MELO3C024125 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C024125
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionHelicase/SANT-associated, DNA binding protein
Locationchr1 : 9704807 .. 9705214 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAGCAAAAGCAAGAAATTGGACTTCCCTACTCCCAACCTTAATTGCTCACATGTATCAAATGAGGATCGTAATCTAAGACCATTGGCTAGAAACGTATGTCCCTTAGAGTTGGGAAACGATAGAGGTGGATTAGGTAGTATTGACAATGAAGAGTTTGTGGACGATAGTGGCCATGAAAGTGACATTGAATTCAAAGGTGATGATGATGTTCATGGCCTTCATATGTTTGATTCAAATGCCCAACTACATTATGAAGTTAATATCGACAATGAGCACGAAATTTTGAAAAGTGACAAGGATGAGTCACCTCATTTAATTACCAAGAAAAAACAAAAGCGTGTGGAAAAGTTAATGGGATGCACAGTTTTCCTATTAGCCGAGTCATACCTAGAAGACGTTCAG

mRNA sequence

ATGGTGAGCAAAAGCAAGAAATTGGACTTCCCTACTCCCAACCTTAATTGCTCACATGTATCAAATGAGGATCGTAATCTAAGACCATTGGCTAGAAACGTATGTCCCTTAGAGTTGGGAAACGATAGAGGTGGATTAGGTAGTATTGACAATGAAGAGTTTGTGGACGATAGTGGCCATGAAAGTGACATTGAATTCAAAGGTGATGATGATGTTCATGGCCTTCATATGTTTGATTCAAATGCCCAACTACATTATGAAGTTAATATCGACAATGAGCACGAAATTTTGAAAAGTGACAAGGATGAGTCACCTCATTTAATTACCAAGAAAAAACAAAAGCGTGTGGAAAAGTTAATGGGATGCACAGTTTTCCTATTAGCCGAGTCATACCTAGAAGACGTTCAG

Coding sequence (CDS)

ATGGTGAGCAAAAGCAAGAAATTGGACTTCCCTACTCCCAACCTTAATTGCTCACATGTATCAAATGAGGATCGTAATCTAAGACCATTGGCTAGAAACGTATGTCCCTTAGAGTTGGGAAACGATAGAGGTGGATTAGGTAGTATTGACAATGAAGAGTTTGTGGACGATAGTGGCCATGAAAGTGACATTGAATTCAAAGGTGATGATGATGTTCATGGCCTTCATATGTTTGATTCAAATGCCCAACTACATTATGAAGTTAATATCGACAATGAGCACGAAATTTTGAAAAGTGACAAGGATGAGTCACCTCATTTAATTACCAAGAAAAAACAAAAGCGTGTGGAAAAGTTAATGGGATGCACAGTTTTCCTATTAGCCGAGTCATACCTAGAAGACGTTCAG

Protein sequence

MVSKSKKLDFPTPNLNCSHVSNEDRNLRPLARNVCPLELGNDRGGLGSIDNEEFVDDSGHESDIEFKGDDDVHGLHMFDSNAQLHYEVNIDNEHEILKSDKDESPHLITKKKQKRVEKLMGCTVFLLAESYLEDVQ
Homology
[Close]
BLAST of MELO3C024125 vs. TrEMBL
Match: A0A0A0K393_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G206960 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-06
Identity = 44/132 (33.33%), Postives = 63/132 (47.73%), Query Frame = 1 

Query: 1   MVSKSKKLDFPTPNLNCSHVSNEDRNLRPLARNVCPLELGNDRGGLGSIDNEEFVDDSGH 60
           M S++KK + P PNL CSHVS E   L  L  N               IDN E V++ GH
Sbjct: 1   MASETKKPNSPNPNLKCSHVSTEVHELSLLTAN------------WQCIDNYELVNNFGH 60

Query: 61  ESDIEFKGDDDVHGLH--------------------MFDSNAQLHYEVNIDNEHEILKSD 113
           +S IE +GDD+  GLH                    M +++AQ+H+E  +  E   ++SD
Sbjct: 61  DSGIEHRGDDENIGLHMDLEVELGGDYKNLDLRGVDMSEADAQVHHE-ELPLEEGAVESD 119

[Close]
BLAST of MELO3C024125 vs. NCBI nr
Match: gi|700188912|gb|KGN44145.1| (hypothetical protein Csa_7G206960 [Cucumis sativus])

HSP 1 Score: 61.2 bits (147), Expect = 1.6e-06
Identity = 44/132 (33.33%), Postives = 63/132 (47.73%), Query Frame = 1 

Query: 1   MVSKSKKLDFPTPNLNCSHVSNEDRNLRPLARNVCPLELGNDRGGLGSIDNEEFVDDSGH 60
           M S++KK + P PNL CSHVS E   L  L  N               IDN E V++ GH
Sbjct: 1   MASETKKPNSPNPNLKCSHVSTEVHELSLLTAN------------WQCIDNYELVNNFGH 60

Query: 61  ESDIEFKGDDDVHGLH--------------------MFDSNAQLHYEVNIDNEHEILKSD 113
           +S IE +GDD+  GLH                    M +++AQ+H+E  +  E   ++SD
Sbjct: 61  DSGIEHRGDDENIGLHMDLEVELGGDYKNLDLRGVDMSEADAQVHHE-ELPLEEGAVESD 119

The following BLAST results are available for this feature:
BLAST of MELO3C024125 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K393_CUCSA1.1e-0633.33Uncharacterized protein OS=Cucumis sativus GN=Csa_7G206960 PE=4 SV=1[more]
BLAST of MELO3C024125 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700188912|gb|KGN44145.1|1.6e-0633.33hypothetical protein Csa_7G206960 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C024125T1MELO3C024125T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C024125Cucumber (Chinese Long) v2cumeB524