MELO3C024073.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C024073.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	trigger factor-like isoform X2
Location	chr01 : 8587619 .. 8587834 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCATTTTTTGTAATTTTTTCAAGAGGCATGCCTTCCCCAACATCGTGGAGTGTTGCAGTATTTTTGATAGGAACATAATTGAAGCGGCAGCGGGTGGAGCCTTGGAGGATAAAACACCCACAGTGGCTCGAGACTTAATCTTCTTCATGGTTGAACACTCTAAAAGTTATGAGAGTAGACCCACCGAGCTTGACAATGAAACATCCAAAGAG

mRNA sequence

ATGGGCATTTTTTGTAATTTTTTCAAGAGGCATGCCTTCCCCAACATCGTGGAGTGTTGCAGTATTTTTGATAGGAACATAATTGAAGCGGCAGCGGGTGGAGCCTTGGAGGATAAAACACCCACAGTGGCTCGAGACTTAATCTTCTTCATGGTTGAACACTCTAAAAGTTATGAGAGTAGACCCACCGAGCTTGACAATGAAACATCCAAAGAG

Coding sequence (CDS)

ATGGGCATTTTTTGTAATTTTTTCAAGAGGCATGCCTTCCCCAACATCGTGGAGTGTTGCAGTATTTTTGATAGGAACATAATTGAAGCGGCAGCGGGTGGAGCCTTGGAGGATAAAACACCCACAGTGGCTCGAGACTTAATCTTCTTCATGGTTGAACACTCTAAAAGTTATGAGAGTAGACCCACCGAGCTTGACAATGAAACATCCAAAGAG

Protein sequence

MGIFCNFFKRHAFPNIVECCSIFDRNIIEAAAGGALEDKTPTVARDLIFFMVEHSKSYESRPTELDNETSKE

Homology

[Close]

BLAST of MELO3C024073.2 vs. NCBI nr
Match: XP_008460738.1 (PREDICTED: uncharacterized protein LOC103499500 [Cucumis melo])

HSP 1 Score: 56.6 bits (135), Expect = 4.0e-05
Identity = 28/50 (56.00%), Postives = 39/50 (78.00%), Query Frame = 0


Query: 23  FDRNIIEAAAGGALEDKTPTVARDLIFFMVEHSKSYESRPTELDNETSKE 73
           FDR  ++AAAGGAL +KTPT AR+LI  M E+S+S+ +R +ELD+  +KE
Sbjct: 172 FDRITVDAAAGGALVNKTPTEARELISRMAENSQSFGNRASELDDSLTKE 221

[Close]

BLAST of MELO3C024073.2 vs. NCBI nr
Match: XP_008465471.1 (PREDICTED: uncharacterized protein LOC103503078, partial [Cucumis melo])

HSP 1 Score: 55.1 bits (131), Expect = 1.2e-04
Identity = 27/47 (57.45%), Postives = 36/47 (76.60%), Query Frame = 0


Query: 26 NIIEAAAGGALEDKTPTVARDLIFFMVEHSKSYESRPTELDNETSKE 73
          N ++AAAGGAL DKTPT AR+LI  M E+S+S+ ++ +ELDN   KE
Sbjct: 1  NTVDAAAGGALADKTPTGARELISRMAENSQSFGNKASELDNSLIKE 47

[Close]

BLAST of MELO3C024073.2 vs. NCBI nr
Match: XP_008465649.1 (PREDICTED: uncharacterized protein LOC103503291, partial [Cucumis melo])

HSP 1 Score: 52.8 bits (125), Expect = 5.8e-04
Identity = 26/47 (55.32%), Postives = 36/47 (76.60%), Query Frame = 0


Query: 26 NIIEAAAGGALEDKTPTVARDLIFFMVEHSKSYESRPTELDNETSKE 73
          N ++AAA GAL DKTP  AR+LI  MVE+S+++ +R +ELDN  +KE
Sbjct: 1  NKVDAAARGALADKTPIEARELILRMVENSQNFGNRASELDNSLTKE 47

[Close]

BLAST of MELO3C024073.2 vs. TrEMBL
Match: tr|A0A1S3CD34|A0A1S3CD34_CUCME (uncharacterized protein LOC103499500 OS=Cucumis melo OX=3656 GN=LOC103499500 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.7e-05
Identity = 28/50 (56.00%), Postives = 39/50 (78.00%), Query Frame = 0


Query: 23  FDRNIIEAAAGGALEDKTPTVARDLIFFMVEHSKSYESRPTELDNETSKE 73
           FDR  ++AAAGGAL +KTPT AR+LI  M E+S+S+ +R +ELD+  +KE
Sbjct: 172 FDRITVDAAAGGALVNKTPTEARELISRMAENSQSFGNRASELDDSLTKE 221

[Close]

BLAST of MELO3C024073.2 vs. TrEMBL
Match: tr|A0A1S3CQF6|A0A1S3CQF6_CUCME (uncharacterized protein LOC103503078 OS=Cucumis melo OX=3656 GN=LOC103503078 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 7.7e-05
Identity = 27/47 (57.45%), Postives = 36/47 (76.60%), Query Frame = 0


Query: 26 NIIEAAAGGALEDKTPTVARDLIFFMVEHSKSYESRPTELDNETSKE 73
          N ++AAAGGAL DKTPT AR+LI  M E+S+S+ ++ +ELDN   KE
Sbjct: 1  NTVDAAAGGALADKTPTGARELISRMAENSQSFGNKASELDNSLIKE 47

[Close]

BLAST of MELO3C024073.2 vs. TrEMBL
Match: tr|A0A1S3CQU8|A0A1S3CQU8_CUCME (uncharacterized protein LOC103503291 OS=Cucumis melo OX=3656 GN=LOC103503291 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 3.8e-04
Identity = 26/47 (55.32%), Postives = 36/47 (76.60%), Query Frame = 0


Query: 26 NIIEAAAGGALEDKTPTVARDLIFFMVEHSKSYESRPTELDNETSKE 73
          N ++AAA GAL DKTP  AR+LI  MVE+S+++ +R +ELDN  +KE
Sbjct: 1  NKVDAAARGALADKTPIEARELILRMVENSQNFGNRASELDNSLTKE 47

The following BLAST results are available for this feature:

BLAST of MELO3C024073.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008460738.1	4.0e-05	56.00	PREDICTED: uncharacterized protein LOC103499500 [Cucumis melo]	[more]
XP_008465471.1	1.2e-04	57.45	PREDICTED: uncharacterized protein LOC103503078, partial [Cucumis melo]	[more]
XP_008465649.1	5.8e-04	55.32	PREDICTED: uncharacterized protein LOC103503291, partial [Cucumis melo]	[more]

BLAST of MELO3C024073.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C024073.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C024073.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CD34\|A0A1S3CD34_CUCME	2.7e-05	56.00	uncharacterized protein LOC103499500 OS=Cucumis melo OX=3656 GN=LOC103499500 PE=...	[more]
tr\|A0A1S3CQF6\|A0A1S3CQF6_CUCME	7.7e-05	57.45	uncharacterized protein LOC103503078 OS=Cucumis melo OX=3656 GN=LOC103503078 PE=...	[more]
tr\|A0A1S3CQU8\|A0A1S3CQU8_CUCME	3.8e-04	55.32	uncharacterized protein LOC103503291 OS=Cucumis melo OX=3656 GN=LOC103503291 PE=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006457	protein folding
biological_process	GO:0015031	protein transport
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C024073.2.1	MELO3C024073.2.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C024073.2	Cucumber (Gy14) v2	cgybmedB458
MELO3C024073.2	Cucumber (Gy14) v1	cgymedB083
MELO3C024073.2	Cucurbita maxima (Rimu)	cmamedB020
MELO3C024073.2	Cucurbita maxima (Rimu)	cmamedB456
MELO3C024073.2	Cucurbita moschata (Rifu)	cmomedB008
MELO3C024073.2	Cucurbita moschata (Rifu)	cmomedB444
MELO3C024073.2	Cucurbita pepo (Zucchini)	cpemedB597
MELO3C024073.2	Cucurbita pepo (Zucchini)	cpemedB848
MELO3C024073.2	Wild cucumber (PI 183967)	cpimedB514
MELO3C024073.2	Cucumber (Chinese Long) v2	cumedB503
MELO3C024073.2	Bottle gourd (USVL1VR-Ls)	lsimedB198
MELO3C024073.2	Watermelon (Charleston Gray)	medwcgB176
MELO3C024073.2	Watermelon (97103) v1	medwmB204
MELO3C024073.2	Silver-seed gourd	carmedB0288
MELO3C024073.2	Cucumber (Chinese Long) v3	cucmedB529
MELO3C024073.2	Watermelon (97103) v2	medwmbB216
MELO3C024073.2	Wax gourd	medwgoB259