MELO3C023967.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C023967.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Unknown protein
Location	chr04 : 24221685 .. 24221894 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCTTCAATGAGATTCCCTCATCTTGTTGTTGTTGCTGTTGTTTTGGTTCTTGCTATGGTGAGCATAGAAATGAAGAAAGTTGATAGCATTGAGGATGAGTTAGCTCCAATGCCTGCTATGGCTGCTGGCTTAGCATTTCCTTCTTCTGTTGCTTTTGGTTTCAATTTTGTTGTCCCTCTTTTGCTTTGTGTTTTTGGTGTCTAA

mRNA sequence

ATGGCTTCTTCAATGAGATTCCCTCATCTTGTTGTTGTTGCTGTTGTTTTGGTTCTTGCTATGGTGAGCATAGAAATGAAGAAAGTTGATAGCATTGAGGATGAGTTAGCTCCAATGCCTGCTATGGCTGCTGGCTTAGCATTTCCTTCTTCTGTTGCTTTTGGTTTCAATTTTGTTGTCCCTCTTTTGCTTTGTGTTTTTGGTGTCTAA

Coding sequence (CDS)

ATGGCTTCTTCAATGAGATTCCCTCATCTTGTTGTTGTTGCTGTTGTTTTGGTTCTTGCTATGGTGAGCATAGAAATGAAGAAAGTTGATAGCATTGAGGATGAGTTAGCTCCAATGCCTGCTATGGCTGCTGGCTTAGCATTTCCTTCTTCTGTTGCTTTTGGTTTCAATTTTGTTGTCCCTCTTTTGCTTTGTGTTTTTGGTGTCTAA

Protein sequence

MASSMRFPHLVVVAVVLVLAMVSIEMKKVDSIEDELAPMPAMAAGLAFPSSVAFGFNFVVPLLLCVFGV

Homology

[Close]

BLAST of MELO3C023967.2 vs. NCBI nr
Match: KGN58599.1 (hypothetical protein Csa_3G697920 [Cucumis sativus])

HSP 1 Score: 120.9 bits (302), Expect = 1.7e-24
Identity = 66/69 (95.65%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 1  MASSMRFPHLVVVAVVLVLAMVSIEMKKVDSIEDELAPMPAMAAGLAFPSSVAFGFNFVV 60
          MASSMRFPH VVVAVVLVLAMVSIEMKKVDSIEDELAPMPAMAAG AFPSSVA GFNFVV
Sbjct: 1  MASSMRFPHFVVVAVVLVLAMVSIEMKKVDSIEDELAPMPAMAAGFAFPSSVALGFNFVV 60

Query: 61 PLLLCVFGV 70
          PLLLCVFGV
Sbjct: 61 PLLLCVFGV 69

[Close]

BLAST of MELO3C023967.2 vs. TrEMBL
Match: tr|A0A0A0LCE5|A0A0A0LCE5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G697920 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.1e-24
Identity = 66/69 (95.65%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 1  MASSMRFPHLVVVAVVLVLAMVSIEMKKVDSIEDELAPMPAMAAGLAFPSSVAFGFNFVV 60
          MASSMRFPH VVVAVVLVLAMVSIEMKKVDSIEDELAPMPAMAAG AFPSSVA GFNFVV
Sbjct: 1  MASSMRFPHFVVVAVVLVLAMVSIEMKKVDSIEDELAPMPAMAAGFAFPSSVALGFNFVV 60

Query: 61 PLLLCVFGV 70
          PLLLCVFGV
Sbjct: 61 PLLLCVFGV 69

The following BLAST results are available for this feature:

BLAST of MELO3C023967.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN58599.1	1.7e-24	95.65	hypothetical protein Csa_3G697920 [Cucumis sativus]	[more]

BLAST of MELO3C023967.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C023967.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C023967.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LCE5\|A0A0A0LCE5_CUCSA	1.1e-24	95.65	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G697920 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C023967.2.1	MELO3C023967.2.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C023967.2	Csa3G697920	Cucumber (Chinese Long) v2	cumedB193
MELO3C023967.2	CSPI03G29750	Wild cucumber (PI 183967)	cpimedB193
MELO3C023967.2	CmaCh14G010120	Cucurbita maxima (Rimu)	cmamedB257
MELO3C023967.2	CmoCh14G010280	Cucurbita moschata (Rifu)	cmomedB239
MELO3C023967.2	CsGy3G027580	Cucumber (Gy14) v2	cgybmedB173
MELO3C023967.2	Cla017261	Watermelon (97103) v1	medwmB344
MELO3C023967.2	ClCG10G012460	Watermelon (Charleston Gray)	medwcgB309
MELO3C023967.2	Bhi11G001188	Wax gourd	medwgoB375
MELO3C023967.2	CsaV3_3G032230	Cucumber (Chinese Long) v3	cucmedB198

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C023967.2	Cucumber (Gy14) v2	cgybmedB485
MELO3C023967.2	Cucumber (Gy14) v1	cgymedB349
MELO3C023967.2	Cucurbita maxima (Rimu)	cmamedB387
MELO3C023967.2	Cucurbita maxima (Rimu)	cmamedB489
MELO3C023967.2	Cucurbita maxima (Rimu)	cmamedB943
MELO3C023967.2	Cucurbita moschata (Rifu)	cmomedB374
MELO3C023967.2	Cucurbita moschata (Rifu)	cmomedB476
MELO3C023967.2	Cucurbita moschata (Rifu)	cmomedB932
MELO3C023967.2	Cucurbita pepo (Zucchini)	cpemedB160
MELO3C023967.2	Cucurbita pepo (Zucchini)	cpemedB360
MELO3C023967.2	Cucurbita pepo (Zucchini)	cpemedB615
MELO3C023967.2	Cucurbita pepo (Zucchini)	cpemedB673
MELO3C023967.2	Wild cucumber (PI 183967)	cpimedB544
MELO3C023967.2	Cucumber (Chinese Long) v2	cumedB528
MELO3C023967.2	Melon (DHL92) v3.6.1	medmedB084
MELO3C023967.2	Bottle gourd (USVL1VR-Ls)	lsimedB221
MELO3C023967.2	Bottle gourd (USVL1VR-Ls)	lsimedB273
MELO3C023967.2	Watermelon (97103) v1	medwmB338
MELO3C023967.2	Silver-seed gourd	carmedB0365
MELO3C023967.2	Silver-seed gourd	carmedB0460
MELO3C023967.2	Silver-seed gourd	carmedB0770
MELO3C023967.2	Silver-seed gourd	carmedB0822
MELO3C023967.2	Cucumber (Chinese Long) v3	cucmedB556
MELO3C023967.2	Watermelon (97103) v2	medwmbB305
MELO3C023967.2	Watermelon (97103) v2	medwmbB352
MELO3C023967.2	Wax gourd	medwgoB442