MELO3C024067 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C024067
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionRetrotransposon protein, putative, unclassified
Locationchr1 : 7998230 .. 7998727 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGGAAGTCCAACTAGTTAATCATCGGAACTTAGCCCTAAAGTTAGCTTTCAATGAGTGGGGGGTCCACGGGCCGAGAAAGAAAGAAGCCCAAGGCCAGGCCAACAATAAGTCCACTAATACTCAGCCAGAAGAAACTAGACAAGATGGGCGTGAAACTTATATGAGACAAATCAAGATTCCCAATCGGGGAAACTACGCAAAACGTGAGCCACCGGTGAAGAGGTTGTTTGATGGTGAGTTCCGAGTTCACCTCGACAAAGGTTTGTGCTTCCGCTACAATGAGAAGTACTCACCCACGCATCGTTGCAAGGGGAAGGAAAATCGGGAGTTGATGCTGTTCATATTCTACAATGACGAAGAAACAGAGGAGGTGGAGGAAGCCGAGGGAGAGGAAGCTGAAACATTGGAATTAAAAAGGATGGAAATCATAGAAGAAACAGAAATCTCACTTTGCACCATCAATGGGTTTCTCGAAAGGGGACTATTAAGCTAA

mRNA sequence

ATGAGGGAAGTCCAACTAGTTAATCATCGGAACTTAGCCCTAAAGTTAGCTTTCAATGAGTGGGGGGTCCACGGGCCGAGAAAGAAAGAAGCCCAAGGCCAGGCCAACAATAAGTCCACTAATACTCAGCCAGAAGAAACTAGACAAGATGGGCGTGAAACTTATATGAGACAAATCAAGATTCCCAATCGGGGAAACTACGCAAAACGTGAGCCACCGGTGAAGAGGTTGTTTGATGGTGAGTTCCGAGTTCACCTCGACAAAGGTTTGTGCTTCCGCTACAATGAGAAGTACTCACCCACGCATCGTTGCAAGGGGAAGGAAAATCGGGAGTTGATGCTGTTCATATTCTACAATGACGAAGAAACAGAGGAGGTGGAGGAAGCCGAGGGAGAGGAAGCTGAAACATTGGAATTAAAAAGGATGGAAATCATAGAAGAAACAGAAATCTCACTTTGCACCATCAATGGGTTTCTCGAAAGGGGACTATTAAGCTAA

Coding sequence (CDS)

ATGAGGGAAGTCCAACTAGTTAATCATCGGAACTTAGCCCTAAAGTTAGCTTTCAATGAGTGGGGGGTCCACGGGCCGAGAAAGAAAGAAGCCCAAGGCCAGGCCAACAATAAGTCCACTAATACTCAGCCAGAAGAAACTAGACAAGATGGGCGTGAAACTTATATGAGACAAATCAAGATTCCCAATCGGGGAAACTACGCAAAACGTGAGCCACCGGTGAAGAGGTTGTTTGATGGTGAGTTCCGAGTTCACCTCGACAAAGGTTTGTGCTTCCGCTACAATGAGAAGTACTCACCCACGCATCGTTGCAAGGGGAAGGAAAATCGGGAGTTGATGCTGTTCATATTCTACAATGACGAAGAAACAGAGGAGGTGGAGGAAGCCGAGGGAGAGGAAGCTGAAACATTGGAATTAAAAAGGATGGAAATCATAGAAGAAACAGAAATCTCACTTTGCACCATCAATGGGTTTCTCGAAAGGGGACTATTAAGCTAA

Protein sequence

MREVQLVNHRNLALKLAFNEWGVHGPRKKEAQGQANNKSTNTQPEETRQDGRETYMRQIKIPNRGNYAKREPPVKRLFDGEFRVHLDKGLCFRYNEKYSPTHRCKGKENRELMLFIFYNDEETEEVEEAEGEEAETLELKRMEIIEETEISLCTINGFLERGLLS*
Homology
[Close]
BLAST of MELO3C024067 vs. TrEMBL
Match: E5GCI2_CUCME (Retrotransposon protein (Fragment) OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 4.0e-19
Identity = 51/86 (59.30%), Postives = 59/86 (68.60%), Query Frame = 1 

Query: 56  MRQIKIPNRGNYAKREP--PVKRLFDGEFRVHLDKGLCFRYNEKYSPTHRCKGKENRELM 115
           M+Q+ +P +GN+ K+EP  PVKRL D EFR  LDKGLCFR N+KYSP HRCK K NRELM
Sbjct: 209 MKQLTLPIKGNFVKKEPQPPVKRLSDSEFRARLDKGLCFRCNDKYSPGHRCKAKTNRELM 268

Query: 116 LFIFYNDEETEEVEEAEGEEAETLEL 140
            FI   DEE    +E E E  E  EL
Sbjct: 269 FFITNEDEELGTEKEKEDEVTEEAEL 294

[Close]
BLAST of MELO3C024067 vs. TrEMBL
Match: A5B2I6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043911 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 6.4e-09
Identity = 48/166 (28.92%), Postives = 78/166 (46.99%), Query Frame = 1 

Query: 1    MREVQLVNHRNLALKLAFNEWGVHGPRKKEAQGQANNKSTNTQPEETRQDGRETYMRQIK 60
            M   Q V  RNLA++ A           +E  G  + K  +T      + G     R + 
Sbjct: 914  MEMAQRVEDRNLAMRAA-----------REPNGPKSTKMLSTANRGEWKIGENFQTRAVA 973

Query: 61   IPNRGNYAKREPPVKRLFDGEFRVHLDKGLCFRYNEKYSPTHRCKGKENRELMLFIFYND 120
            +  +    +RE P+KRL + E +   +KGL F+  EK+SP HRCK    +EL + + + D
Sbjct: 974  VGEKTMSQRREIPIKRLTESELQARREKGLWFKCEEKFSPGHRCK----KELRVLLVHED 1033

Query: 121  EETE--EVEEAEGEEAETLELKRMEIIEETEISLCTINGFLERGLL 165
            EE +  + ++   EE   +ELK     +  E+SL ++ G    G +
Sbjct: 1034 EEEDDNQFDDRATEEPALIELK-----DAVELSLNSVVGLTTPGTM 1059

[Close]
BLAST of MELO3C024067 vs. TrEMBL
Match: A5BCT4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003157 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 4.2e-08
Identity = 48/164 (29.27%), Postives = 78/164 (47.56%), Query Frame = 1 

Query: 1   MREVQLVNHRNLALKLAFNEWGVHGPRKKEAQGQANNKSTNTQPEETRQDGRETYMRQIK 60
           M   Q V +RNL L      W    PR  ++      K  ++  +   + G     R + 
Sbjct: 116 MEMAQRVENRNLTL------WAAREPRDPKS-----TKMLSSANQGDWKIGENFQTRAVA 175

Query: 61  IPNRGNYAKREPPVKRLFDGEFRVHLDKGLCFRYNEKYSPTHRCKGKENRELMLFIFYND 120
           I  +     RE P+KRL + E +   +KG+CF+ +EK+S  HRCK KE R L++      
Sbjct: 176 IREKMMNQHREIPIKRLTESELQARREKGICFKCDEKFSLGHRCK-KELRVLLV------ 235

Query: 121 EETEEVEEAEGEEAETLELKRMEIIEETEISLCTINGFLERGLL 165
            E E  E+ + +E  T+E   +E+ +  E+SL ++ G    G +
Sbjct: 236 HEDEREEDNQFDERATMEPSLIELKDAMELSLNSVVGLTTPGTM 261

[Close]
BLAST of MELO3C024067 vs. TrEMBL
Match: A0A0V0IZ28_SOLCH (Putative ovule protein OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.5e-07
Identity = 53/163 (32.52%), Postives = 70/163 (42.94%), Query Frame = 1 

Query: 1   MREVQLVNHRNLALKLAFNEWGVHGPRKKEAQGQANNKSTNTQPE--------ETRQDGR 60
           M   Q V  RN  L+       V G + +  +G A+NK    +P         E+R    
Sbjct: 92  MEMAQKVEDRNYVLQQ------VQGFKFESGRGSASNKPVGFRPNYHRVANILESRDSRA 151

Query: 61  ETYMRQIKIP----------NRGNYAKREPPVKRLFDGEFRVHLDKGLCFRYNEKYSPTH 120
               R    P          N    AK E   KRL D EF    + GLCFR +EK+ P H
Sbjct: 152 GXASRNTDSPVHTATKSTSFNGTAVAKSEGQFKRLSDSEFARKRELGLCFRCDEKFGPNH 211

Query: 121 RCKGKENRELMLFIF-----YNDEETEEVEEAEGEEAETLELK 141
           RCK   NR+L L I       +++ETEE  E+ GE+    E+K
Sbjct: 212 RCK---NRQLNLLIISEAPNIDEDETEEFFESTGEDVTEGEMK 245

[Close]
BLAST of MELO3C024067 vs. TrEMBL
Match: A5C0Y9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_012977 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.5e-07
Identity = 46/166 (27.71%), Postives = 79/166 (47.59%), Query Frame = 1 

Query: 1   MREVQLVNHRNLALKLAFNEWGVHGPRKKEAQGQANNKSTNTQPEETRQDGRETYMRQIK 60
           M   Q V  RNL +++A           +E +   + K  ++      + G+    R + 
Sbjct: 307 MEMAQRVKDRNLTMRVA-----------REPKDPKSTKMLSSAIRGDWKIGKNFQTRAVA 366

Query: 61  IPNRGNYAKREPPVKRLFDGEFRVHLDKGLCFRYNEKYSPTHRCKGKENRELMLFIFYND 120
           +  +    +RE P+KRL + E +   +KGLCF+ +EK+SP H  K    +EL + + + D
Sbjct: 367 VSEKTISQRREIPIKRLAESELQALREKGLCFKCDEKFSPGHHYK----KELRVLLVHED 426

Query: 121 EETEEVEEAEG--EEAETLELKRMEIIEETEISLCTINGFLERGLL 165
           EE E+ +   G  EE   +ELK     +  E+SL ++ G    G +
Sbjct: 427 EEEEDNQFDGGTTEEPSLIELK-----DVVELSLNSVVGLTTSGTM 452

[Close]
BLAST of MELO3C024067 vs. NCBI nr
Match: gi|659109624|ref|XP_008454797.1| (PREDICTED: uncharacterized protein LOC103495115 [Cucumis melo])

HSP 1 Score: 144.4 bits (363), Expect = 1.7e-31
Identity = 80/164 (48.78%), Postives = 100/164 (60.98%), Query Frame = 1 

Query: 1   MREVQLVNHRNLALKLAFNEWGVHGPRKKEAQGQANNKSTNTQPEETRQDGRETYMRQIK 60
           M+E Q+VN RNLALKLA  E  V    K+     +     N +  + + D +   M+QI 
Sbjct: 1   MKEAQMVNDRNLALKLARMEL-VLAELKERGSSTSRKIVENERVVQLKTDFQ---MKQIT 60

Query: 61  IPNRGNYAKREPPVKRLFDGEFRVHLDKGLCFRYNEKYSPTHRCKGKENRELMLFIFYND 120
           IP +GNY K EPPVKRL D EFR  LD+GLCFR N+ YSP HRCK KE RELM FI   +
Sbjct: 61  IPIKGNYKKGEPPVKRLSDAEFRTRLDRGLCFRCNDNYSPGHRCKTKEKRELMFFILNEE 120

Query: 121 EETEEVEEAEGEEAETLELKRMEIIEETEISLCTINGFLERGLL 165
           EE EE    + +E  T+ELK +EI E TEI L T+ G   +G +
Sbjct: 121 EEAEEEHSKDEKEKRTVELKNLEITEGTEIELKTMTGLTSKGTM 160

[Close]
BLAST of MELO3C024067 vs. NCBI nr
Match: gi|778697580|ref|XP_011654353.1| (PREDICTED: uncharacterized protein LOC105435354 [Cucumis sativus])

HSP 1 Score: 140.2 bits (352), Expect = 3.3e-30
Identity = 77/164 (46.95%), Postives = 100/164 (60.98%), Query Frame = 1 

Query: 1   MREVQLVNHRNLALKLAFNEWGVHGPRKKEAQGQANNKSTNTQPEETRQDGRETYMRQIK 60
           MRE QLVN RNLAL+ +  E G  G   K+ +G  N      +   TR+   E  ++Q+ 
Sbjct: 227 MREAQLVNDRNLALQWSKAEGG--GLNYKKGEGSTNKGPEGGEKGITRKT--EFPLKQVT 286

Query: 61  IPNRGNYAKREPPVKRLFDGEFRVHLDKGLCFRYNEKYSPTHRCKGKENRELMLFIFYND 120
           IP +GNY K EPPVKRL D EF+  LDKGLCF+ NE+YSP HRCK K+ RELMLFI   +
Sbjct: 287 IPIKGNYQKSEPPVKRLLDVEFKARLDKGLCFKCNERYSPGHRCKMKDKRELMLFIMNEE 346

Query: 121 EETEEVEEAEGEEAETLELKRMEIIEETEISLCTINGFLERGLL 165
           E  E+ +  E    E LEL ++ + E TEI L  I+G   +G +
Sbjct: 347 ESLEDEDRTEETNEEVLELNQLTLEEGTEIELKAIHGLTSKGTM 386

[Close]
BLAST of MELO3C024067 vs. NCBI nr
Match: gi|659093726|ref|XP_008447685.1| (PREDICTED: uncharacterized protein LOC103490096 [Cucumis melo])

HSP 1 Score: 139.4 bits (350), Expect = 5.6e-30
Identity = 79/168 (47.02%), Postives = 99/168 (58.93%), Query Frame = 1 

Query: 1   MREVQLVNHRNLALKLAFNEWGVHGPRKKEAQGQANNKSTNTQPEETRQDG----RETYM 60
           M   QLVN RNLALKLA  E G+  P++ EA        TNT+       G     E  M
Sbjct: 227 MMAAQLVNDRNLALKLAQAEMGIMEPKRSEA--------TNTKVPWNNDKGSMRKNEFQM 286

Query: 61  RQIKIPNRGNYAKREPPVKRLFDGEFRVHLDKGLCFRYNEKYSPTHRCKGKENRELMLFI 120
           +QI IP + +Y K EPPVKRL D EFR  LDKGLCFR NEKYS  H CK KE R+LMLFI
Sbjct: 287 KQITIPLKRSYHKGEPPVKRLSDAEFRARLDKGLCFRCNEKYSHEHHCKIKEKRDLMLFI 346

Query: 121 FYNDEETEEVEEAEGEEAETLELKRMEIIEETEISLCTINGFLERGLL 165
              +E TEE E ++ ++ E LE+ ++E++EE  I    I     +G +
Sbjct: 347 LNEEESTEEGEGSDTQKTEPLEINQLEVLEEAVIEYRAITSLTTKGTM 386

[Close]
BLAST of MELO3C024067 vs. NCBI nr
Match: gi|659077522|ref|XP_008439250.1| (PREDICTED: uncharacterized protein LOC103484090 [Cucumis melo])

HSP 1 Score: 138.3 bits (347), Expect = 1.2e-29
Identity = 78/169 (46.15%), Postives = 100/169 (59.17%), Query Frame = 1 

Query: 1   MREVQLVNHRNLALKLA-----FNEWGVHGPRKKEAQGQANNKSTNTQPEETRQDGRETY 60
           M+E QLVN RNLALKL+       EW   G  K +  G A+       P +T     +  
Sbjct: 1   MKEAQLVNDRNLALKLSKMELGMTEWEEGGSSKVKKLGDADKPP----PRKT-----DFQ 60

Query: 61  MRQIKIPNRGNYAKREPPVKRLFDGEFRVHLDKGLCFRYNEKYSPTHRCKGKENRELMLF 120
           M+QI IP +GN+ K EPP+KRL D EFR  +D+GLCFR N+KYSP HRCK KE RELM F
Sbjct: 61  MKQITIPIKGNFKKGEPPMKRLSDAEFRARIDRGLCFRCNDKYSPGHRCKTKEKRELMFF 120

Query: 121 IFYNDEETEEVEEAEGEEAETLELKRMEIIEETEISLCTINGFLERGLL 165
           I   +EE EE +  E     T+ELK +E+ E+  I L T+  F  +G +
Sbjct: 121 IMNEEEENEEGDSHEEVTEGTVELKTLELTEDIAIELKTMTRFSSKGTM 160

[Close]
BLAST of MELO3C024067 vs. NCBI nr
Match: gi|659094491|ref|XP_008448087.1| (PREDICTED: uncharacterized protein LOC103490375 [Cucumis melo])

HSP 1 Score: 137.9 bits (346), Expect = 1.6e-29
Identity = 79/169 (46.75%), Postives = 98/169 (57.99%), Query Frame = 1 

Query: 1   MREVQLVNHRNLALKLA-----FNEWGVHGPRKKEAQGQANNKSTNTQPEETRQDGRETY 60
           MRE QLVN RNLALKL+       EW   G  K +  G  +       P +T     +  
Sbjct: 170 MREAQLVNDRNLALKLSKMELGMTEWEEGGSSKVKKLGDVDKPP----PRKT-----DFQ 229

Query: 61  MRQIKIPNRGNYAKREPPVKRLFDGEFRVHLDKGLCFRYNEKYSPTHRCKGKENRELMLF 120
           M+QI IP +GN+ K EPPVKRL D EFR  LD+GLCFR N+KYSP HRCK KE RELM F
Sbjct: 230 MKQITIPIKGNFKKGEPPVKRLSDAEFRARLDRGLCFRCNDKYSPGHRCKTKEKRELMFF 289

Query: 121 IFYNDEETEEVEEAEGEEAETLELKRMEIIEETEISLCTINGFLERGLL 165
           I   +EE EE E  E     T+ELK +E+ E+  I + T+     +G +
Sbjct: 290 IMNEEEEDEEGESHEEVTEGTVELKTLELTEDVAIEMKTMTRLSSKGTM 329

The following BLAST results are available for this feature:
BLAST of MELO3C024067 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GCI2_CUCME4.0e-1959.30Retrotransposon protein (Fragment) OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A5B2I6_VITVI6.4e-0928.92Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043911 PE=4 SV=1[more]
A5BCT4_VITVI4.2e-0829.27Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003157 PE=4 SV=1[more]
A0A0V0IZ28_SOLCH3.5e-0732.52Putative ovule protein OS=Solanum chacoense PE=4 SV=1[more]
A5C0Y9_VITVI3.5e-0727.71Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_012977 PE=4 SV=1[more]
BLAST of MELO3C024067 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659109624|ref|XP_008454797.1|1.7e-3148.78PREDICTED: uncharacterized protein LOC103495115 [Cucumis melo][more]
gi|778697580|ref|XP_011654353.1|3.3e-3046.95PREDICTED: uncharacterized protein LOC105435354 [Cucumis sativus][more]
gi|659093726|ref|XP_008447685.1|5.6e-3047.02PREDICTED: uncharacterized protein LOC103490096 [Cucumis melo][more]
gi|659077522|ref|XP_008439250.1|1.2e-2946.15PREDICTED: uncharacterized protein LOC103484090 [Cucumis melo][more]
gi|659094491|ref|XP_008448087.1|1.6e-2946.75PREDICTED: uncharacterized protein LOC103490375 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:2000028 regulation of photoperiodism, flowering
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU66737melon EST collection version 4.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C024067T1MELO3C024067T1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU66737MU66737transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 119..139
scor

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C024067Bhi09G001293Wax gourdmewgoB258
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C024067Silver-seed gourdcarmeB0276
MELO3C024067Cucumber (Chinese Long) v3cucmeB540
MELO3C024067Watermelon (97103) v2mewmbB230
MELO3C024067Cucumber (Gy14) v1cgymeB085
MELO3C024067Cucurbita maxima (Rimu)cmameB019
MELO3C024067Cucurbita maxima (Rimu)cmameB396
MELO3C024067Cucurbita moschata (Rifu)cmomeB008
MELO3C024067Cucurbita moschata (Rifu)cmomeB387
MELO3C024067Wild cucumber (PI 183967)cpimeB528
MELO3C024067Cucumber (Chinese Long) v2cumeB525
MELO3C024067Watermelon (Charleston Gray)mewcgB181
MELO3C024067Watermelon (97103) v1mewmB204
MELO3C024067Cucurbita pepo (Zucchini)cpemeB505
MELO3C024067Cucurbita pepo (Zucchini)cpemeB714
MELO3C024067Bottle gourd (USVL1VR-Ls)lsimeB189
MELO3C024067Cucumber (Gy14) v2cgybmeB460