MELO3C024110.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C024110.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	At4g16447
Location	chr01 : 9840652 .. 9841433 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGAGCAAAACATTCTAATCCTAATATCTTATAAGTACACATTGATCTCCATAACTATGTACACTTCACATACTATAAGCAGCTGCAGCTTAAACTCCCCTTGAGAGTGTTCTCCAATGGGTAGGCACGATAGTGAACCTACCATGGTTGGTACCTCCATAGCTCTGTTACAAGAAAGATTTAGACAATTGCAGAAAAACAAGCAAAAAAGAGAGAGGAAGGAGCTTCTTAACCTGCTATTCGAATCAAATAGGGTCGATGCCTCGATAATGCATTTAGAACCAGAACCAAATGGCTCGTTGACCTCAAGAGTTTTGGATTCCAATTCCCTCTCCCTTGGTTTGAATTTGAAGCATAATGAGGGTAAGCAAGTTGATATTGATATCCATGAAGCCAGGTCGGTGCCAAGTGACACCAAGTTCGGGCCCGAAAACTCATTCATGGTGAGTACATTAAGAAGTTTCGATACAAATGTCGATACCACTCTTCATCTATAGATAATTTCTTCACCTAGTATTTCTGTTAGCTTTATTTGCTTGGTTCTCTCCCCACCTAAGAATGAAAAAACGTGTGTTGAATTGATATCTGATGTGATCAATATGCATTCTATTGATGATGTCCTAGACATTTTGTAAGATGTCTATTTGCTTGGTTAGTTTAGCTCCAGGAATGTGCATAATGAGAGAGAGAGAGAGGGAAGGAAGGGAAGTGATGGAAAAACAACTCTTAAGTGAGACCATGTCTTTTACCAATTCCATTATGTTTAAATCTCTCTCTTTGGG

mRNA sequence

AAGAGCAAAACATTCTAATCCTAATATCTTATAAGTACACATTGATCTCCATAACTATGTACACTTCACATACTATAAGCAGCTGCAGCTTAAACTCCCCTTGAGAGTGTTCTCCAATGGGTAGGCACGATAGTGAACCTACCATGGTTGGTACCTCCATAGCTCTGTTACAAGAAAGATTTAGACAATTGCAGAAAAACAAGCAAAAAAGAGAGAGGAAGGAGCTTCTTAACCTGCTATTCGAATCAAATAGGGTCGATGCCTCGATAATGCATTTAGAACCAGAACCAAATGGCTCGTTGACCTCAAGAGTTTTGGATTCCAATTCCCTCTCCCTTGGTTTGAATTTGAAGCATAATGAGGGTAAGCAAGTTGATATTGATATCCATGAAGCCAGGTCGGTGCCAAGTGACACCAAGTTCGGGCCCGAAAACTCATTCATGGTGAGTACATTAAGAAGTTTCGATACAAATGTCGATACCACTCTTCATCTATAGATAATTTCTTCACCTAGTATTTCTGTTAGCTTTATTTGCTTGGTTCTCTCCCCACCTAAGAATGAAAAAACGTGTGTTGAATTGATATCTGATGTGATCAATATGCATTCTATTGATGATGTCCTAGACATTTTGTAAGATGTCTATTTGCTTGGTTAGTTTAGCTCCAGGAATGTGCATAATGAGAGAGAGAGAGAGGGAAGGAAGGGAAGTGATGGAAAAACAACTCTTAAGTGAGACCATGTCTTTTACCAATTCCATTATGTTTAAATCTCTCTCTTTGGG

Coding sequence (CDS)

ATGGGTAGGCACGATAGTGAACCTACCATGGTTGGTACCTCCATAGCTCTGTTACAAGAAAGATTTAGACAATTGCAGAAAAACAAGCAAAAAAGAGAGAGGAAGGAGCTTCTTAACCTGCTATTCGAATCAAATAGGGTCGATGCCTCGATAATGCATTTAGAACCAGAACCAAATGGCTCGTTGACCTCAAGAGTTTTGGATTCCAATTCCCTCTCCCTTGGTTTGAATTTGAAGCATAATGAGGGTAAGCAAGTTGATATTGATATCCATGAAGCCAGGTCGGTGCCAAGTGACACCAAGTTCGGGCCCGAAAACTCATTCATGGTGAGTACATTAAGAAGTTTCGATACAAATGTCGATACCACTCTTCATCTATAG

Protein sequence

MGRHDSEPTMVGTSIALLQERFRQLQKNKQKRERKELLNLLFESNRVDASIMHLEPEPNGSLTSRVLDSNSLSLGLNLKHNEGKQVDIDIHEARSVPSDTKFGPENSFMVSTLRSFDTNVDTTLHL

Homology

[Close]

BLAST of MELO3C024110.2 vs. NCBI nr
Match: KGN44369.1 (hypothetical protein Csa_7G272125 [Cucumis sativus])

HSP 1 Score: 202.2 bits (513), Expect = 1.0e-48
Identity = 110/127 (86.61%), Postives = 116/127 (91.34%), Query Frame = 0


Query: 1   MGRHDSEPTMVGTSIALLQERFRQLQKNKQKRERKELLNLLFESNRVDASIMHLEPEPNG 60
           MGRH+SEPTMVGTSIALLQERFRQLQKNKQ+RERKELLNLLFESNRVDASIMHL  EPNG
Sbjct: 1   MGRHNSEPTMVGTSIALLQERFRQLQKNKQRRERKELLNLLFESNRVDASIMHL--EPNG 60

Query: 61  SLTSRVLDSNSLSLGLNLKHNEGKQVDIDIHEARSVPSDTKFGPENSFMVSTLRSFDT-N 120
           S TSR LDSNSLSLGLNL++N GKQVDIDIHEARS+P DTKF   NSFMVST RSFD+ N
Sbjct: 61  SSTSRDLDSNSLSLGLNLENNAGKQVDIDIHEARSMPGDTKFELGNSFMVSTFRSFDSPN 120

Query: 121 VDTTLHL 127
           VDTTLHL
Sbjct: 121 VDTTLHL 125

[Close]

BLAST of MELO3C024110.2 vs. NCBI nr
Match: XP_023916992.1 (uncharacterized protein LOC112028527 [Quercus suber] >POF04971.1 hypothetical protein CFP56_18427 [Quercus suber])

HSP 1 Score: 90.9 bits (224), Expect = 3.4e-15
Identity = 61/132 (46.21%), Postives = 83/132 (62.88%), Query Frame = 0


Query: 1   MGRHDSEPTMVGTSIALLQERFRQLQKNKQKRERKELLNLLFESNRVDASIMHLEP---- 60
           MGR  ++PTMV +SIALLQERFRQL+K K++RE KELLNL  E+ R+     H EP    
Sbjct: 1   MGRQSNDPTMVSSSIALLQERFRQLEKVKERREEKELLNLFAETERI-MPTTHFEPSKLS 60

Query: 61  -EPNGSLTSRVLDSNSLSLGLNLKHNEGKQVDIDIHEARSVPSDTKFGPENSFMVSTLRS 120
            +P  +  +R    +S SL LNL   + KQ D+   +A   P+ T   P ++ M ST RS
Sbjct: 61  FQPQMTTPNRSTHRDSPSLELNL---QTKQADV---QAMKRPTLTDLWPNDAAMASTSRS 120

Query: 121 FD-TNVDTTLHL 127
           F+ ++VDT+LHL
Sbjct: 121 FENSDVDTSLHL 125

[Close]

BLAST of MELO3C024110.2 vs. NCBI nr
Match: XP_003617949.1 (uncharacterized protein LOC11418701 [Medicago truncatula] >AET00908.1 hypothetical protein MTR_5g097300 [Medicago truncatula])

HSP 1 Score: 88.6 bits (218), Expect = 1.7e-14
Identity = 60/127 (47.24%), Postives = 78/127 (61.42%), Query Frame = 0


Query: 1   MGRHDSEPTMVGTSIALLQERFRQLQKNKQKRERKELLNLLFESNRVDASIMHLEPEPNG 60
           MGR D++PTMV +SIALLQERFRQL+K K++RE K+LL LL   N   AS   L   PN 
Sbjct: 1   MGRQDNDPTMVNSSIALLQERFRQLEKVKERREGKQLLRLLSTENNTSASTQRL-VVPN- 60

Query: 61  SLTSRVLDSNSLSLGLNLKHNEGKQVDIDIHEARSVPSDTKFGPENSFMVSTLRSFDT-N 120
              +R    +SLSLGLNL   +G        +  ++ S+T   P +    ST R+FDT +
Sbjct: 61  ---NRQTHHDSLSLGLNLTSKQG--------DKSTMKSNTSLSPWSQGASSTSRNFDTSD 114

Query: 121 VDTTLHL 127
           VDT+LHL
Sbjct: 121 VDTSLHL 114

[Close]

BLAST of MELO3C024110.2 vs. NCBI nr
Match: XP_022759858.1 (uncharacterized protein LOC111306214 [Durio zibethinus])

HSP 1 Score: 84.0 bits (206), Expect = 4.1e-13
Identity = 58/132 (43.94%), Postives = 78/132 (59.09%), Query Frame = 0


Query: 1   MGRHDSEPTMVGTSIALLQERFRQLQKNKQKRERKELLNLLFESNRVDASIMHLEP---- 60
           MGR   +PTMV +SIALLQERFRQLQK ++KRE+KELL L  ES R   + M  EP    
Sbjct: 1   MGRQGGDPTMVSSSIALLQERFRQLQKVREKREKKELLKLFSESGRASPT-MRYEPNRMS 60

Query: 61  -EPNGSLTSRVLDSNSLSLGLNLKHNEGKQVDIDIHEARSVPSDTKFGPENSFMVSTLRS 120
            +P   L  R     S SLGLN   +  +Q D     A ++P+ T   P ++   ST ++
Sbjct: 61  FQPEVILPYRPPHQESFSLGLN---SHSRQTDF---RAMAIPTATSLWPNSAATSSTSKN 120

Query: 121 FD-TNVDTTLHL 127
            + ++VDT+LHL
Sbjct: 121 LENSDVDTSLHL 125

[Close]

BLAST of MELO3C024110.2 vs. NCBI nr
Match: EOX93459.1 (Uncharacterized protein TCM_002329 [Theobroma cacao])

HSP 1 Score: 82.4 bits (202), Expect = 1.2e-12
Identity = 58/132 (43.94%), Postives = 78/132 (59.09%), Query Frame = 0


Query: 1   MGRHDSEPTMVGTSIALLQERFRQLQKNKQKRERKELLNLLFESNRVDASIMHLEP---- 60
           MGR   +PTMV +SIALLQERFRQLQK ++KRE KELL L  ES R+  + M  EP    
Sbjct: 1   MGRQGGDPTMVSSSIALLQERFRQLQKVREKREEKELLKLFAESERLSPT-MRYEPNRLS 60

Query: 61  -EPNGSLTSRVLDSNSLSLGLNLKHNEGKQVDIDIHEARSVPSDTKFGPENSFMVSTLRS 120
            +P   L  R    +SLSLGLN    + +Q D     A  +P+     P ++   S  ++
Sbjct: 61  FQPEVILPYRQPPQDSLSLGLN---PQSRQTDF---RAMGIPASPSSWPNSAATSSRSKN 120

Query: 121 FD-TNVDTTLHL 127
           F+ ++VDT+LHL
Sbjct: 121 FENSDVDTSLHL 125

[Close]

BLAST of MELO3C024110.2 vs. TrEMBL
Match: tr|A0A0A0K617|A0A0A0K617_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G272125 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 6.8e-49
Identity = 110/127 (86.61%), Postives = 116/127 (91.34%), Query Frame = 0


Query: 1   MGRHDSEPTMVGTSIALLQERFRQLQKNKQKRERKELLNLLFESNRVDASIMHLEPEPNG 60
           MGRH+SEPTMVGTSIALLQERFRQLQKNKQ+RERKELLNLLFESNRVDASIMHL  EPNG
Sbjct: 1   MGRHNSEPTMVGTSIALLQERFRQLQKNKQRRERKELLNLLFESNRVDASIMHL--EPNG 60

Query: 61  SLTSRVLDSNSLSLGLNLKHNEGKQVDIDIHEARSVPSDTKFGPENSFMVSTLRSFDT-N 120
           S TSR LDSNSLSLGLNL++N GKQVDIDIHEARS+P DTKF   NSFMVST RSFD+ N
Sbjct: 61  SSTSRDLDSNSLSLGLNLENNAGKQVDIDIHEARSMPGDTKFELGNSFMVSTFRSFDSPN 120

Query: 121 VDTTLHL 127
           VDTTLHL
Sbjct: 121 VDTTLHL 125

[Close]

BLAST of MELO3C024110.2 vs. TrEMBL
Match: tr|A0A2P4LI66|A0A2P4LI66_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_18427 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.2e-15
Identity = 61/132 (46.21%), Postives = 83/132 (62.88%), Query Frame = 0


Query: 1   MGRHDSEPTMVGTSIALLQERFRQLQKNKQKRERKELLNLLFESNRVDASIMHLEP---- 60
           MGR  ++PTMV +SIALLQERFRQL+K K++RE KELLNL  E+ R+     H EP    
Sbjct: 1   MGRQSNDPTMVSSSIALLQERFRQLEKVKERREEKELLNLFAETERI-MPTTHFEPSKLS 60

Query: 61  -EPNGSLTSRVLDSNSLSLGLNLKHNEGKQVDIDIHEARSVPSDTKFGPENSFMVSTLRS 120
            +P  +  +R    +S SL LNL   + KQ D+   +A   P+ T   P ++ M ST RS
Sbjct: 61  FQPQMTTPNRSTHRDSPSLELNL---QTKQADV---QAMKRPTLTDLWPNDAAMASTSRS 120

Query: 121 FD-TNVDTTLHL 127
           F+ ++VDT+LHL
Sbjct: 121 FENSDVDTSLHL 125

[Close]

BLAST of MELO3C024110.2 vs. TrEMBL
Match: tr|G7KEN3|G7KEN3_MEDTR (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=11418701 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.1e-14
Identity = 60/127 (47.24%), Postives = 78/127 (61.42%), Query Frame = 0


Query: 1   MGRHDSEPTMVGTSIALLQERFRQLQKNKQKRERKELLNLLFESNRVDASIMHLEPEPNG 60
           MGR D++PTMV +SIALLQERFRQL+K K++RE K+LL LL   N   AS   L   PN 
Sbjct: 1   MGRQDNDPTMVNSSIALLQERFRQLEKVKERREGKQLLRLLSTENNTSASTQRL-VVPN- 60

Query: 61  SLTSRVLDSNSLSLGLNLKHNEGKQVDIDIHEARSVPSDTKFGPENSFMVSTLRSFDT-N 120
              +R    +SLSLGLNL   +G        +  ++ S+T   P +    ST R+FDT +
Sbjct: 61  ---NRQTHHDSLSLGLNLTSKQG--------DKSTMKSNTSLSPWSQGASSTSRNFDTSD 114

Query: 121 VDTTLHL 127
           VDT+LHL
Sbjct: 121 VDTSLHL 114

[Close]

BLAST of MELO3C024110.2 vs. TrEMBL
Match: tr|A0A2N9FNY6|A0A2N9FNY6_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS16854 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 3.2e-14
Identity = 60/132 (45.45%), Postives = 79/132 (59.85%), Query Frame = 0


Query: 1   MGRHDSEPTMVGTSIALLQERFRQLQKNKQKRERKELLNLLFESNRVDASIMHLEP---- 60
           MGR  ++PTMV +SIALLQERFRQL+K K++RE KELL L  E+ R+     H EP    
Sbjct: 1   MGRQSNDPTMVSSSIALLQERFRQLEKVKERREEKELLKLFAETERI-MPTTHFEPSKLS 60

Query: 61  -EPNGSLTSRVLDSNSLSLGLNLKHNEGKQVDIDIHEARSVPSDTKFGPENSFMVSTLRS 120
            +P      R    +S SLGLNL   + KQ D    +A  +P+     P  + M ST RS
Sbjct: 61  FQPEMITPHRSTLQDSPSLGLNL---QTKQADF---QAMKMPTLPNLWPNGAAMASTSRS 120

Query: 121 FD-TNVDTTLHL 127
           F+ ++VDT+LHL
Sbjct: 121 FENSDVDTSLHL 125

[Close]

BLAST of MELO3C024110.2 vs. TrEMBL
Match: tr|A0A061DKX2|A0A061DKX2_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_002329 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 7.9e-13
Identity = 58/132 (43.94%), Postives = 78/132 (59.09%), Query Frame = 0


Query: 1   MGRHDSEPTMVGTSIALLQERFRQLQKNKQKRERKELLNLLFESNRVDASIMHLEP---- 60
           MGR   +PTMV +SIALLQERFRQLQK ++KRE KELL L  ES R+  + M  EP    
Sbjct: 1   MGRQGGDPTMVSSSIALLQERFRQLQKVREKREEKELLKLFAESERLSPT-MRYEPNRLS 60

Query: 61  -EPNGSLTSRVLDSNSLSLGLNLKHNEGKQVDIDIHEARSVPSDTKFGPENSFMVSTLRS 120
            +P   L  R    +SLSLGLN    + +Q D     A  +P+     P ++   S  ++
Sbjct: 61  FQPEVILPYRQPPQDSLSLGLN---PQSRQTDF---RAMGIPASPSSWPNSAATSSRSKN 120

Query: 121 FD-TNVDTTLHL 127
           F+ ++VDT+LHL
Sbjct: 121 FENSDVDTSLHL 125

The following BLAST results are available for this feature:

BLAST of MELO3C024110.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN44369.1	1.0e-48	86.61	hypothetical protein Csa_7G272125 [Cucumis sativus]	[more]
XP_023916992.1	3.4e-15	46.21	uncharacterized protein LOC112028527 [Quercus suber] >POF04971.1 hypothetical pr...	[more]
XP_003617949.1	1.7e-14	47.24	uncharacterized protein LOC11418701 [Medicago truncatula] >AET00908.1 hypothetic...	[more]
XP_022759858.1	4.1e-13	43.94	uncharacterized protein LOC111306214 [Durio zibethinus]	[more]
EOX93459.1	1.2e-12	43.94	Uncharacterized protein TCM_002329 [Theobroma cacao]	[more]

BLAST of MELO3C024110.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C024110.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C024110.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K617\|A0A0A0K617_CUCSA	6.8e-49	86.61	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G272125 PE=4 SV=1	[more]
tr\|A0A2P4LI66\|A0A2P4LI66_QUESU	2.2e-15	46.21	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_18427 PE=4 SV=1	[more]
tr\|G7KEN3\|G7KEN3_MEDTR	1.1e-14	47.24	Uncharacterized protein OS=Medicago truncatula OX=3880 GN=11418701 PE=4 SV=1	[more]
tr\|A0A2N9FNY6\|A0A2N9FNY6_FAGSY	3.2e-14	45.45	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS16854 PE=4 SV=1	[more]
tr\|A0A061DKX2\|A0A061DKX2_THECC	7.9e-13	43.94	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_002329 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C024110.2.1	MELO3C024110.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 15..35
None	No IPR available	PANTHER	PTHR34570	FAMILY NOT NAMED	coord: 1..126
None	No IPR available	PANTHER	PTHR34570:SF6	SUBFAMILY NOT NAMED	coord: 1..126

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C024110.2	Cucsa.240630	Cucumber (Gy14) v1	cgymedB405
MELO3C024110.2	CsaV3_7G023710	Cucumber (Chinese Long) v3	cucmedB530

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C024110.2	Watermelon (97103) v2	medwmbB205
MELO3C024110.2	Wax gourd	medwgoB251
MELO3C024110.2	Cucumber (Gy14) v2	cgybmedB459
MELO3C024110.2	Cucurbita maxima (Rimu)	cmamedB017
MELO3C024110.2	Cucurbita maxima (Rimu)	cmamedB458
MELO3C024110.2	Cucurbita moschata (Rifu)	cmomedB004
MELO3C024110.2	Cucurbita moschata (Rifu)	cmomedB447
MELO3C024110.2	Cucurbita pepo (Zucchini)	cpemedB456
MELO3C024110.2	Cucurbita pepo (Zucchini)	cpemedB846
MELO3C024110.2	Wild cucumber (PI 183967)	cpimedB515
MELO3C024110.2	Cucumber (Chinese Long) v2	cumedB504
MELO3C024110.2	Bottle gourd (USVL1VR-Ls)	lsimedB209
MELO3C024110.2	Watermelon (97103) v1	medwmB192
MELO3C024110.2	Watermelon (Charleston Gray)	medwcgB166