MELO3C024076 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C024076
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionATPase, V1 complex, subunit B protein
Locationchr1 : 8230078 .. 8230260 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGCAGTTGAAGAAGAAAAATGCCGAGACTGAAAGACTTCATAAGATAGAGTATGTAGCAGAAATTCAACCAGATGAGATAGAGAAGCTGAAGGGCAGTGAGATGGATGAAGATATTGATGTAGAATCCAACGATGGCTACTGTGAAAGGAATCAGATAGTAAAAGTGGCAAACTACTGA

mRNA sequence

ATGGAGCAGTTGAAGAAGAAAAATGCCGAGACTGAAAGACTTCATAAGATAGAGTATGTAGCAGAAATTCAACCAGATGAGATAGAGAAGCTGAAGGGCAGTGAGATGGATGAAGATATTGATGTAGAATCCAACGATGGCTACTGTGAAAGGAATCAGATAGTAAAAGTGGCAAACTACTGA

Coding sequence (CDS)

ATGGAGCAGTTGAAGAAGAAAAATGCCGAGACTGAAAGACTTCATAAGATAGAGTATGTAGCAGAAATTCAACCAGATGAGATAGAGAAGCTGAAGGGCAGTGAGATGGATGAAGATATTGATGTAGAATCCAACGATGGCTACTGTGAAAGGAATCAGATAGTAAAAGTGGCAAACTACTGA

Protein sequence

MEQLKKKNAETERLHKIEYVAEIQPDEIEKLKGSEMDEDIDVESNDGYCERNQIVKVANY*
Homology
[Close]
BLAST of MELO3C024076 vs. TrEMBL
Match: A0A0A0K807_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G298830 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 8.4e-07
Identity = 28/34 (82.35%), Postives = 31/34 (91.18%), Query Frame = 1 

Query: 22 EIQPDEIEKLKGSEMDEDIDVESNDGYCERNQIV 56
          +IQP EIEKLKGSEMD+DI+VESN GYCERNQ V
Sbjct: 4  KIQPHEIEKLKGSEMDQDINVESNYGYCERNQTV 37

[Close]
BLAST of MELO3C024076 vs. NCBI nr
Match: gi|700189234|gb|KGN44467.1| (hypothetical protein Csa_7G298830 [Cucumis sativus])

HSP 1 Score: 60.5 bits (145), Expect = 1.2e-06
Identity = 28/34 (82.35%), Postives = 31/34 (91.18%), Query Frame = 1 

Query: 22 EIQPDEIEKLKGSEMDEDIDVESNDGYCERNQIV 56
          +IQP EIEKLKGSEMD+DI+VESN GYCERNQ V
Sbjct: 4  KIQPHEIEKLKGSEMDQDINVESNYGYCERNQTV 37

The following BLAST results are available for this feature:
BLAST of MELO3C024076 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K807_CUCSA8.4e-0782.35Uncharacterized protein OS=Cucumis sativus GN=Csa_7G298830 PE=4 SV=1[more]
BLAST of MELO3C024076 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700189234|gb|KGN44467.1|1.2e-0682.35hypothetical protein Csa_7G298830 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C024076T1MELO3C024076T1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C024076Cla016397Watermelon (97103) v1mewmB204
MELO3C024076ClCG09G010170Watermelon (Charleston Gray)mewcgB181
MELO3C024076Bhi09G001289Wax gourdmewgoB258
MELO3C024076Lsi02G019710Bottle gourd (USVL1VR-Ls)lsimeB189
MELO3C024076CsaV3_7G024560Cucumber (Chinese Long) v3cucmeB540
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C024076Cucumber (Gy14) v2cgybmeB460
MELO3C024076Silver-seed gourdcarmeB0276
MELO3C024076Watermelon (97103) v2mewmbB230
MELO3C024076Cucumber (Gy14) v1cgymeB085
MELO3C024076Cucurbita maxima (Rimu)cmameB019
MELO3C024076Cucurbita maxima (Rimu)cmameB396
MELO3C024076Cucurbita moschata (Rifu)cmomeB008
MELO3C024076Cucurbita moschata (Rifu)cmomeB387
MELO3C024076Wild cucumber (PI 183967)cpimeB528
MELO3C024076Cucumber (Chinese Long) v2cumeB525
MELO3C024076Cucurbita pepo (Zucchini)cpemeB505
MELO3C024076Cucurbita pepo (Zucchini)cpemeB714