GKI  F+ +F+N  Q  V+I++DGGR+CRPL+I   G+ ++   H++ L +G   F
Sbjct: 591 LRRSGKISPFIGIFINTHQRAVFISTDGGRICRPLIIVQNGLPKVESKHIRLLKEGKWGF 650

Query: 62  DDFLRDGLIEYLDVNEENNALIALYEGEATPETTHIEIEPLTILGVVAGLIPYPHHNQSP 121
           +DFL+ GL+EY+DVNEEN++LI++YE + TP+TTH+EIEP TILG VAGLIPYPHHNQSP
Sbjct: 651 EDFLKQGLVEYVDVNEENDSLISVYERDITPDTTHLEIEPFTILGAVAGLIPYPHHNQSP 710

Query: 122 RNTYQCAMGKQAMGNIAYNQ 142
           RNTYQCAMGKQA+G IAYNQ
Sbjct: 711 RNTYQCAMGKQAIGAIAYNQ 730

[Close]
BLAST of MELO3C024453 vs. Swiss-Prot
Match: RPC2_MOUSE (DNA-directed RNA polymerase III subunit RPC2 OS=Mus musculus GN=Polr3b PE=1 SV=2)

HSP 1 Score: 196.1 bits (497), Expect = 3.1e-49
Identity = 91/141 (64.54%), Postives = 105/141 (74.47%), Query Frame = 1 

Query: 1   MLRRAGKIGEFVSVFVNEKQHCVYIASDGGRVCRPLVIADKGVSRIREYHMKELSDGVRT 60
           ++RRAG I EFVS+  N    CVYI+SDGGR+CRP +I  K    +   HM+EL+ G R 
Sbjct: 561 LMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQGYRN 620

Query: 61  FDDFLRDGLIEYLDVNEENNALIALYEGEATPETTHIEIEPLTILGVVAGLIPYPHHNQS 120
           F+DFL + L+EYLDVNEEN+  IALYE     +TTH+EIEP T+LGV AGLIPYPHHNQS
Sbjct: 621 FEDFLHESLVEYLDVNEENDCNIALYEHTINKDTTHLEIEPFTLLGVCAGLIPYPHHNQS 680

Query: 121 PRNTYQCAMGKQAMGNIAYNQ 142
           PRNTYQCAMGKQAMG I YNQ
Sbjct: 681 PRNTYQCAMGKQAMGTIGYNQ 701

[Close]
BLAST of MELO3C024453 vs. Swiss-Prot
Match: RPC2_HUMAN (DNA-directed RNA polymerase III subunit RPC2 OS=Homo sapiens GN=POLR3B PE=1 SV=2)

HSP 1 Score: 196.1 bits (497), Expect = 3.1e-49
Identity = 91/141 (64.54%), Postives = 105/141 (74.47%), Query Frame = 1 

Query: 1   MLRRAGKIGEFVSVFVNEKQHCVYIASDGGRVCRPLVIADKGVSRIREYHMKELSDGVRT 60
           ++RRAG I EFVS+  N    CVYI+SDGGR+CRP +I  K    +   HM+EL+ G R 
Sbjct: 561 LMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQGYRN 620

Query: 61  FDDFLRDGLIEYLDVNEENNALIALYEGEATPETTHIEIEPLTILGVVAGLIPYPHHNQS 120
           F+DFL + L+EYLDVNEEN+  IALYE     +TTH+EIEP T+LGV AGLIPYPHHNQS
Sbjct: 621 FEDFLHESLVEYLDVNEENDCNIALYEHTINKDTTHLEIEPFTLLGVCAGLIPYPHHNQS 680

Query: 121 PRNTYQCAMGKQAMGNIAYNQ 142
           PRNTYQCAMGKQAMG I YNQ
Sbjct: 681 PRNTYQCAMGKQAMGTIGYNQ 701

[Close]
BLAST of MELO3C024453 vs. TrEMBL
Match: A0A0B0MH19_GOSAR (DNA-directed RNA polymerase subunit beta OS=Gossypium arboreum GN=F383_10055 PE=3 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 1.4e-72
Identity = 135/157 (85.99%), Postives = 142/157 (90.45%), Query Frame = 1 

Query: 2   LRRAGKIGEFVSVFVNEKQHCVYIASDGGRVCRPLVIADKGVSRIREYHMKELSDGVRTF 61
           LRRAGK+GEFVSVFVNEKQ CVYIASDGGRVCRPLVIADKG+SRI+E+HMKEL DGVRTF
Sbjct: 558 LRRAGKVGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRTF 617

Query: 62  DDFLRDGLIEYLDVNEENNALIALYEGEATPETTHIEIEPLTILGVVAGLIPYPHHNQSP 121
           DDFL DGLIEYLDVNEENNALIALYEGEATPETTHIEIEP TILGV+AGLIPYPHHNQSP
Sbjct: 618 DDFLSDGLIEYLDVNEENNALIALYEGEATPETTHIEIEPFTILGVIAGLIPYPHHNQSP 677

Query: 122 RNTYQCAMGKQAMGNIAYNQASIFFSIIDCKPQLFIY 159
           RNTYQCAMGKQAMGNIAYNQAS       C+    +Y
Sbjct: 678 RNTYQCAMGKQAMGNIAYNQASRIIQYSLCRMDTLLY 714

[Close]
BLAST of MELO3C024453 vs. TrEMBL
Match: A0A068TTD5_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00022765001 PE=3 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 4.1e-72
Identity = 134/142 (94.37%), Postives = 138/142 (97.18%), Query Frame = 1 

Query: 2   LRRAGKIGEFVSVFVNEKQHCVYIASDGGRVCRPLVIADKGVSRIREYHMKELSDGVRTF 61
           LRRAGKIGEFVS+FVNEKQHCVYIASDGGRVCRPLVIADKGVSRI+E+HMKEL DGVRTF
Sbjct: 569 LRRAGKIGEFVSIFVNEKQHCVYIASDGGRVCRPLVIADKGVSRIKEHHMKELKDGVRTF 628

Query: 62  DDFLRDGLIEYLDVNEENNALIALYEGEATPETTHIEIEPLTILGVVAGLIPYPHHNQSP 121
           D FLR+GLIEYLDVNEENNALIALYEGEATPETTHIEIEP TILGV AGLIPYPHHNQSP
Sbjct: 629 DSFLREGLIEYLDVNEENNALIALYEGEATPETTHIEIEPFTILGVCAGLIPYPHHNQSP 688

Query: 122 RNTYQCAMGKQAMGNIAYNQAS 144
           RNTYQCAMGKQAMGNIAYNQAS
Sbjct: 689 RNTYQCAMGKQAMGNIAYNQAS 710

[Close]
BLAST of MELO3C024453 vs. TrEMBL
Match: A0A061FXT3_THECC (DNA-directed RNA polymerase subunit beta OS=Theobroma cacao GN=TCM_044750 PE=3 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 3.5e-71
Identity = 133/140 (95.00%), Postives = 136/140 (97.14%), Query Frame = 1 

Query: 2   LRRAGKIGEFVSVFVNEKQHCVYIASDGGRVCRPLVIADKGVSRIREYHMKELSDGVRTF 61
           LRRAGK+GEFVSVFVNEKQ CVYIASDGGRVCRPLVIADKGVSRI+E+HMKEL DGVRTF
Sbjct: 579 LRRAGKVGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGVSRIKEHHMKELLDGVRTF 638

Query: 62  DDFLRDGLIEYLDVNEENNALIALYEGEATPETTHIEIEPLTILGVVAGLIPYPHHNQSP 121
           DDFLRDGLIEYLDVNEENNALIALYEGEATPETTHIEIEP TILGV AGLIPYPHHNQSP
Sbjct: 639 DDFLRDGLIEYLDVNEENNALIALYEGEATPETTHIEIEPFTILGVCAGLIPYPHHNQSP 698

Query: 122 RNTYQCAMGKQAMGNIAYNQ 142
           RNTYQCAMGKQAMGNIAYNQ
Sbjct: 699 RNTYQCAMGKQAMGNIAYNQ 718

[Close]
BLAST of MELO3C024453 vs. TrEMBL
Match: A0A061FQM7_THECC (DNA-directed RNA polymerase subunit beta OS=Theobroma cacao GN=TCM_044750 PE=3 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 3.5e-71
Identity = 133/140 (95.00%), Postives = 136/140 (97.14%), Query Frame = 1 

Query: 2   LRRAGKIGEFVSVFVNEKQHCVYIASDGGRVCRPLVIADKGVSRIREYHMKELSDGVRTF 61
           LRRAGK+GEFVSVFVNEKQ CVYIASDGGRVCRPLVIADKGVSRI+E+HMKEL DGVRTF
Sbjct: 480 LRRAGKVGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGVSRIKEHHMKELLDGVRTF 539

Query: 62  DDFLRDGLIEYLDVNEENNALIALYEGEATPETTHIEIEPLTILGVVAGLIPYPHHNQSP 121
           DDFLRDGLIEYLDVNEENNALIALYEGEATPETTHIEIEP TILGV AGLIPYPHHNQSP
Sbjct: 540 DDFLRDGLIEYLDVNEENNALIALYEGEATPETTHIEIEPFTILGVCAGLIPYPHHNQSP 599

Query: 122 RNTYQCAMGKQAMGNIAYNQ 142
           RNTYQCAMGKQAMGNIAYNQ
Sbjct: 600 RNTYQCAMGKQAMGNIAYNQ 619

[Close]
BLAST of MELO3C024453 vs. TrEMBL
Match: A0A061FXS8_THECC (DNA-directed RNA polymerase subunit beta OS=Theobroma cacao GN=TCM_044750 PE=3 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 3.5e-71
Identity = 133/140 (95.00%), Postives = 136/140 (97.14%), Query Frame = 1 

Query: 2   LRRAGKIGEFVSVFVNEKQHCVYIASDGGRVCRPLVIADKGVSRIREYHMKELSDGVRTF 61
           LRRAGK+GEFVSVFVNEKQ CVYIASDGGRVCRPLVIADKGVSRI+E+HMKEL DGVRTF
Sbjct: 579 LRRAGKVGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGVSRIKEHHMKELLDGVRTF 638

Query: 62  DDFLRDGLIEYLDVNEENNALIALYEGEATPETTHIEIEPLTILGVVAGLIPYPHHNQSP 121
           DDFLRDGLIEYLDVNEENNALIALYEGEATPETTHIEIEP TILGV AGLIPYPHHNQSP
Sbjct: 639 DDFLRDGLIEYLDVNEENNALIALYEGEATPETTHIEIEPFTILGVCAGLIPYPHHNQSP 698

Query: 122 RNTYQCAMGKQAMGNIAYNQ 142
           RNTYQCAMGKQAMGNIAYNQ
Sbjct: 699 RNTYQCAMGKQAMGNIAYNQ 718

[Close]
BLAST of MELO3C024453 vs. TAIR10
Match: AT5G45140.1 (AT5G45140.1 nuclear RNA polymerase C2)

HSP 1 Score: 257.3 bits (656), Expect = 6.5e-69
Identity = 125/151 (82.78%), Postives = 131/151 (86.75%), Query Frame = 1 

Query: 2   LRRAGKIGEFVSVFVNEKQHCVYIASDGGRVCRPLVIADKGVSRIREYHMKELSDGVRTF 61
           LRRAGKIGEFVSVF NEKQHCVY+ASD GRVCRPLVIADKG+SR++++HMKEL DGVRTF
Sbjct: 573 LRRAGKIGEFVSVFTNEKQHCVYVASDVGRVCRPLVIADKGISRVKQHHMKELQDGVRTF 632

Query: 62  DDFLRDGLIEYLDVNEENNALIALYEGEATPE-----------TTHIEIEPLTILGVVAG 121
           DDF+RDGLIEYLDVNEENNALIALYE + T E           TTHIEIEP TILGVVAG
Sbjct: 633 DDFIRDGLIEYLDVNEENNALIALYESDGTTELDEGAEAAKADTTHIEIEPFTILGVVAG 692

Query: 122 LIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQ 142
           LIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQ
Sbjct: 693 LIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQ 723

[Close]
BLAST of MELO3C024453 vs. TAIR10
Match: AT4G21710.1 (AT4G21710.1 DNA-directed RNA polymerase family protein)

HSP 1 Score: 89.0 bits (219), Expect = 3.0e-18
Identity = 59/149 (39.60%), Postives = 73/149 (48.99%), Query Frame = 1 

Query: 2   LRRAGKIGEFVSVFVNEKQHCVYIASDGGRVCRPLVIADKGVSRIREYHMKELSDGVRTF 61
           LRR   +   V V  + +   + I +D GR  RPL I D     I++  +  L       
Sbjct: 594 LRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVDNQKLLIKKRDIYALQQRESAE 653

Query: 62  DD----FLRDGLIEYLDVNEENNALIA-----LYEGEATPET------THIEIEPLTILG 121
           +D     +  G IEY+D  EE   +I+     L +    PE       TH EI P  ILG
Sbjct: 654 EDGWHHLVAKGFIEYIDTEEEETTMISMTISDLVQARLRPEEAYTENYTHCEIHPSLILG 713

Query: 122 VVAGLIPYPHHNQSPRNTYQCAMGKQAMG 136
           V A +IP+P HNQSPRNTYQ AMGKQAMG
Sbjct: 714 VCASIIPFPDHNQSPRNTYQSAMGKQAMG 742

[Close]
BLAST of MELO3C024453 vs. TAIR10
Match: AT1G29940.1 (AT1G29940.1 nuclear RNA polymerase A2)

HSP 1 Score: 54.7 bits (130), Expect = 6.4e-08
Identity = 27/52 (51.92%), Postives = 31/52 (59.62%), Query Frame = 1 

Query: 95  THIEIEPLTILGVVAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQASIFF 147
           TH EI P  ++ VVA L P+  HNQSPRN YQC M KQ M   AY+  ++ F
Sbjct: 675 THEEIHPTGMISVVANLTPWSDHNQSPRNMYQCQMAKQTM---AYSTQALQF 723

[Close]
BLAST of MELO3C024453 vs. NCBI nr
Match: gi|659124980|ref|XP_008462447.1| (PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Cucumis melo])

HSP 1 Score: 290.0 bits (741), Expect = 2.6e-75
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 1 

Query: 1   MLRRAGKIGEFVSVFVNEKQHCVYIASDGGRVCRPLVIADKGVSRIREYHMKELSDGVRT 60
           MLRRAGKIGEFVSVFVNEKQHCVYIASDGGRVCRPLVIADKGVSRIREYHMKELSDGVRT
Sbjct: 580 MLRRAGKIGEFVSVFVNEKQHCVYIASDGGRVCRPLVIADKGVSRIREYHMKELSDGVRT 639

Query: 61  FDDFLRDGLIEYLDVNEENNALIALYEGEATPETTHIEIEPLTILGVVAGLIPYPHHNQS 120
           FDDFLRDGLIEYLDVNEENNALIALYEGEATPETTHIEIEPLTILGVVAGLIPYPHHNQS
Sbjct: 640 FDDFLRDGLIEYLDVNEENNALIALYEGEATPETTHIEIEPLTILGVVAGLIPYPHHNQS 699

Query: 121 PRNTYQCAMGKQAMGNIAYNQ 142
           PRNTYQCAMGKQAMGNIAYNQ
Sbjct: 700 PRNTYQCAMGKQAMGNIAYNQ 720

[Close]
BLAST of MELO3C024453 vs. NCBI nr
Match: gi|778730035|ref|XP_004141655.2| (PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Cucumis sativus])

HSP 1 Score: 287.3 bits (734), Expect = 1.7e-74
Identity = 139/141 (98.58%), Postives = 140/141 (99.29%), Query Frame = 1 

Query: 1   MLRRAGKIGEFVSVFVNEKQHCVYIASDGGRVCRPLVIADKGVSRIREYHMKELSDGVRT 60
           MLRRAGKIGEFVSVFVNEKQHCVYIASDGGRVCRPLVIADKGVSRI+EYHMKELSDGVRT
Sbjct: 580 MLRRAGKIGEFVSVFVNEKQHCVYIASDGGRVCRPLVIADKGVSRIKEYHMKELSDGVRT 639

Query: 61  FDDFLRDGLIEYLDVNEENNALIALYEGEATPETTHIEIEPLTILGVVAGLIPYPHHNQS 120
           FDDFLRDGLIEYLDVNEENNALIALYEGEATPETTHIEIEP TILGVVAGLIPYPHHNQS
Sbjct: 640 FDDFLRDGLIEYLDVNEENNALIALYEGEATPETTHIEIEPFTILGVVAGLIPYPHHNQS 699

Query: 121 PRNTYQCAMGKQAMGNIAYNQ 142
           PRNTYQCAMGKQAMGNIAYNQ
Sbjct: 700 PRNTYQCAMGKQAMGNIAYNQ 720

[Close]
BLAST of MELO3C024453 vs. NCBI nr
Match: gi|728809070|gb|KHF98728.1| (DNA-directed RNA polymerase III subunit RPC2 [Gossypium arboreum])

HSP 1 Score: 280.4 bits (716), Expect = 2.0e-72
Identity = 135/157 (85.99%), Postives = 142/157 (90.45%), Query Frame = 1 

Query: 2   LRRAGKIGEFVSVFVNEKQHCVYIASDGGRVCRPLVIADKGVSRIREYHMKELSDGVRTF 61
           LRRAGK+GEFVSVFVNEKQ CVYIASDGGRVCRPLVIADKG+SRI+E+HMKEL DGVRTF
Sbjct: 558 LRRAGKVGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRTF 617

Query: 62  DDFLRDGLIEYLDVNEENNALIALYEGEATPETTHIEIEPLTILGVVAGLIPYPHHNQSP 121
           DDFL DGLIEYLDVNEENNALIALYEGEATPETTHIEIEP TILGV+AGLIPYPHHNQSP
Sbjct: 618 DDFLSDGLIEYLDVNEENNALIALYEGEATPETTHIEIEPFTILGVIAGLIPYPHHNQSP 677

Query: 122 RNTYQCAMGKQAMGNIAYNQASIFFSIIDCKPQLFIY 159
           RNTYQCAMGKQAMGNIAYNQAS       C+    +Y
Sbjct: 678 RNTYQCAMGKQAMGNIAYNQASRIIQYSLCRMDTLLY 714

[Close]
BLAST of MELO3C024453 vs. NCBI nr
Match: gi|661898641|emb|CDO98608.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 278.9 bits (712), Expect = 5.9e-72
Identity = 134/142 (94.37%), Postives = 138/142 (97.18%), Query Frame = 1 

Query: 2   LRRAGKIGEFVSVFVNEKQHCVYIASDGGRVCRPLVIADKGVSRIREYHMKELSDGVRTF 61
           LRRAGKIGEFVS+FVNEKQHCVYIASDGGRVCRPLVIADKGVSRI+E+HMKEL DGVRTF
Sbjct: 569 LRRAGKIGEFVSIFVNEKQHCVYIASDGGRVCRPLVIADKGVSRIKEHHMKELKDGVRTF 628

Query: 62  DDFLRDGLIEYLDVNEENNALIALYEGEATPETTHIEIEPLTILGVVAGLIPYPHHNQSP 121
           D FLR+GLIEYLDVNEENNALIALYEGEATPETTHIEIEP TILGV AGLIPYPHHNQSP
Sbjct: 629 DSFLREGLIEYLDVNEENNALIALYEGEATPETTHIEIEPFTILGVCAGLIPYPHHNQSP 688

Query: 122 RNTYQCAMGKQAMGNIAYNQAS 144
           RNTYQCAMGKQAMGNIAYNQAS
Sbjct: 689 RNTYQCAMGKQAMGNIAYNQAS 710

[Close]
BLAST of MELO3C024453 vs. NCBI nr
Match: gi|590568479|ref|XP_007010805.1| (DNA-directed RNA polymerase isoform 7 [Theobroma cacao])

HSP 1 Score: 275.8 bits (704), Expect = 5.0e-71
Identity = 133/140 (95.00%), Postives = 136/140 (97.14%), Query Frame = 1 

Query: 2   LRRAGKIGEFVSVFVNEKQHCVYIASDGGRVCRPLVIADKGVSRIREYHMKELSDGVRTF 61
           LRRAGK+GEFVSVFVNEKQ CVYIASDGGRVCRPLVIADKGVSRI+E+HMKEL DGVRTF
Sbjct: 480 LRRAGKVGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGVSRIKEHHMKELLDGVRTF 539

Query: 62  DDFLRDGLIEYLDVNEENNALIALYEGEATPETTHIEIEPLTILGVVAGLIPYPHHNQSP 121
           DDFLRDGLIEYLDVNEENNALIALYEGEATPETTHIEIEP TILGV AGLIPYPHHNQSP
Sbjct: 540 DDFLRDGLIEYLDVNEENNALIALYEGEATPETTHIEIEPFTILGVCAGLIPYPHHNQSP 599

Query: 122 RNTYQCAMGKQAMGNIAYNQ 142
           RNTYQCAMGKQAMGNIAYNQ
Sbjct: 600 RNTYQCAMGKQAMGNIAYNQ 619

The following BLAST results are available for this feature:
BLAST of MELO3C024453 vs. Swiss-Prot
Match NameE-valueIdentityDescription
NRPC2_ARATH1.1e-6782.78DNA-directed RNA polymerase III subunit 2 OS=Arabidopsis thaliana GN=NRPC2 PE=2 ... [more]
RPC2_YEAST4.0e-5262.42DNA-directed RNA polymerase III subunit RPC2 OS=Saccharomyces cerevisiae (strain... [more]
RPC2_SCHPO7.5e-5162.86DNA-directed RNA polymerase III subunit RPC2 OS=Schizosaccharomyces pombe (strai... [more]
RPC2_MOUSE3.1e-4964.54DNA-directed RNA polymerase III subunit RPC2 OS=Mus musculus GN=Polr3b PE=1 SV=2[more]
RPC2_HUMAN3.1e-4964.54DNA-directed RNA polymerase III subunit RPC2 OS=Homo sapiens GN=POLR3B PE=1 SV=2[more]
BLAST of MELO3C024453 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0B0MH19_GOSAR1.4e-7285.99DNA-directed RNA polymerase subunit beta OS=Gossypium arboreum GN=F383_10055 PE=... [more]
A0A068TTD5_COFCA4.1e-7294.37Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00022765001 PE=3 SV=1[more]
A0A061FXT3_THECC3.5e-7195.00DNA-directed RNA polymerase subunit beta OS=Theobroma cacao GN=TCM_044750 PE=3 S... [more]
A0A061FQM7_THECC3.5e-7195.00DNA-directed RNA polymerase subunit beta OS=Theobroma cacao GN=TCM_044750 PE=3 S... [more]
A0A061FXS8_THECC3.5e-7195.00DNA-directed RNA polymerase subunit beta OS=Theobroma cacao GN=TCM_044750 PE=3 S... [more]
BLAST of MELO3C024453 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G45140.16.5e-6982.78 nuclear RNA polymerase C2[more]
AT4G21710.13.0e-1839.60 DNA-directed RNA polymerase family protein[more]
AT1G29940.16.4e-0851.92 nuclear RNA polymerase A2[more]
BLAST of MELO3C024453 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659124980|ref|XP_008462447.1|2.6e-75100.00PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Cucumis melo][more]
gi|778730035|ref|XP_004141655.2|1.7e-7498.58PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Cucumis sativus][more]
gi|728809070|gb|KHF98728.1|2.0e-7285.99DNA-directed RNA polymerase III subunit RPC2 [Gossypium arboreum][more]
gi|661898641|emb|CDO98608.1|5.9e-7294.37unnamed protein product [Coffea canephora][more]
gi|590568479|ref|XP_007010805.1|5.0e-7195.00DNA-directed RNA polymerase isoform 7 [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007120DNA-dir_RNAP_su2_dom
IPR007646RNA_pol_Rpb2_4
IPR007647RNA_pol_Rpb2_5
IPR015712DNA-dir_RNA_pol_su2
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003899DNA-directed RNA polymerase activity
GO:0032549ribonucleoside binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0005730 nucleolus
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
molecular_function GO:0003899 DNA-directed RNA polymerase activity
molecular_function GO:0032549 ribonucleoside binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C024453T1MELO3C024453T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007120DNA-directed RNA polymerase, subunit 2, domain 6PFAMPF00562RNA_pol_Rpb2_6coord: 108..142
score: 5.
IPR007646RNA polymerase Rpb2, domain 4PFAMPF04566RNA_pol_Rpb2_4coord: 2..38
score: 6.3
IPR007647RNA polymerase Rpb2, domain 5PFAMPF04567RNA_pol_Rpb2_5coord: 61..101
score: 1.2
IPR015712DNA-directed RNA polymerase, subunit 2PANTHERPTHR20856DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2coord: 1..141
score: 4.9E
NoneNo IPR availableGENE3DG3DSA:3.90.1100.10coord: 84..144
score: 2.7
NoneNo IPR availablePANTHERPTHR20856:SF8DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC2coord: 1..141
score: 4.9E
NoneNo IPR availableunknownSSF64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 2..143
score: 7.02

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C024453CSPI07G23460Wild cucumber (PI 183967)cpimeB525
MELO3C024453CsGy7G021710Cucumber (Gy14) v2cgybmeB457
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C024453Silver-seed gourdcarmeB0995
MELO3C024453Cucumber (Chinese Long) v3cucmeB537
MELO3C024453Watermelon (97103) v2mewmbB222
MELO3C024453Wax gourdmewgoB257
MELO3C024453Cucumber (Gy14) v1cgymeB579
MELO3C024453Cucurbita maxima (Rimu)cmameB319
MELO3C024453Cucurbita moschata (Rifu)cmomeB312
MELO3C024453Cucumber (Chinese Long) v2cumeB521
MELO3C024453Watermelon (Charleston Gray)mewcgB174
MELO3C024453Watermelon (97103) v1mewmB183
MELO3C024453Cucurbita pepo (Zucchini)cpemeB117
MELO3C024453Bottle gourd (USVL1VR-Ls)lsimeB185