MELO3C024077 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C024077
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Imidazole glycerol phosphate synthase subunit HisH
Location	chr1 : 8254424 .. 8255391 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCATCAATCAGTGGATCGATTGCTCATAGAGAGTCATCATCTATGATACCACGCATCATGTGGTGGAGTTGCACACACCCACCTGAGTTGAAGGTGATTAAGTCCCAAATCTTCGGGTCAAAAATGGTACGTCACGATTTATCTTCTTCCTCCATACATTCACTATAGTATTTTAGGATTTAGTCTCTTAATTAGCACCTATTGTTGTTCCATTTTCAGGCCCATATACATGAGATTGAACCTATGGATGATAAGCGCGCTTACCTTGATCGGAGTCTTGAAATTCCTATGATGGAAGGTTACAAGGAATACTTACATGACTCTCTTCCTCATCACTTCGAGGATGCCCTGCCACGTACTCATGTCAATAATTTCCCTCTTCCTTCTTACATAGACCATCCCTCTTGTCCTACTCATTACATGGACCATCCCTCTCCTTCTCCTCACTTTAATCATCACCTCCTCCTCCTGTTCAGCATCCCCAGGTGACGTATGATTGTAGCCAGCATGTACATCACCTAGAAGGGAGATTAGATTAGATGGAGGACTTCTTACAATGAATAAAGTCATTCGTGTCGTTCACGTCAACTGAGTTATCAGCCATAAAGAGGCTTCTAATGGCATTGGTTAAGGTATTATTATTATTCACGTGGAACACTTTATTGTTTTTTTCTTAGTTAAGTATTAGTCGTCACTTATGTTTTCTACTGCTTTCTTAATAGGGTAAGAGATTTGGCTCCCAACCATGCTACAACAGTGGTGAAGGTACGCCATTCAATGCACTGGAGGCTCAGACTTTTGTTGGTGGCACATTCGTGGATGTTTCCGCTCCGGACATTGATGACCAACCCATTGATGAGAAGACGAGAACATTCATCAGCGACGACCCTGAGATGGTATCATACTCATTGAAATACCATTTGAGGGTAAGGATATGCCACCACCACCTTTCCAACCCATGTTAG

mRNA sequence

ATGTCATCAATCAGTGGATCGATTGCTCATAGAGAGTCATCATCTATGATACCACGCATCATGTGGTGGAGTTGCACACACCCACCTGAGTTGAAGGTGATTAAGTCCCAAATCTTCGGGTCAAAAATGGCCCATATACATGAGATTGAACCTATGGATGATAAGCGCGCTTACCTTGATCGGAGTCTTGAAATTCCTATGATGGAAGGTTACAAGGAATACTTACATGACTCTCTTCCTCATCACTTCGAGGATGCCCTGCCACGTACTCATGGTAAGAGATTTGGCTCCCAACCATGCTACAACAGTGGTGAAGGTACGCCATTCAATGCACTGGAGGCTCAGACTTTTGTTGGTGGCACATTCGTGGATGTTTCCGCTCCGGACATTGATGACCAACCCATTGATGAGAAGACGAGAACATTCATCAGCGACGACCCTGAGATGGTATCATACTCATTGAAATACCATTTGAGGGTAAGGATATGCCACCACCACCTTTCCAACCCATGTTAG

Coding sequence (CDS)

ATGTCATCAATCAGTGGATCGATTGCTCATAGAGAGTCATCATCTATGATACCACGCATCATGTGGTGGAGTTGCACACACCCACCTGAGTTGAAGGTGATTAAGTCCCAAATCTTCGGGTCAAAAATGGCCCATATACATGAGATTGAACCTATGGATGATAAGCGCGCTTACCTTGATCGGAGTCTTGAAATTCCTATGATGGAAGGTTACAAGGAATACTTACATGACTCTCTTCCTCATCACTTCGAGGATGCCCTGCCACGTACTCATGGTAAGAGATTTGGCTCCCAACCATGCTACAACAGTGGTGAAGGTACGCCATTCAATGCACTGGAGGCTCAGACTTTTGTTGGTGGCACATTCGTGGATGTTTCCGCTCCGGACATTGATGACCAACCCATTGATGAGAAGACGAGAACATTCATCAGCGACGACCCTGAGATGGTATCATACTCATTGAAATACCATTTGAGGGTAAGGATATGCCACCACCACCTTTCCAACCCATGTTAG

Protein sequence

MSSISGSIAHRESSSMIPRIMWWSCTHPPELKVIKSQIFGSKMAHIHEIEPMDDKRAYLDRSLEIPMMEGYKEYLHDSLPHHFEDALPRTHGKRFGSQPCYNSGEGTPFNALEAQTFVGGTFVDVSAPDIDDQPIDEKTRTFISDDPEMVSYSLKYHLRVRICHHHLSNPC*

Homology

[Close]

BLAST of MELO3C024077 vs. TrEMBL
Match: A0A0A0KIM1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G001020 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 9.6e-08
Identity = 30/52 (57.69%), Postives = 37/52 (71.15%), Query Frame = 1


Query: 97  SQPCYNSGEGTPFNALEAQTFVGGTFVDVSAPDIDDQPIDEKTRTFISDDPE 149
           SQP Y  GEG  FN LE+QT VG  FVDV    IDD+ +DE+TRT +SD+P+
Sbjct: 207 SQPYYGGGEGLSFNTLESQTLVGDAFVDVFTSTIDDKLVDEETRTSVSDNPK 258

[Close]

BLAST of MELO3C024077 vs. TrEMBL
Match: A0A0A0KIM1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G001020 PE=4 SV=1)

HSP 1 Score: 40.4 bits (93), Expect = 2.5e+00
Identity = 24/47 (51.06%), Postives = 28/47 (59.57%), Query Frame = 1


Query: 3   SISGSIAHRESSSMIPRIMWWSCTHPPELKVIKSQIFGSKMAHIHEI 50
           SISG +A+RE+SS IP IM  SCTH P LK           A IHE+
Sbjct: 66  SISGWVAYRETSSAIPCIMQLSCTHLPGLK-----------ARIHEL 101

HSP 2 Score: 62.0 bits (149), Expect = 8.2e-07
Identity = 29/54 (53.70%), Postives = 35/54 (64.81%), Query Frame = 1


Query: 93  KRFGSQPCYNSGEGTPFNALEAQTFVGGTFVDVSAPDIDDQPIDEKTRTFISDD 147
           K   SQ CY  GEG  FNA E +  V   F+DV  P+IDDQ +D+KTRT IS+D
Sbjct: 97  KAVDSQQCYGGGEGLSFNASEVENRVDDVFMDVPTPNIDDQHVDDKTRTSISED 150

[Close]

BLAST of MELO3C024077 vs. TrEMBL
Match: A0A0A0M3R6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G701370 PE=4 SV=1)

HSP 1 Score: 39.3 bits (90), Expect = 5.7e+00
Identity = 23/49 (46.94%), Postives = 28/49 (57.14%), Query Frame = 1


Query: 43 MAHIHEIEPMDDKRAYLDRSLEIPMMEGYKEYLHDSLPHHFEDALPRTH 92
          MA I EI+P  D+ AYLDRSLEI   E Y E       H+ + AL  T+
Sbjct: 1  MALIKEIDPTYDEHAYLDRSLEISRAESYVEGPPALTSHYVKYALAYTY 49

HSP 2 Score: 61.6 bits (148), Expect = 1.1e-06
Identity = 34/75 (45.33%), Postives = 44/75 (58.67%), Query Frame = 1


Query: 1  MSSISGSIAHRESSSMIPRIMWWSCTHPPELKVIKSQIFGSKMAHIHEIEPMDDKRAYLD 60
          MSSIS  +A+R S  +IPRIM WSCT+   LK+            +  IEP  ++ AYLD
Sbjct: 1  MSSISERVANRASHDVIPRIMQWSCTYSLGLKIC-----------MQAIEPTHEELAYLD 60

Query: 61 RSLEIPMMEGYKEYL 76
            L+IP  EGYK+ L
Sbjct: 61 TGLDIPSTEGYKDNL 64

[Close]

BLAST of MELO3C024077 vs. NCBI nr
Match: gi|700194378|gb|KGN49555.1| (hypothetical protein Csa_5G001020 [Cucumis sativus])

HSP 1 Score: 65.1 bits (157), Expect = 1.4e-07
Identity = 30/52 (57.69%), Postives = 37/52 (71.15%), Query Frame = 1


Query: 97  SQPCYNSGEGTPFNALEAQTFVGGTFVDVSAPDIDDQPIDEKTRTFISDDPE 149
           SQP Y  GEG  FN LE+QT VG  FVDV    IDD+ +DE+TRT +SD+P+
Sbjct: 207 SQPYYGGGEGLSFNTLESQTLVGDAFVDVFTSTIDDKLVDEETRTSVSDNPK 258

[Close]

BLAST of MELO3C024077 vs. NCBI nr
Match: gi|700194378|gb|KGN49555.1| (hypothetical protein Csa_5G001020 [Cucumis sativus])

HSP 1 Score: 40.4 bits (93), Expect = 3.7e+00
Identity = 24/47 (51.06%), Postives = 28/47 (59.57%), Query Frame = 1


Query: 3   SISGSIAHRESSSMIPRIMWWSCTHPPELKVIKSQIFGSKMAHIHEI 50
           SISG +A+RE+SS IP IM  SCTH P LK           A IHE+
Sbjct: 66  SISGWVAYRETSSAIPCIMQLSCTHLPGLK-----------ARIHEL 101

HSP 2 Score: 62.0 bits (149), Expect = 1.2e-06
Identity = 31/57 (54.39%), Postives = 36/57 (63.16%), Query Frame = 1


Query: 92  GKRFGSQPCYNSGEGTPFNALEAQTFVGGTFVDVSAPDIDDQPIDEKTRTFISDDPE 149
           GK   SQ CY  GEGT FNA +    V   FVD SAP ID+Q I+E+  T IS+DPE
Sbjct: 47  GKAVDSQQCYGGGEGTSFNASKVGNLVDDVFVDFSAPIIDNQTINEEMGTSISEDPE 103

[Close]

BLAST of MELO3C024077 vs. NCBI nr
Match: gi|700211765|gb|KGN66861.1| (hypothetical protein Csa_1G701370 [Cucumis sativus])

HSP 1 Score: 62.0 bits (149), Expect = 1.2e-06
Identity = 29/54 (53.70%), Postives = 35/54 (64.81%), Query Frame = 1


Query: 93  KRFGSQPCYNSGEGTPFNALEAQTFVGGTFVDVSAPDIDDQPIDEKTRTFISDD 147
           K   SQ CY  GEG  FNA E +  V   F+DV  P+IDDQ +D+KTRT IS+D
Sbjct: 97  KAVDSQQCYGGGEGLSFNASEVENRVDDVFMDVPTPNIDDQHVDDKTRTSISED 150

[Close]

BLAST of MELO3C024077 vs. NCBI nr
Match: gi|700211765|gb|KGN66861.1| (hypothetical protein Csa_1G701370 [Cucumis sativus])

HSP 1 Score: 39.3 bits (90), Expect = 8.1e+00
Identity = 23/49 (46.94%), Postives = 28/49 (57.14%), Query Frame = 1


Query: 43 MAHIHEIEPMDDKRAYLDRSLEIPMMEGYKEYLHDSLPHHFEDALPRTH 92
          MA I EI+P  D+ AYLDRSLEI   E Y E       H+ + AL  T+
Sbjct: 1  MALIKEIDPTYDEHAYLDRSLEISRAESYVEGPPALTSHYVKYALAYTY 49

HSP 2 Score: 61.6 bits (148), Expect = 1.5e-06
Identity = 34/75 (45.33%), Postives = 44/75 (58.67%), Query Frame = 1


Query: 1  MSSISGSIAHRESSSMIPRIMWWSCTHPPELKVIKSQIFGSKMAHIHEIEPMDDKRAYLD 60
          MSSIS  +A+R S  +IPRIM WSCT+   LK+            +  IEP  ++ AYLD
Sbjct: 1  MSSISERVANRASHDVIPRIMQWSCTYSLGLKIC-----------MQAIEPTHEELAYLD 60

Query: 61 RSLEIPMMEGYKEYL 76
            L+IP  EGYK+ L
Sbjct: 61 TGLDIPSTEGYKDNL 64

The following BLAST results are available for this feature:

BLAST of MELO3C024077 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KIM1_CUCSA	9.6e-08	57.69	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G001020 PE=4 SV=1	[more]
A0A0A0KIM1_CUCSA	2.5e+00	51.06	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G001020 PE=4 SV=1	[more]
A0A0A0M3R6_CUCSA	5.7e+00	46.94	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G701370 PE=4 SV=1	[more]

BLAST of MELO3C024077 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700194378\|gb\|KGN49555.1\|	1.4e-07	57.69	hypothetical protein Csa_5G001020 [Cucumis sativus]	[more]
gi\|700194378\|gb\|KGN49555.1\|	3.7e+00	51.06	hypothetical protein Csa_5G001020 [Cucumis sativus]	[more]
gi\|700211765\|gb\|KGN66861.1\|	1.2e-06	53.70	hypothetical protein Csa_1G701370 [Cucumis sativus]	[more]
gi\|700211765\|gb\|KGN66861.1\|	8.1e+00	46.94	hypothetical protein Csa_1G701370 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C024077T1	MELO3C024077T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C024077	Cucumber (Gy14) v1	cgymeB085
MELO3C024077	Cucurbita maxima (Rimu)	cmameB019
MELO3C024077	Cucurbita maxima (Rimu)	cmameB396
MELO3C024077	Cucurbita moschata (Rifu)	cmomeB008
MELO3C024077	Cucurbita moschata (Rifu)	cmomeB387
MELO3C024077	Wild cucumber (PI 183967)	cpimeB528
MELO3C024077	Cucumber (Chinese Long) v2	cumeB525
MELO3C024077	Watermelon (Charleston Gray)	mewcgB181
MELO3C024077	Watermelon (97103) v1	mewmB204
MELO3C024077	Cucurbita pepo (Zucchini)	cpemeB505
MELO3C024077	Cucurbita pepo (Zucchini)	cpemeB714
MELO3C024077	Bottle gourd (USVL1VR-Ls)	lsimeB189
MELO3C024077	Cucumber (Gy14) v2	cgybmeB460
MELO3C024077	Silver-seed gourd	carmeB0276
MELO3C024077	Cucumber (Chinese Long) v3	cucmeB540
MELO3C024077	Watermelon (97103) v2	mewmbB230
MELO3C024077	Wax gourd	mewgoB258