MELO3C024099 (gene) Melon (DHL92) v3.5.1

NameMELO3C024099
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionUDP-N-acetylmuramate--L-alanine ligase
Locationchr1 : 9080216 .. 9080458 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGGTCAGTGTGTGCCCCCTGCCTACACAATGATTCCGCATGGGGAGAGCTGTGTGGTGGGGACAACGACGCGTTACGATCAGGCAGACGTGTCCTCAGCCAGAAAGTTGCGGGTGCAACTTGCATTCAAAGATTCGATGGTTTATGGGATCATGCAATTCACACTAAGTATCACATTTCGCTACATTCTTCATCAAAGCGAGAGCCAAGATATCCATTGCTGTGAGTTATACGACTAG

mRNA sequence

ATGGGAGGTCAGTGTGTGCCCCCTGCCTACACAATGATTCCGCATGGGGAGAGCTGTGTGGTGGGGACAACGACGCGTTACGATCAGGCAGACGTGTCCTCAGCCAGAAAGTTGCGGGTGCAACTTGCATTCAAAGATTCGATGGTTTATGGGATCATGCAATTCACACTAAGTATCACATTTCGCTACATTCTTCATCAAAGCGAGAGCCAAGATATCCATTGCTGTGAGTTATACGACTAG

Coding sequence (CDS)

ATGGGAGGTCAGTGTGTGCCCCCTGCCTACACAATGATTCCGCATGGGGAGAGCTGTGTGGTGGGGACAACGACGCGTTACGATCAGGCAGACGTGTCCTCAGCCAGAAAGTTGCGGGTGCAACTTGCATTCAAAGATTCGATGGTTTATGGGATCATGCAATTCACACTAAGTATCACATTTCGCTACATTCTTCATCAAAGCGAGAGCCAAGATATCCATTGCTGTGAGTTATACGACTAG

Protein sequence

MGGQCVPPAYTMIPHGESCVVGTTTRYDQADVSSARKLRVQLAFKDSMVYGIMQFTLSITFRYILHQSESQDIHCCELYD*
BLAST of MELO3C024099 vs. TrEMBL
Match: A0A0D3AW21_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.5e-11
Identity = 41/70 (58.57%), Postives = 48/70 (68.57%), Query Frame = 1

Query: 13  IPHGESCVV-------GTTTRYDQADVSSARKLRVQLAFKDSMVYGIMQFTLSITFRYIL 72
           + HG S  V       GTT    QADV SAR+L  QLAFKDSMV+GI+QFT SI FRY+L
Sbjct: 279 VTHGRSVSVPYPREDGGTTICNTQADVPSARRLGAQLAFKDSMVHGILQFTPSIAFRYVL 338

Query: 73  HQSESQDIHC 76
           H+ ES+DI C
Sbjct: 339 HRCESRDIRC 348

BLAST of MELO3C024099 vs. TrEMBL
Match: A0A0P1A4T5_9STRA (Uncharacterized protein OS=Plasmopara halstedii PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 7.7e-08
Identity = 33/58 (56.90%), Postives = 40/58 (68.97%), Query Frame = 1

Query: 22 GTTTRYDQADVSSARKLRVQLAFKDSMVYGIMQFTLSITFRYILHQSESQDIHCCELY 80
          G   R  QADV S   LR QLAFK+SMV+GI+QFT SI F Y+LH+  S+DI C E +
Sbjct: 5  GDVMRDAQADVPSTEWLRAQLAFKNSMVHGILQFTPSIAFCYVLHRCVSRDIRCRESF 62

BLAST of MELO3C024099 vs. TrEMBL
Match: A0A072TKH6_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_0021s0160 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.0e-07
Identity = 36/59 (61.02%), Postives = 41/59 (69.49%), Query Frame = 1

Query: 20  VVGTTTRYD-QADVSSARKLRVQLAFKDSMVYGIMQFTLSITFRYILHQSESQDIHCCE 78
           VVG+    D QA V SA   R QLAFKDSMV GI+QFT  I FRY+LH+ ES+DI C E
Sbjct: 343 VVGSVFWRDAQAGVPSAEWPRAQLAFKDSMVRGILQFTPGIAFRYVLHRCESRDIRCRE 401

BLAST of MELO3C024099 vs. NCBI nr
Match: gi|496379958|ref|WP_009088948.1| (hypothetical protein [Elizabethkingia anophelis])

HSP 1 Score: 77.8 bits (190), Expect = 9.7e-12
Identity = 42/74 (56.76%), Postives = 50/74 (67.57%), Query Frame = 1

Query: 13  IPHGESCVV-------GTTTRYDQADVSSARKLRVQLAFKDSMVYGIMQFTLSITFRYIL 72
           + HG S  V       GTT    QADV SAR+L  QLAFKDSMV+GI+QFT SI FRY+L
Sbjct: 27  VTHGRSASVPYPREDGGTTICDTQADVPSARRLGAQLAFKDSMVHGILQFTPSIAFRYVL 86

Query: 73  HQSESQDIHCCELY 80
           H+ ES+DI C E +
Sbjct: 87  HRCESRDIRCRESF 100

BLAST of MELO3C024099 vs. NCBI nr
Match: gi|953504096|emb|CEG35069.1| (hypothetical protein PHALS_14592 [Plasmopara halstedii])

HSP 1 Score: 64.3 bits (155), Expect = 1.1e-07
Identity = 33/58 (56.90%), Postives = 40/58 (68.97%), Query Frame = 1

Query: 22 GTTTRYDQADVSSARKLRVQLAFKDSMVYGIMQFTLSITFRYILHQSESQDIHCCELY 80
          G   R  QADV S   LR QLAFK+SMV+GI+QFT SI F Y+LH+  S+DI C E +
Sbjct: 5  GDVMRDAQADVPSTEWLRAQLAFKNSMVHGILQFTPSIAFCYVLHRCVSRDIRCRESF 62

BLAST of MELO3C024099 vs. NCBI nr
Match: gi|922327861|ref|XP_013443323.1| (hypothetical protein MTR_0021s0160 [Medicago truncatula])

HSP 1 Score: 63.9 bits (154), Expect = 1.5e-07
Identity = 36/59 (61.02%), Postives = 41/59 (69.49%), Query Frame = 1

Query: 20  VVGTTTRYD-QADVSSARKLRVQLAFKDSMVYGIMQFTLSITFRYILHQSESQDIHCCE 78
           VVG+    D QA V SA   R QLAFKDSMV GI+QFT  I FRY+LH+ ES+DI C E
Sbjct: 343 VVGSVFWRDAQAGVPSAEWPRAQLAFKDSMVRGILQFTPGIAFRYVLHRCESRDIRCRE 401

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0D3AW21_BRAOL1.5e-1158.57Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1[more]
A0A0P1A4T5_9STRA7.7e-0856.90Uncharacterized protein OS=Plasmopara halstedii PE=4 SV=1[more]
A0A072TKH6_MEDTR1.0e-0761.02Uncharacterized protein OS=Medicago truncatula GN=MTR_0021s0160 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|496379958|ref|WP_009088948.1|9.7e-1256.76hypothetical protein [Elizabethkingia anophelis][more]
gi|953504096|emb|CEG35069.1|1.1e-0756.90hypothetical protein PHALS_14592 [Plasmopara halstedii][more]
gi|922327861|ref|XP_013443323.1|1.5e-0761.02hypothetical protein MTR_0021s0160 [Medicago truncatula][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C024099T1MELO3C024099T1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None