MELO3C024121 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C024121
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	50S ribosomal protein l21
Location	chr1 : 9575381 .. 9580629 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTAAAACAAACGCGCACACACACACACAACACAAGACCTTCAGCAGGTCTCTCTAATGGCGTCTCTTACTCTTTCCCTCTGCGCCAATTTCTCTCTTCAATGCCGACTCTCCACCAACCATAGTCTACCTTTATCCACCCCGTTTCCCTCTTCTAGTTCCAACCATCATTTCCCCCTTTCCACTTCATCATCTTCCCTCAAGCTCTCTTCTTCCCGCTCTGCATTCTCCTTCCTCCTCAACTCCTCCGACTCTGAAACCGCCGTAATCGACTCTGACCCTGACGCTTCTCAAGCCCTTGAAATCCCCTCCCAACAGACCCCCAACCGCGAGGAAATCTTTGCGGTTGTTATGGTTAGTGTTTAATTTCACTGCTTTCCTTCTGTATTTGGCTAAAATGCTGGACTTCGGTATTGCGGAGTCATCGTTTATAATATGCTTAATTCCATTGCTGCCTGTATGTGTGTGTATATGTGAATTTGTTTCCAAACAGATTGGATCCCGCCAATATATAGTCTTTCCAGGGCGTTATATTCATACCCAGAGGCTGAAAGGGGCTAACGTCAATGATAAGGTGGGTTTTCTTATTATTCCATTCGTTTTATATTTTGATTATTTGAGTTGCTTGCTGAATTATGTTATACTTATGGAGATCAGAGTATGCATGCTTTGTTTGAATTTTTAGGTAGCACTAACATACTGTGCTCAACAGTGACTTGCATTGTTGTTTCTCTTTATGTACTTGGCAACTTCTTTCCGAATAGTTACCTAAGAAGTAAAAAAGTGATAGAGTTTTAGAAATTGATTGGGAGACTTTAGAGTTTAGATATTATTCGAGTAAAAGTGCCATCGTCTGTTCTCATGGTTACTCTTGTCAAAGTAATTGAGTTTCCATTTTTCATTTTGGTATTAATTCGTTTGGCGGTCTTCCTAAGTTAGAACCATCAGACAATATTAATATAATTTTTTTTAGAAAACTGCGGTTGGAATTTAAAAGAGAATAATGATTAGAGTCTGAAAACAAGAGATATAGAACAACTCTGTTATGGTATCTTTCTACTTTATACTAATTACTTGTACCATTATGGATATGTCTCCATCACCAAGGTCGGCCACTGTTGGATAAATTTAGGTCTTTTATGGTCCTAAGCTTGCTTTTGCTAGTGAAAATTGGTTTCAACACAAAATTTAATATAGAGCTTGCGTATCTAGCATGCTTAAATAGATTTTAGATATTTTGAGCAATATGCCTATTATCAAACATTTGACTTATCCAAGAGGGGTTTGAGATCTGGATGTCTCGACCAACTGCATAAAAGTGATGGCTTGAGAATTTGAAGGTGTGCGTGCGTCTGCTTTATATTATTTTGTGAATGATGTTGCTGCTTGGCTTAGCATGCTATTCAATAGGACATCAAGGGGAAAAAGTGTAAGTTGGCAAGAACATATCCTGTGGAAAGATACTTGGGTATGAACCTCTTCCTAGAAAATTCCCCCTTGATCTTCGATCTTCGATCTTTCTCTAAAAATGGATGGGGCTCCGGCATTGCGAAAGAATTTTGGAATTCAAATGTTGGATCCTGGAATTTGAGGTTTAGAACAAGCTAGAGAGATGCGGAAATTGAAGAATATCGAGCCCATCTACACTGCCTCTTTATAACATAATTTGAACATAAAGTCGAGTTCTTTCTCTGAGAGCTCTCACACAAGGCTATAAATACTTAAGATAAGCTCCAGTTTTCTGAGAATGGCCCATATGATTTTGTCTTCACATTGTTGTACACTCTACCATTAACAACTTTCTGAATCACAGAATCATCTTTTACTATCACGTGTTTTTGCAAAGACCAATTGGAACTATCTCTTCTCATCCTTCAACTGGCAAACAGTTCTCCCTTAAGACCCAAGGCGTTCACGCCTTAGGAGAGAGCCTTCTGCGGGCTCATTGGGCTAGAAAGAAATACAAGAGTCTTCCAAGATAAGGATTTCTCTTACTCTAGATTTTTTTGTCCTATAGTTAACCCAGTTGTGATTCGGTGTAAATGCTCCCTCCTTCATCACTATAGCTTTTCCATCCTCCTTTCTAATGGTAGGGATCTTTTGTAGCTCTCCCTTTTGAGATCTCCCTTTTGAGATTTTCCTCTCTTGTAGTTTCATACAATCGTGAAATTGTTTCTCATCCATACAAATAAAAGTAAAATAATAAAAAGAGAATAAATTAGAACTAGTGAATGTTGTTAAGTTTGGTAGAAATTTTGAGAATTGAGATAATTTAGATAAGTCATTCATGAGTAGTGGTGCTAGAGCTTGGTCTTGGGGCAGTGTCTTAAGTCAAAACAATTTGACAGGAGTGTCTTTACAGCCTAATTTTCTTTTCCTTTATATTTCATCAAATAATAATAATAACAACAATAATGTATTATTATGAAAAAAAAATAAATAAAAAAAAACCTTTAGAAGAAGATGGGTTCCTTTTATATGATTCTGTTACAGATTTCATGAATCATGGGTGTTTTTCAGTTTTCTTTCAATTAGTTCTTTATGATCAATTGACTATGAATCTCAACACTTATCTCTTATTCTTTTTGATACAAAGAGTTTGTCTTTTCTCTTACTCCATCGATTTTTGCACGTTCGTTCATTGACTCTCAAGTCATCCAACCATCCTTGTGATTTTCCTTAGCTCATCTGTTGATCCTTTATTTATTTTTGCCAACATGAGTATAACTCTACTGGCTTGTACCGAACTAAGGTTTGATCCCCCACCACACATATTTGTTGATCTTTTTCTATCTCCTGGTCTTCATTTCTTCATGGAGGCTAAAATCTCATAGAAACTTTGGTTTTTTCCTAGTGTCCAAAGTTGTTAAGTGTATGGTTTTGAGACCCTGCTTGTGTATGTCATACAATAAGGTTAGCCTAAGATTTGGATTGTGTTCTATGAAGGTGTCACTCCACGATAAAAGTTTGGAATATGTTTCTTGAGAAAATTTTGCATTGGTTTGGTTTCTTAAGACTTTATTGCTATATAATAAGGGAACGTGCTCGCTAATCCTCCTTTGCGTAGCATAAAAGTGGGTGGGTTTCTTTGATAGCAGGAGGTCGTGTTTTTCTTTGGGTATTTCACTACAATTTTACAGTTTTTTGGGGGGTACTTGGCTTGTTTTTCTTTTTCTATTCTTAAAAGAGACAGATTCATTTAATAGAGAAATTAAGAATAAGATATATTACAAGTTATTGTTCAAAGCACTTTAATGGGGAAAAATAATGTTTTCTGGGTAATTACTAAAGGAGTTGGAAAGAATACACTCCAATATGGAACTGAAGAAACTGCCCTATTCTAAAAAGTACCTGTAGAAAGTTCGATCTCCTGAAAATTATTATATTTCTACCTAACTACATCCTTTTTTTTTTTTAAAGTACAACTTGGGGGTAAGGGGAATTGAACCTGGGGCCTCTTGTCCTTGGAAATATACATGTGTCAGTTAAGCTAAGCTCATATTGGCAACCTAACTACATCTTGAATAGTCTTCACCGCATTGTTATCAAATTCTGCTTTACCCCTTTTAGCAAAGTCCCTCAAAGGTGTCCTATAGTTTCTTTGATGTTCTTTGGGAGGCACCAGCGGATGTTAAAGATTTGGAATAAAACATTGGACATTTTGCCGGTTGGAAGTAGATTCGCAACTGAGGAAGGGATGATCACAAATTCACAACAATTTCATATTTCTTTTTGCATAAAATGTATCAATTGAGAAATAAGTAAATGCTATAACGTGACCTTTTTACTTTGCCATTAATATTGGTTCCTTCCATTGTGATCAAAGGCAGAACATGTTAACGATGTTTTTCTAATTCAGCTTCGAGGGAGATTTTCCTATATATTTTTTTCATAACAGAGTTTACTGTCGATCCAGCTGCTAGAGAAAGGTCGTGAAGTTATTAATATTTTCGCATCTTCCATCCTCTTTTTTTAAATAGCATTTTCTTGGTGGCAATGGGGAGTAATCCATTCTTCTATGTCACCTTTCAGGAGATTTCTTCTGAATTTCACTTTTAAGAGCTTGAACAAGCAATGTATCAAAAGAAGAAATGAGCTTTAGAAATTTGACGAGATTATGGTACCTTATCTATTGACCAAAATTTATGTGAAAGCCTGCACATACGCATTTACCTAAGTTGTGAATATTGATTTAGGTTGTAGTGTTTAGATTCAGCATTGATTAGCTTGATGACTAACGATCATCAGGCTTATTGCGTAGTAGCAGATCTTGTCTCATCTAATGTATGTGCAATTCATTTTGTAATACGGTGATTGTCTTAAATTTTTCTAATTTTTTTTTTTTGTTTTTTGCAGATAACTCTGAACAAGGTTTTGCTCGTGGGAACAAAAACTCAGACATACATTGGAAAACCAGTAGTTACAAATGCCGCCGTTCATGCTGTTGTTGAGGAGCAGGTAATGCATCAAATTCGTTATCATCCCTTCATCAGAATAGAAAGAGGAAGAAGACCAAAGGAATAGAACAATGCTTCTTTTTTGCTTGGATTGTCTTCTTGTTTTTGTTTCTCTCCCTAAGTGGTCATTTGTTTCTCTTAATCAGGGATTAGATGACAAGGTAATTGTCTTCAAGTACAAGAAAAAGAAAAACTACCGACGAAACATTGGGCACCGTCAGGTATTTTTCGGTCTTAGCCGCTCACTTCTCACTACCATTGTTTTACCACACAAATTTGCAGTATGTTGGGATTAGCCTTCATACCTCTCTCTCCCTGATGTGCATAAGTTTAGGAAAATTATTTGAATCCACGTTTGTCTATGTAGTTTCTAAACCTCCTCTTTTTTTGGAATATGTTTCTTCATCTGTTTTTACCCATATGATGCAGCCCAATACGCGAATTAGGATAACTGAAATCTCTGGATATCAAGATTACCCAGCAACCACGCTCGAGTCGTAGGAACAAATTCCGATGCTTTGAAGTTCCCTATTTCTTGCTCAAAATTCCCCTTTTTTGTATGTAAGTTCTTGTGATTTAAAATGTTTCAGTTGAGTTGTTTCTATCTGATAATGAATCTCAGAAGATCCTCCGGTGACCATTATGTCAAAATTTGAAGGAAATATATTGCTAATATGGAGTCCTAGGAATGTACTAATTTGTAGCTTAATATTAAAGGGTATCCAAAACTTAGTGGGCATATTTGAAATATGGTAAAGAATCAATTGTCTTTTATTTAAGTGTCACAAAA

mRNA sequence

ATGGCTAAAACAAACGCGCACACACACACACAACACAAGACCTTCAGCAGGTCTCTCTAATGGCGTCTCTTACTCTTTCCCTCTGCGCCAATTTCTCTCTTCAATGCCGACTCTCCACCAACCATAGTCTACCTTTATCCACCCCGTTTCCCTCTTCTAGTTCCAACCATCATTTCCCCCTTTCCACTTCATCATCTTCCCTCAAGCTCTCTTCTTCCCGCTCTGCATTCTCCTTCCTCCTCAACTCCTCCGACTCTGAAACCGCCGTAATCGACTCTGACCCTGACGCTTCTCAAGCCCTTGAAATCCCCTCCCAACAGACCCCCAACCGCGAGGAAATCTTTGCGGTTGTTATGATTGGATCCCGCCAATATATAGTCTTTCCAGGGCGTTATATTCATACCCAGAGGCTGAAAGGGGCTAACGTCAATGATAAGATAACTCTGAACAAGGTTTTGCTCGTGGGAACAAAAACTCAGACATACATTGGAAAACCAGTAGTTACAAATGCCGCCGTTCATGCTGTTGTTGAGGAGCAGGGATTAGATGACAAGGTAATTGTCTTCAAGTACAAGAAAAAGAAAAACTACCGACGAAACATTGGGCACCGTCAGCCCAATACGCGAATTAGGATAACTGAAATCTCTGGATATCAAGATTACCCAGCAACCACGCTCGAGTCGTAGGAACAAATTCCGATGCTTTGAAGTTCCCTATTTCTTGCTCAAAATTCCCCTTTTTTGTATGTAAGTTCTTGTGATTTAAAATGTTTCAGTTGAGTTGTTTCTATCTGATAATGAATCTCAGAAGATCCTCCGGTGACCATTATGTCAAAATTTGAAGGAAATATATTGCTAATATGGAGTCCTAGGAATGTACTAATTTGTAGCTTAATATTAAAGGGTATCCAAAACTTAGTGGGCATATTTGAAATATGGTAAAGAATCAATTGTCTTTTATTTAAGTGTCACAAAA

Coding sequence (CDS)

ATGGCGTCTCTTACTCTTTCCCTCTGCGCCAATTTCTCTCTTCAATGCCGACTCTCCACCAACCATAGTCTACCTTTATCCACCCCGTTTCCCTCTTCTAGTTCCAACCATCATTTCCCCCTTTCCACTTCATCATCTTCCCTCAAGCTCTCTTCTTCCCGCTCTGCATTCTCCTTCCTCCTCAACTCCTCCGACTCTGAAACCGCCGTAATCGACTCTGACCCTGACGCTTCTCAAGCCCTTGAAATCCCCTCCCAACAGACCCCCAACCGCGAGGAAATCTTTGCGGTTGTTATGATTGGATCCCGCCAATATATAGTCTTTCCAGGGCGTTATATTCATACCCAGAGGCTGAAAGGGGCTAACGTCAATGATAAGATAACTCTGAACAAGGTTTTGCTCGTGGGAACAAAAACTCAGACATACATTGGAAAACCAGTAGTTACAAATGCCGCCGTTCATGCTGTTGTTGAGGAGCAGGGATTAGATGACAAGGTAATTGTCTTCAAGTACAAGAAAAAGAAAAACTACCGACGAAACATTGGGCACCGTCAGCCCAATACGCGAATTAGGATAACTGAAATCTCTGGATATCAAGATTACCCAGCAACCACGCTCGAGTCGTAG

Protein sequence

MASLTLSLCANFSLQCRLSTNHSLPLSTPFPSSSSNHHFPLSTSSSSLKLSSSRSAFSFLLNSSDSETAVIDSDPDASQALEIPSQQTPNREEIFAVVMIGSRQYIVFPGRYIHTQRLKGANVNDKITLNKVLLVGTKTQTYIGKPVVTNAAVHAVVEEQGLDDKVIVFKYKKKKNYRRNIGHRQPNTRIRITEISGYQDYPATTLES*

Homology

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BLAST of MELO3C024121 vs. Swiss-Prot
Match: RK21_ARATH (50S ribosomal protein L21, chloroplastic OS=Arabidopsis thaliana GN=RPL21 PE=2 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 3.0e-57
Identity = 116/210 (55.24%), Postives = 148/210 (70.48%), Query Frame = 1


Query: 2   ASLTLSLCANFSLQCRLSTNHSLPLSTPFPSSSSNHHFPLSTSSSSLKLSSSRSAFSFLL 61
           +S TLSLC+ FS  C +++  S  +       S N   PL+   S    S+SR+AF+   
Sbjct: 4   SSATLSLCSTFSAHCNVNSRRSSTILCSLSKPSLNLAKPLTGFLSPSTASTSRTAFTVAP 63

Query: 62  NSSDSETAVIDSDPDASQALEIP-------SQQTPNREEIFAVVMIGSRQYIVFPGRYIH 121
             ++S   V++++P+ +    +        +++   REEIFAV+M+G RQYIVFPGRY++
Sbjct: 64  KFAES---VVEAEPETTDIEAVVVSDVSEVTEEKAKREEIFAVIMVGGRQYIVFPGRYLY 123

Query: 122 TQRLKGANVNDKITLNKVLLVGTKTQTYIGKPVVTNAAVHAVVEEQGLDDKVIVFKYKKK 181
           TQRLK ANV+D+I LNKVLLVGTKT TYIGKPVVTNA VHAVVE QGL+DKV+VFKYK K
Sbjct: 124 TQRLKDANVDDQIVLNKVLLVGTKTHTYIGKPVVTNATVHAVVESQGLNDKVVVFKYKPK 183

Query: 182 KNYRRNIGHRQPNTRIRITEISGYQDYPAT 205
           K YRRNIGHRQPNTRIRIT I+GY++YPA+
Sbjct: 184 KKYRRNIGHRQPNTRIRITGITGYEEYPAS 210

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BLAST of MELO3C024121 vs. Swiss-Prot
Match: RK21_SPIOL (50S ribosomal protein L21, chloroplastic OS=Spinacia oleracea GN=RPL21 PE=1 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 2.9e-52
Identity = 129/237 (54.43%), Postives = 148/237 (62.45%), Query Frame = 1


Query: 1   MASLTL-----SLCANFSLQCRLSTN--HSLPLSTPF------PSSSSNHHFPLSTSSSS 60
           MAS TL     SLCA   L   L+    +  PLS PF      PS S     P++     
Sbjct: 1   MASATLAFSCSSLCATLKLPQNLNPLLLNVPPLSKPFSGVVSPPSLSRLSLLPVAAKRRR 60

Query: 61  LKL--SSSRSAFSFLLNSSDSETAVIDSDPDASQALE-------------IPSQ-QTPNR 120
            +      ++ F       + +  + D  PD  QA E             +P +   P R
Sbjct: 61  FQEIPEELKAEFEEFQRPPNQKPQLSDVLPDDFQAPEPGTPEYNDIINQFLPKKGPPPPR 120

Query: 121 EEIFAVVMIGSRQYIVFPGRYIHTQRLKGANVNDKITLNKVLLVGTKTQTYIGKPVVTNA 180
           EEIFAVV+IGSRQYIV PGR+I+TQRLKGA VNDKI LNKVLLVGTK  TYIG P+VTNA
Sbjct: 121 EEIFAVVVIGSRQYIVIPGRWIYTQRLKGATVNDKIVLNKVLLVGTKASTYIGTPIVTNA 180

Query: 181 AVHAVVEEQGLDDKVIVFKYKKKKNYRRNIGHRQPNTRIRITEISGYQDYPATTLES 209
           AVHAVVEEQ LDDKVIVFKYKKKKNYRRNIGHRQP TRI+IT I+GY+DYPA+TLE+
Sbjct: 181 AVHAVVEEQLLDDKVIVFKYKKKKNYRRNIGHRQPITRIKITGITGYEDYPASTLEA 237

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BLAST of MELO3C024121 vs. Swiss-Prot
Match: RM21_ARATH (50S ribosomal protein L21, mitochondrial OS=Arabidopsis thaliana GN=RPL21M PE=2 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 2.5e-27
Identity = 58/108 (53.70%), Postives = 80/108 (74.07%), Query Frame = 1


Query: 92  EEIFAVVMIGSRQYIVFPGRYIHTQRLKGANVNDKITLNKVLLVGTKTQTYIGKPVVTNA 151
           E +FA+V IGS Q+ V  G  I T++LK  ++NDK+ L KVLL+G+ +QT IG+P++ +A
Sbjct: 138 EPVFAIVQIGSHQFKVSNGDSIFTEKLKFCDINDKLELTKVLLLGSASQTIIGRPILPDA 197

Query: 152 AVHAVVEEQGLDDKVIVFKYKKKKNYRRNIGHRQPNTRIRITEISGYQ 200
            VHAVVEE  LD+KV++FK K++KNYRR  GHRQ  T++RIT+I G +
Sbjct: 198 TVHAVVEEHALDEKVLIFKKKRRKNYRRTRGHRQELTKLRITDIQGIE 245

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BLAST of MELO3C024121 vs. Swiss-Prot
Match: RM21_DICDI (Probable 39S ribosomal protein L21, mitochondrial OS=Dictyostelium discoideum GN=mrpl21 PE=3 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 3.9e-20
Identity = 65/168 (38.69%), Postives = 94/168 (55.95%), Query Frame = 1


Query: 41  LSTSSSSLKLSSSRSAFSFLLN---SSDSETAVIDSDPDASQALEIPSQQTPNREEIFAV 100
           L  SSSS+ L + +   + LL    +S  E   + S+    ++    +Q TP  ++ FAV
Sbjct: 9   LMKSSSSILLRNQQQQTNKLLFRNFTSIPEAVAVTSE----ESYNSKNQFTPIGKDSFAV 68

Query: 101 VMIGSRQYIVFPGRYIHTQRLKGANVNDKITLNKVLLVGTKTQTYIGKPVVTNAAVHAVV 160
           V I  +QY V  G  I T +++  +V + I L+KVLLVGTK +T IGKP+++N  VHA +
Sbjct: 69  VHISGKQYKVIEGDIIMTDKIQ-VDVGEHIVLDKVLLVGTKNETIIGKPIISNFKVHAYI 128

Query: 161 EEQGLDDKVIVFKYKKKKNYRRNIGHRQPNTRIRITEISGYQDYPATT 206
           EEQ   + V +FK+K +KNY+R  G +   T IRI  I   Q+   TT
Sbjct: 129 EEQAKTEHVTIFKHKPRKNYKRTTGFQGLATYIRIGGIIKGQETTTTT 171

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BLAST of MELO3C024121 vs. Swiss-Prot
Match: RL21_DICTD (50S ribosomal protein L21 OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=rplU PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.6e-18
Identity = 51/102 (50.00%), Postives = 66/102 (64.71%), Query Frame = 1


Query: 94  IFAVVMIGSRQYIVFPGRYIHTQRLKGANVNDKITLNKVLLVGTKTQTYIGKPVVTNAAV 153
           +F VV  G +QY V  G  ++ ++LK ANV D++ L+KVLLVG + +  IG+P V  A V
Sbjct: 1   MFVVVETGGKQYKVSVGSMVNVEKLK-ANVGDEVVLDKVLLVGKEDEVIIGQPYVEGAKV 60

Query: 154 HAVVEEQGLDDKVIVFKYKKKKNYRRNIGHRQPNTRIRITEI 196
            A V  Q    KVIVFK+K+KK+YRR  GHRQP T++ I EI
Sbjct: 61  IAKVVRQDKYPKVIVFKFKRKKHYRRKYGHRQPYTQLSIKEI 101

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BLAST of MELO3C024121 vs. TrEMBL
Match: M5VZR4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011231mg PE=3 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 1.5e-66
Identity = 144/223 (64.57%), Postives = 165/223 (73.99%), Query Frame = 1


Query: 2   ASLTLSLCANFSLQCRLSTNHSLPLST-PFPSSSSNHHFPLSTSSSSLKLSSSRSAFSFL 61
           AS TLSLC+ F+  C++S N   P S   F S SS+     S+SS  L  SSSR  F  L
Sbjct: 3   ASATLSLCSLFATHCKISQNLQTPSSNVSFLSLSSS-----SSSSHKLSSSSSRPTFPLL 62

Query: 62  LNSSDSETAVI---------------DSDPDASQALEIPSQQTPNREEIFAVVMIGSRQY 121
             S+++E+AV+               D++P A Q +E PS  +P RE++F VVMIG RQY
Sbjct: 63  TKSAEAESAVVVEAEFQASESEAKPDDTEPAALQVVETPS--SPKREQLFGVVMIGGRQY 122

Query: 122 IVFPGRYIHTQRLKGANVNDKITLNKVLLVGTKTQTYIGKPVVTNAAVHAVVEEQGLDDK 181
           IV PGRYI+TQRLKGANVNDKI LNKVLLVGTKT TYIGKPVVTNAAVHAVVEEQGL+DK
Sbjct: 123 IVIPGRYIYTQRLKGANVNDKIVLNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLNDK 182

Query: 182 VIVFKYKKKKNYRRNIGHRQPNTRIRITEISGYQDYPATTLES 209
           V+VFKYKKKKNYRRNIGHRQPNTRIRIT I+GYQDYPA TLES
Sbjct: 183 VVVFKYKKKKNYRRNIGHRQPNTRIRITGITGYQDYPAVTLES 218

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BLAST of MELO3C024121 vs. TrEMBL
Match: E5GCJ5_CUCME (50S ribosomal protein l21 OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 1.5e-63
Identity = 127/129 (98.45%), Postives = 128/129 (99.22%), Query Frame = 1


Query: 1   MASLTLSLCANFSLQCRLSTNHSLPLSTPFPSSSSNHHFPLSTSSSSLKLSSSRSAFSFL 60
           MASLTLSLCANFSLQCRLSTNHSLPLSTPFPSSSSNHHFPLSTSSSSLKLSSSRSAFSFL
Sbjct: 1   MASLTLSLCANFSLQCRLSTNHSLPLSTPFPSSSSNHHFPLSTSSSSLKLSSSRSAFSFL 60

Query: 61  LNSSDSETAVIDSDPDASQALEIPSQQTPNREEIFAVVMIGSRQYIVFPGRYIHTQRLKG 120
           LNSSDSETAVIDSDPDASQALEIPSQQTPNREEIFAVVMIGSRQYIVFPGRYIHTQRLKG
Sbjct: 61  LNSSDSETAVIDSDPDASQALEIPSQQTPNREEIFAVVMIGSRQYIVFPGRYIHTQRLKG 120

Query: 121 ANVNDKITL 130
           ANVNDK+ L
Sbjct: 121 ANVNDKVAL 129

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BLAST of MELO3C024121 vs. TrEMBL
Match: A0A061FJI7_THECC (50S ribosomal protein L21 isoform 1 OS=Theobroma cacao GN=TCM_036366 PE=3 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 4.4e-63
Identity = 138/224 (61.61%), Postives = 163/224 (72.77%), Query Frame = 1


Query: 2   ASLTLSLCANFSLQCRLSTN----HSL---PLSTPFPSSSSNHHFPLSTSSSSLKLSSSR 61
           A  TL+LC++F+  C++S +    +SL   P  TPF S S+   F L+ S     L S  
Sbjct: 6   AHATLALCSSFATHCKISNHPHHQNSLLFSPSKTPFFSLSNPFSFRLTPSP----LLSKT 65

Query: 62  SAFSFLLNSSDSETAVIDSDPDASQALEIPSQQT----------PNREEIFAVVMIGSRQ 121
             F  +  SS+S+  V++++PD  Q+   P+ +           P REEIFAVVMIGSRQ
Sbjct: 66  PTFCTIPKSSESDAGVVETEPDNIQSEPEPAPEPAEVVEAAKDKPKREEIFAVVMIGSRQ 125

Query: 122 YIVFPGRYIHTQRLKGANVNDKITLNKVLLVGTKTQTYIGKPVVTNAAVHAVVEEQGLDD 181
           YIVFPGRYI+TQRLKGANVND+I LNKVLLVGTKT TYIGKPVVTNAAVHAVVEEQGL+ 
Sbjct: 126 YIVFPGRYIYTQRLKGANVNDEIVLNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLNP 185

Query: 182 KVIVFKYKKKKNYRRNIGHRQPNTRIRITEISGYQDYPATTLES 209
           KV+VFKYKKKKNYRRNIGHRQPNTRIRIT I+GYQDYPA TL S
Sbjct: 186 KVVVFKYKKKKNYRRNIGHRQPNTRIRITGITGYQDYPAVTLNS 225

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BLAST of MELO3C024121 vs. TrEMBL
Match: A0A0B0NNX2_GOSAR (50S ribosomal L21, chloroplastic-like protein OS=Gossypium arboreum GN=F383_01345 PE=3 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 3.7e-62
Identity = 135/222 (60.81%), Postives = 159/222 (71.62%), Query Frame = 1


Query: 5   TLSLCANFSLQCRLSTNH--SLPLSTPFPSSSSNHHFPLSTSSSSLKLSSSRSAFSFLLN 64
           TL L ++F+ QC +S  H  S  LS+P  +   +   P+S   +S  + S    F  +  
Sbjct: 9   TLVLSSSFATQCNVSNRHHQSCFLSSPPKTPIFSIPKPVSLKLTSPPILSKTPTFFTIPK 68

Query: 65  SSDSETAVIDSDPD----------------ASQALEIPSQQTPNREEIFAVVMIGSRQYI 124
           SS+S+ AV+D +PD                 S ++   S++ P REEIFAVVMIG RQYI
Sbjct: 69  SSESDAAVVDVEPDNVEPEPEPEAAPEPEPESASVVEASKEEPKREEIFAVVMIGGRQYI 128

Query: 125 VFPGRYIHTQRLKGANVNDKITLNKVLLVGTKTQTYIGKPVVTNAAVHAVVEEQGLDDKV 184
           VFPGRY++TQRLKGANVNDKI LNKVLLVGTKT TYIGKPVVTNAAVHAVVEEQGL+ KV
Sbjct: 129 VFPGRYLYTQRLKGANVNDKIVLNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLNPKV 188

Query: 185 IVFKYKKKKNYRRNIGHRQPNTRIRITEISGYQDYPATTLES 209
           +VFKYKKKKNYRRNIGHRQPNTRIRIT I+GYQDYPA TLES
Sbjct: 189 VVFKYKKKKNYRRNIGHRQPNTRIRITGITGYQDYPAVTLES 230

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BLAST of MELO3C024121 vs. TrEMBL
Match: A0A0D2TX02_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G290100 PE=3 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 3.1e-61
Identity = 131/220 (59.55%), Postives = 149/220 (67.73%), Query Frame = 1


Query: 5   TLSLCANFSLQCRLSTNHSLPLSTPFPSSSSNHHFPLSTSSSSLKLSSSRSAFSFLLNSS 64
           TL L ++F+ QC ++  H        P        P   S     L S    F  +  SS
Sbjct: 9   TLVLSSSFATQCNVANRHHQSCFLSSPPKIPIFSIPKPVSLKLTSLLSKTPTFFTIPKSS 68

Query: 65  DSETAVIDSDPDASQALEIP----------------SQQTPNREEIFAVVMIGSRQYIVF 124
           +S+ AV+D +PD  +    P                S++ P REEIFAVVMIG RQYIVF
Sbjct: 69  ESDAAVVDVEPDNVEPEPEPEAAPEPEPEPASVVEASKEEPKREEIFAVVMIGGRQYIVF 128

Query: 125 PGRYIHTQRLKGANVNDKITLNKVLLVGTKTQTYIGKPVVTNAAVHAVVEEQGLDDKVIV 184
           PGRY++TQRLKGANVNDKI LNKVLLVGTKT TYIGKPVVTNAAVHAVVEEQGL+ KV+V
Sbjct: 129 PGRYLYTQRLKGANVNDKIVLNKVLLVGTKTTTYIGKPVVTNAAVHAVVEEQGLNPKVVV 188

Query: 185 FKYKKKKNYRRNIGHRQPNTRIRITEISGYQDYPATTLES 209
           FKYKKKKNYRRNIGHRQPNTRIRIT I+GYQDYPA TLES
Sbjct: 189 FKYKKKKNYRRNIGHRQPNTRIRITGITGYQDYPAVTLES 228

[Close]

BLAST of MELO3C024121 vs. TAIR10
Match: AT1G35680.1 (AT1G35680.1 Ribosomal protein L21)

HSP 1 Score: 223.0 bits (567), Expect = 1.7e-58
Identity = 116/210 (55.24%), Postives = 148/210 (70.48%), Query Frame = 1


Query: 2   ASLTLSLCANFSLQCRLSTNHSLPLSTPFPSSSSNHHFPLSTSSSSLKLSSSRSAFSFLL 61
           +S TLSLC+ FS  C +++  S  +       S N   PL+   S    S+SR+AF+   
Sbjct: 4   SSATLSLCSTFSAHCNVNSRRSSTILCSLSKPSLNLAKPLTGFLSPSTASTSRTAFTVAP 63

Query: 62  NSSDSETAVIDSDPDASQALEIP-------SQQTPNREEIFAVVMIGSRQYIVFPGRYIH 121
             ++S   V++++P+ +    +        +++   REEIFAV+M+G RQYIVFPGRY++
Sbjct: 64  KFAES---VVEAEPETTDIEAVVVSDVSEVTEEKAKREEIFAVIMVGGRQYIVFPGRYLY 123

Query: 122 TQRLKGANVNDKITLNKVLLVGTKTQTYIGKPVVTNAAVHAVVEEQGLDDKVIVFKYKKK 181
           TQRLK ANV+D+I LNKVLLVGTKT TYIGKPVVTNA VHAVVE QGL+DKV+VFKYK K
Sbjct: 124 TQRLKDANVDDQIVLNKVLLVGTKTHTYIGKPVVTNATVHAVVESQGLNDKVVVFKYKPK 183

Query: 182 KNYRRNIGHRQPNTRIRITEISGYQDYPAT 205
           K YRRNIGHRQPNTRIRIT I+GY++YPA+
Sbjct: 184 KKYRRNIGHRQPNTRIRITGITGYEEYPAS 210

[Close]

BLAST of MELO3C024121 vs. TAIR10
Match: AT4G30930.1 (AT4G30930.1 Ribosomal protein L21)

HSP 1 Score: 123.6 bits (309), Expect = 1.4e-28
Identity = 58/108 (53.70%), Postives = 80/108 (74.07%), Query Frame = 1


Query: 92  EEIFAVVMIGSRQYIVFPGRYIHTQRLKGANVNDKITLNKVLLVGTKTQTYIGKPVVTNA 151
           E +FA+V IGS Q+ V  G  I T++LK  ++NDK+ L KVLL+G+ +QT IG+P++ +A
Sbjct: 138 EPVFAIVQIGSHQFKVSNGDSIFTEKLKFCDINDKLELTKVLLLGSASQTIIGRPILPDA 197

Query: 152 AVHAVVEEQGLDDKVIVFKYKKKKNYRRNIGHRQPNTRIRITEISGYQ 200
            VHAVVEE  LD+KV++FK K++KNYRR  GHRQ  T++RIT+I G +
Sbjct: 198 TVHAVVEEHALDEKVLIFKKKRRKNYRRTRGHRQELTKLRITDIQGIE 245

[Close]

BLAST of MELO3C024121 vs. NCBI nr
Match: gi|659124042|ref|XP_008461961.1| (PREDICTED: 50S ribosomal protein L21, chloroplastic [Cucumis melo])

HSP 1 Score: 409.5 bits (1051), Expect = 3.6e-111
Identity = 208/208 (100.00%), Postives = 208/208 (100.00%), Query Frame = 1


Query: 1   MASLTLSLCANFSLQCRLSTNHSLPLSTPFPSSSSNHHFPLSTSSSSLKLSSSRSAFSFL 60
           MASLTLSLCANFSLQCRLSTNHSLPLSTPFPSSSSNHHFPLSTSSSSLKLSSSRSAFSFL
Sbjct: 1   MASLTLSLCANFSLQCRLSTNHSLPLSTPFPSSSSNHHFPLSTSSSSLKLSSSRSAFSFL 60

Query: 61  LNSSDSETAVIDSDPDASQALEIPSQQTPNREEIFAVVMIGSRQYIVFPGRYIHTQRLKG 120
           LNSSDSETAVIDSDPDASQALEIPSQQTPNREEIFAVVMIGSRQYIVFPGRYIHTQRLKG
Sbjct: 61  LNSSDSETAVIDSDPDASQALEIPSQQTPNREEIFAVVMIGSRQYIVFPGRYIHTQRLKG 120

Query: 121 ANVNDKITLNKVLLVGTKTQTYIGKPVVTNAAVHAVVEEQGLDDKVIVFKYKKKKNYRRN 180
           ANVNDKITLNKVLLVGTKTQTYIGKPVVTNAAVHAVVEEQGLDDKVIVFKYKKKKNYRRN
Sbjct: 121 ANVNDKITLNKVLLVGTKTQTYIGKPVVTNAAVHAVVEEQGLDDKVIVFKYKKKKNYRRN 180

Query: 181 IGHRQPNTRIRITEISGYQDYPATTLES 209
           IGHRQPNTRIRITEISGYQDYPATTLES
Sbjct: 181 IGHRQPNTRIRITEISGYQDYPATTLES 208

[Close]

BLAST of MELO3C024121 vs. NCBI nr
Match: gi|449463382|ref|XP_004149413.1| (PREDICTED: 50S ribosomal protein L21, chloroplastic [Cucumis sativus])

HSP 1 Score: 380.9 bits (977), Expect = 1.4e-102
Identity = 195/208 (93.75%), Postives = 200/208 (96.15%), Query Frame = 1


Query: 1   MASLTLSLCANFSLQCRLSTNHSLPLSTPFPSSSSNHHFPLSTSSSSLKLSSSRSAFSFL 60
           MASLTLSLCANFSLQCRLSTNH+LPLSTPFPSS+SNHHFPLSTS SSLKLSSSR +FSFL
Sbjct: 1   MASLTLSLCANFSLQCRLSTNHNLPLSTPFPSSNSNHHFPLSTSPSSLKLSSSRPSFSFL 60

Query: 61  LNSSDSETAVIDSDPDASQALEIPSQQTPNREEIFAVVMIGSRQYIVFPGRYIHTQRLKG 120
           LNSSDSETA+IDSDP  SQ LEIPS   PNREEIFAVVMIGSRQYIVFPGRYIHTQRLKG
Sbjct: 61  LNSSDSETALIDSDPADSQTLEIPSP--PNREEIFAVVMIGSRQYIVFPGRYIHTQRLKG 120

Query: 121 ANVNDKITLNKVLLVGTKTQTYIGKPVVTNAAVHAVVEEQGLDDKVIVFKYKKKKNYRRN 180
           A+VNDKITLNKVLLVGTKTQTYIGKPVVTNAAVHAVVEEQGLDDKVIVFKYKKKKNYRRN
Sbjct: 121 ADVNDKITLNKVLLVGTKTQTYIGKPVVTNAAVHAVVEEQGLDDKVIVFKYKKKKNYRRN 180

Query: 181 IGHRQPNTRIRITEISGYQDYPATTLES 209
           IGHRQPNTRIRITEISGYQDYPATTLES
Sbjct: 181 IGHRQPNTRIRITEISGYQDYPATTLES 206

[Close]

BLAST of MELO3C024121 vs. NCBI nr
Match: gi|694329220|ref|XP_009355379.1| (PREDICTED: 50S ribosomal protein L21, chloroplastic-like [Pyrus x bretschneideri])

HSP 1 Score: 265.8 bits (678), Expect = 6.5e-68
Identity = 144/225 (64.00%), Postives = 168/225 (74.67%), Query Frame = 1


Query: 2   ASLTLSLCANFSLQCRLSTNHSLPLSTPFPSSSSNHHFPLSTSSSSLKLSSS---RSAFS 61
           A+ TLSLC++F+ +C++S N    L TP    S+   FP  + SSS KLSS    R  F 
Sbjct: 5   ATATLSLCSSFATRCKISQN----LQTP----STYFSFPSLSLSSSHKLSSCSSRRPTFP 64

Query: 62  FLLNSSDSETAVI---------------DSDPDASQALEIPSQQTPNREEIFAVVMIGSR 121
            L  SS+S++AV+               DS+P A Q +E PS + P RE++FAVVMIG R
Sbjct: 65  LLTKSSESDSAVVVEAEFQAPEPEAGPADSEPAALQVVETPSSEAPKREQLFAVVMIGGR 124

Query: 122 QYIVFPGRYIHTQRLKGANVNDKITLNKVLLVGTKTQTYIGKPVVTNAAVHAVVEEQGLD 181
           QYIV PGR+I+TQRLKGANVNDKI LNKVLLVGTKT TYIGKPVVTNAAVHAVVEEQGL+
Sbjct: 125 QYIVIPGRFIYTQRLKGANVNDKIVLNKVLLVGTKTSTYIGKPVVTNAAVHAVVEEQGLN 184

Query: 182 DKVIVFKYKKKKNYRRNIGHRQPNTRIRITEISGYQDYPATTLES 209
           DKV+VFKYKKKKNYRRNIGHRQPNTRIRIT ++GYQDYPA TLES
Sbjct: 185 DKVVVFKYKKKKNYRRNIGHRQPNTRIRITAVTGYQDYPAVTLES 221

[Close]

BLAST of MELO3C024121 vs. NCBI nr
Match: gi|1009157499|ref|XP_015896791.1| (PREDICTED: 50S ribosomal protein L21, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 265.8 bits (678), Expect = 6.5e-68
Identity = 142/225 (63.11%), Postives = 169/225 (75.11%), Query Frame = 1


Query: 1   MASLTLSLCANFSLQCRLSTNHSLPLSTPFPS----SSSNHHFPLSTSSSSLKLSSSRSA 60
           MAS TLSLC++ +L CR+S+  S       P+    S S++  PLS++     ++S R  
Sbjct: 1   MASATLSLCSSLALNCRISSQKSQNPLLFNPNLTFLSLSSYKLPLSSA-----IASQRPT 60

Query: 61  FSFLLNSSDSETAVIDS-------------DPDASQALEIPSQQTPNREEIFAVVMIGSR 120
           F FL  SS+S+TA++++             +P ASQ +E  S+  P REE+FAVVMIGSR
Sbjct: 61  FPFLSKSSESDTAIVEAAETNVTPVPEAAPEPAASQTVEATSEPAPKREEVFAVVMIGSR 120

Query: 121 QYIVFPGRYIHTQRLKGANVNDKITLNKVLLVGTKTQTYIGKPVVTNAAVHAVVEEQGLD 180
           QYIVFPGRY+ TQRLKGANVNDKI LNKVLLVGTKT TYIGKPVVTNAAVHAVVE+QGLD
Sbjct: 121 QYIVFPGRYLSTQRLKGANVNDKIVLNKVLLVGTKTSTYIGKPVVTNAAVHAVVEDQGLD 180

Query: 181 DKVIVFKYKKKKNYRRNIGHRQPNTRIRITEISGYQDYPATTLES 209
            KV+VFKYKKKKNYRRNIGHRQPNTRIRIT I+GYQDYPA TL+S
Sbjct: 181 SKVVVFKYKKKKNYRRNIGHRQPNTRIRITGITGYQDYPAVTLDS 220

[Close]

BLAST of MELO3C024121 vs. NCBI nr
Match: gi|694427497|ref|XP_009341376.1| (PREDICTED: 50S ribosomal protein L21, chloroplastic-like [Pyrus x bretschneideri])

HSP 1 Score: 263.1 bits (671), Expect = 4.2e-67
Identity = 142/225 (63.11%), Postives = 167/225 (74.22%), Query Frame = 1


Query: 2   ASLTLSLCANFSLQCRLSTNHSLPLSTPFPSSSSNHHFPLSTSSSSLKLSSS---RSAFS 61
           A+ T+SLC+ F+  C++S N    L TP    +++  F   +SSSS KLSS    R  F 
Sbjct: 5   ATATISLCSTFATHCKISQN----LQTP----ATHFSFRSLSSSSSHKLSSCSLRRPTFP 64

Query: 62  FLLNSSDSETAVI---------------DSDPDASQALEIPSQQTPNREEIFAVVMIGSR 121
            L+ SS+S++AV+               DS+P A Q +E PS + P RE++F VVMIG R
Sbjct: 65  LLIKSSESDSAVVVEAEFQAPEPEAGPDDSEPAALQVVETPSSEAPKREQLFGVVMIGGR 124

Query: 122 QYIVFPGRYIHTQRLKGANVNDKITLNKVLLVGTKTQTYIGKPVVTNAAVHAVVEEQGLD 181
           QYIV PGR+I+TQRLKGANVNDKI LNKVLLVGTKT TYIGKPVVTNAAVHAVVEEQGL+
Sbjct: 125 QYIVIPGRFIYTQRLKGANVNDKIVLNKVLLVGTKTSTYIGKPVVTNAAVHAVVEEQGLN 184

Query: 182 DKVIVFKYKKKKNYRRNIGHRQPNTRIRITEISGYQDYPATTLES 209
           DKV+VFKYKKKKNYRRNIGHRQPNTRIRIT I+GYQDYPA TLES
Sbjct: 185 DKVVVFKYKKKKNYRRNIGHRQPNTRIRITAITGYQDYPAVTLES 221

The following BLAST results are available for this feature:

BLAST of MELO3C024121 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RK21_ARATH	3.0e-57	55.24	50S ribosomal protein L21, chloroplastic OS=Arabidopsis thaliana GN=RPL21 PE=2 S...	[more]
RK21_SPIOL	2.9e-52	54.43	50S ribosomal protein L21, chloroplastic OS=Spinacia oleracea GN=RPL21 PE=1 SV=1	[more]
RM21_ARATH	2.5e-27	53.70	50S ribosomal protein L21, mitochondrial OS=Arabidopsis thaliana GN=RPL21M PE=2 ...	[more]
RM21_DICDI	3.9e-20	38.69	Probable 39S ribosomal protein L21, mitochondrial OS=Dictyostelium discoideum GN...	[more]
RL21_DICTD	1.6e-18	50.00	50S ribosomal protein L21 OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN...	[more]

BLAST of MELO3C024121 vs. TrEMBL


Match Name	E-value	Identity	Description
M5VZR4_PRUPE	1.5e-66	64.57	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011231mg PE=3 SV=1	[more]
E5GCJ5_CUCME	1.5e-63	98.45	50S ribosomal protein l21 OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A061FJI7_THECC	4.4e-63	61.61	50S ribosomal protein L21 isoform 1 OS=Theobroma cacao GN=TCM_036366 PE=3 SV=1	[more]
A0A0B0NNX2_GOSAR	3.7e-62	60.81	50S ribosomal L21, chloroplastic-like protein OS=Gossypium arboreum GN=F383_0134...	[more]
A0A0D2TX02_GOSRA	3.1e-61	59.55	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G290100 PE=3 SV=1	[more]

BLAST of MELO3C024121 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G35680.1	1.7e-58	55.24	Ribosomal protein L21	[more]
AT4G30930.1	1.4e-28	53.70	Ribosomal protein L21	[more]

BLAST of MELO3C024121 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659124042\|ref\|XP_008461961.1\|	3.6e-111	100.00	PREDICTED: 50S ribosomal protein L21, chloroplastic [Cucumis melo]	[more]
gi\|449463382\|ref\|XP_004149413.1\|	1.4e-102	93.75	PREDICTED: 50S ribosomal protein L21, chloroplastic [Cucumis sativus]	[more]
gi\|694329220\|ref\|XP_009355379.1\|	6.5e-68	64.00	PREDICTED: 50S ribosomal protein L21, chloroplastic-like [Pyrus x bretschneideri...	[more]
gi\|1009157499\|ref\|XP_015896791.1\|	6.5e-68	63.11	PREDICTED: 50S ribosomal protein L21, chloroplastic [Ziziphus jujuba]	[more]
gi\|694427497\|ref\|XP_009341376.1\|	4.2e-67	63.11	PREDICTED: 50S ribosomal protein L21, chloroplastic-like [Pyrus x bretschneideri...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001787	Ribosomal_L21
IPR018258	Ribosomal_L21_CS

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009902	chloroplast relocation
biological_process	GO:0006412	translation
biological_process	GO:0044699	single-organism process
biological_process	GO:0009657	plastid organization
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0042742	defense response to bacterium
biological_process	GO:0009409	response to cold
biological_process	GO:0042793	transcription from plastid promoter
biological_process	GO:0010027	thylakoid membrane organization
biological_process	GO:0006364	rRNA processing
biological_process	GO:0035304	regulation of protein dephosphorylation
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0009793	embryo development ending in seed dormancy
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
cellular_component	GO:0044434	chloroplast part
cellular_component	GO:0005762	mitochondrial large ribosomal subunit
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU47800	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C024121T1	MELO3C024121T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU47800	MU47800	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001787	Ribosomal protein L21	HAMAP	MF_01363	Ribosomal_L21	coord: 94..197 score: 22
IPR001787	Ribosomal protein L21	TIGRFAMs	TIGR00061	TIGR00061	coord: 95..196 score: 4.2
IPR018258	Ribosomal protein L21, conserved site	PROSITE	PS01169	RIBOSOMAL_L21	coord: 166..188 scor
None	No IPR available	PANTHER	PTHR21349	50S RIBOSOMAL PROTEIN L21	coord: 6..207 score: 9.1E
None	No IPR available	PANTHER	PTHR21349:SF2	50S RIBOSOMAL PROTEIN L21, CHLOROPLASTIC	coord: 6..207 score: 9.1E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C024121	Csa7G274150	Cucumber (Chinese Long) v2	cumeB524
MELO3C024121	Cla016347	Watermelon (97103) v1	mewmB196
MELO3C024121	Cla97C09G173300	Watermelon (97103) v2	mewmbB221
MELO3C024121	Bhi09G001349	Wax gourd	mewgoB251
MELO3C024121	CSPI07G11840	Wild cucumber (PI 183967)	cpimeB532
MELO3C024121	Cucsa.240670	Cucumber (Gy14) v1	cgymeB407
MELO3C024121	CmaCh01G009630	Cucurbita maxima (Rimu)	cmameB400
MELO3C024121	CmoCh01G010000	Cucurbita moschata (Rifu)	cmomeB391
MELO3C024121	Lsi02G019250	Bottle gourd (USVL1VR-Ls)	lsimeB200
MELO3C024121	Cp4.1LG01g16510	Cucurbita pepo (Zucchini)	cpemeB393
MELO3C024121	CsGy7G011030	Cucumber (Gy14) v2	cgybmeB465
MELO3C024121	CsaV3_7G023770	Cucumber (Chinese Long) v3	cucmeB545

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None