MELO3C023951.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C023951.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Transmembrane protein
Location	chr04 : 24401537 .. 24401920 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCAACAATGAAGAGCAAAATCTTTAAGTTCCAATTGAATTTATTTCAACCTCCAAATGAAACGCCCAAACATTTGATTGAATACACGTTGACTGATTCGCTTCAGCCCTGCAGTTCATTTACACATGATGATGTATATCCTTCAATGTTCCATTCGACACATGAACGGAGAAAGCTTTCAAAGGATGAGTGGGAAAGGCTCACCAAAGACTCAACTAAAAAGGCTTTAGAAGAACTAGTTTCTTCGCCGGATTTTACTAGGTGGCTTCTTGATAATGCAGGTAGAATCAACATACCTCCTCCCCATGCACTAGAGTTGGGAAGTGTCGAAAGTGATTTTGTTGGTTCTCATCCGACCGACAAAGTGAGTCTTACTTAA

mRNA sequence

ATGGCTTCAACAATGAAGAGCAAAATCTTTAAGTTCCAATTGAATTTATTTCAACCTCCAAATGAAACGCCCAAACATTTGATTGAATACACGTTGACTGATTCGCTTCAGCCCTGCAGTTCATTTACACATGATGATGTATATCCTTCAATGTTCCATTCGACACATGAACGGAGAAAGCTTTCAAAGGATGAGTGGGAAAGGCTCACCAAAGACTCAACTAAAAAGGCTTTAGAAGAACTAGTTTCTTCGCCGGATTTTACTAGGTGGCTTCTTGATAATGCAGGTAGAATCAACATACCTCCTCCCCATGCACTAGAGTTGGGAAGTGTCGAAAGTGATTTTGTTGGTTCTCATCCGACCGACAAAGTGAGTCTTACTTAA

Coding sequence (CDS)

ATGGCTTCAACAATGAAGAGCAAAATCTTTAAGTTCCAATTGAATTTATTTCAACCTCCAAATGAAACGCCCAAACATTTGATTGAATACACGTTGACTGATTCGCTTCAGCCCTGCAGTTCATTTACACATGATGATGTATATCCTTCAATGTTCCATTCGACACATGAACGGAGAAAGCTTTCAAAGGATGAGTGGGAAAGGCTCACCAAAGACTCAACTAAAAAGGCTTTAGAAGAACTAGTTTCTTCGCCGGATTTTACTAGGTGGCTTCTTGATAATGCAGGTAGAATCAACATACCTCCTCCCCATGCACTAGAGTTGGGAAGTGTCGAAAGTGATTTTGTTGGTTCTCATCCGACCGACAAAGTGAGTCTTACTTAA

Protein sequence

MASTMKSKIFKFQLNLFQPPNETPKHLIEYTLTDSLQPCSSFTHDDVYPSMFHSTHERRKLSKDEWERLTKDSTKKALEELVSSPDFTRWLLDNAGRINIPPPHALELGSVESDFVGSHPTDKVSLT

Homology

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BLAST of MELO3C023951.2 vs. NCBI nr
Match: XP_011652833.1 (PREDICTED: uncharacterized protein LOC105435121 [Cucumis sativus] >KGN58617.1 hypothetical protein Csa_3G701570 [Cucumis sativus])

HSP 1 Score: 172.6 bits (436), Expect = 8.8e-40
Identity = 96/134 (71.64%), Postives = 100/134 (74.63%), Query Frame = 0


Query: 1   MASTMKSKIFKFQLNLFQPPNETPKHLIEYTL-TDSLQPCSSFTH-DDVYPSMFHSTHER 60
           MAS M S IFKFQLNL Q PNET  HL+EY L TD LQ  SSFTH DDVYPSMFHSTHER
Sbjct: 362 MASIMTSNIFKFQLNLLQSPNETSNHLVEYRLRTDLLQHRSSFTHDDDVYPSMFHSTHER 421

Query: 61  RKLSKDEWERLTKDSTKKALEELVSSPDFTRWLLDNAGRINIPPPHALELGSVESDF--- 120
           RK+SKDEWERLTKDSTKKALEELVSS  FTRWLLDNAGRINIPP   +EL S        
Sbjct: 422 RKISKDEWERLTKDSTKKALEELVSSSGFTRWLLDNAGRINIPPLQGVELESXXXXXXXX 481

Query: 121 --VGSHPTDKVSLT 128
             +    TDKVS T
Sbjct: 482 XQLSLSTTDKVSFT 495

[Close]

BLAST of MELO3C023951.2 vs. NCBI nr
Match: XP_008461773.1 (PREDICTED: uncharacterized protein LOC103500297 [Cucumis melo])

HSP 1 Score: 116.3 bits (290), Expect = 7.5e-23
Identity = 66/128 (51.56%), Postives = 81/128 (63.28%), Query Frame = 0


Query: 1   MASTMKSKIFKFQL------NLFQPPNETPK--HLIEYTLTDS----------------L 60
           + S+M  +IFKF+        LF  PN+TPK  H+++    D+                +
Sbjct: 390 LTSSMLRRIFKFRFRRRLYKKLFISPNKTPKISHMLDMPCLDAQDDQPRINRSQSNNLLI 449

Query: 61  QPCSSF-THDDVYPSMFHSTHERRKLSKDEWERLTKDSTKKALEELVSSPDFTRWLLDNA 104
           Q CSSF   DDVYPSMFHST ++RK SKDEWE+ TKDSTKKALE L+SSPDF+RWL DNA
Sbjct: 450 QSCSSFELDDDVYPSMFHSTPKQRKFSKDEWEKFTKDSTKKALEGLISSPDFSRWLADNA 509

[Close]

BLAST of MELO3C023951.2 vs. NCBI nr
Match: XP_011651793.1 (PREDICTED: uncharacterized protein LOC101210632 isoform X1 [Cucumis sativus])

HSP 1 Score: 103.6 bits (257), Expect = 5.0e-19
Identity = 49/67 (73.13%), Postives = 53/67 (79.10%), Query Frame = 0


Query: 36  LQPCSSFTHDDVYPSMFHSTHERRKLSKDEWERLTKDSTKKALEELVSSPDFTRWLLDNA 95
           LQPC S  H DVYPS FHST ERR  SKDEWE+ TKDSTKKALE LVSSPDF+ WL+D A
Sbjct: 463 LQPCHSSKHSDVYPSTFHSTSERRNFSKDEWEKFTKDSTKKALEGLVSSPDFSSWLVDRA 522

Query: 96  GRINIPP 103
            RI+I P
Sbjct: 523 DRISITP 529

[Close]

BLAST of MELO3C023951.2 vs. NCBI nr
Match: XP_016902769.1 (PREDICTED: nuclear envelope integral membrane protein 1 isoform X1 [Cucumis melo])

HSP 1 Score: 102.1 bits (253), Expect = 1.5e-18
Identity = 49/67 (73.13%), Postives = 53/67 (79.10%), Query Frame = 0


Query: 36  LQPCSSFTHDDVYPSMFHSTHERRKLSKDEWERLTKDSTKKALEELVSSPDFTRWLLDNA 95
           LQ C S  H DVYPS FHST ERRK SKDEWE+ TKDSTKKALE LVSSPDF+ WL+D A
Sbjct: 463 LQSCDSSKHGDVYPSTFHSTPERRKFSKDEWEKFTKDSTKKALEGLVSSPDFSSWLVDRA 522

Query: 96  GRINIPP 103
            RI+I P
Sbjct: 523 DRISITP 529

[Close]

BLAST of MELO3C023951.2 vs. NCBI nr
Match: XP_022149433.1 (uncharacterized protein LOC111017862 [Momordica charantia])

HSP 1 Score: 95.9 bits (237), Expect = 1.1e-16
Identity = 52/91 (57.14%), Postives = 63/91 (69.23%), Query Frame = 0


Query: 13  QLNLFQPPN-ETPKHLIEYTLTDSLQPCSSFTHDDVYPSMFHSTHERRKLSKDEWERLTK 72
           +  L  PP+ E P+         +LQ CSS +  DVYPS FHST  R+K SK EWE+ TK
Sbjct: 377 EFTLRSPPSYEDPRFYRSQDRKFALQSCSS-SKRDVYPSTFHSTPGRKKFSKHEWEKFTK 436

Query: 73  DSTKKALEELVSSPDFTRWLLDNAGRINIPP 103
           DST+KALEELVSSPDF+ WL+DNA RI+I P
Sbjct: 437 DSTEKALEELVSSPDFSSWLVDNADRISITP 466

[Close]

BLAST of MELO3C023951.2 vs. TAIR10
Match: AT5G67610.2 (Uncharacterized conserved protein (DUF2215))

HSP 1 Score: 79.0 bits (193), Expect = 2.4e-15
Identity = 35/60 (58.33%), Postives = 46/60 (76.67%), Query Frame = 0


Query: 43  THDDVYPSMFHSTHERRKLSKDEWERLTKDSTKKALEELVSSPDFTRWLLDNAGRINIPP 102
           +  D +PS FH T ER +L+K+EW++LTKDST KA++ELVSSPDF +W   NA RIN+ P
Sbjct: 422 SESDTFPSSFHKTPERSQLTKEEWKKLTKDSTTKAVQELVSSPDFGKWAAVNADRINVTP 481

[Close]

BLAST of MELO3C023951.2 vs. TAIR10
Match: AT3G49840.1 (Uncharacterized conserved protein (DUF2215))

HSP 1 Score: 60.1 bits (144), Expect = 1.2e-09
Identity = 30/61 (49.18%), Postives = 41/61 (67.21%), Query Frame = 0


Query: 43  THDDVYPSMFHSTHE-RRKLSKDEWERLTKDSTKKALEELVSSPDFTRWLLDNAGRINIP 102
           +  D++PS FH T E RRKL+K+E ++    ST+ AL+ELVSSP F  W + NA RI + 
Sbjct: 390 SESDIFPSSFHKTPEGRRKLTKEELQKXXXXSTENALKELVSSPGFGEWAVKNAKRITVN 449

[Close]

BLAST of MELO3C023951.2 vs. TAIR10
Match: AT1G28760.1 (Uncharacterized conserved protein (DUF2215))

HSP 1 Score: 58.9 bits (141), Expect = 2.6e-09
Identity = 31/73 (42.47%), Postives = 50/73 (68.49%), Query Frame = 0


Query: 48  YPSMFHSTHERRKLSKDEWERLTKDSTKKALEELVSSPDFTRWLLDNAGRINIPPPHAL- 107
           Y S FH+T  R+++SK E++ LT+++T++A+  L +SP F+ WL+++A RI + P  +  
Sbjct: 396 YYSTFHTTPNRKRMSKREYDELTQETTREAMAGLAASPGFSDWLVEHADRIKLLPTDSSY 455

Query: 108 --ELGSVESDFVG 118
             ELGS ESD  G
Sbjct: 456 DDELGS-ESDSTG 467

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BLAST of MELO3C023951.2 vs. TrEMBL
Match: tr|A0A0A0LD37|A0A0A0LD37_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G701570 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 5.8e-40
Identity = 96/134 (71.64%), Postives = 100/134 (74.63%), Query Frame = 0


Query: 1   MASTMKSKIFKFQLNLFQPPNETPKHLIEYTL-TDSLQPCSSFTH-DDVYPSMFHSTHER 60
           MAS M S IFKFQLNL Q PNET  HL+EY L TD LQ  SSFTH DDVYPSMFHSTHER
Sbjct: 362 MASIMTSNIFKFQLNLLQSPNETSNHLVEYRLRTDLLQHRSSFTHDDDVYPSMFHSTHER 421

Query: 61  RKLSKDEWERLTKDSTKKALEELVSSPDFTRWLLDNAGRINIPPPHALELGSVESDF--- 120
           RK+SKDEWERLTKDSTKKALEELVSS  FTRWLLDNAGRINIPP   +EL S        
Sbjct: 422 RKISKDEWERLTKDSTKKALEELVSSSGFTRWLLDNAGRINIPPLQGVELESXXXXXXXX 481

Query: 121 --VGSHPTDKVSLT 128
             +    TDKVS T
Sbjct: 482 XQLSLSTTDKVSFT 495

[Close]

BLAST of MELO3C023951.2 vs. TrEMBL
Match: tr|A0A1S3CFC0|A0A1S3CFC0_CUCME (uncharacterized protein LOC103500297 OS=Cucumis melo OX=3656 GN=LOC103500297 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 5.0e-23
Identity = 66/128 (51.56%), Postives = 81/128 (63.28%), Query Frame = 0


Query: 1   MASTMKSKIFKFQL------NLFQPPNETPK--HLIEYTLTDS----------------L 60
           + S+M  +IFKF+        LF  PN+TPK  H+++    D+                +
Sbjct: 390 LTSSMLRRIFKFRFRRRLYKKLFISPNKTPKISHMLDMPCLDAQDDQPRINRSQSNNLLI 449

Query: 61  QPCSSF-THDDVYPSMFHSTHERRKLSKDEWERLTKDSTKKALEELVSSPDFTRWLLDNA 104
           Q CSSF   DDVYPSMFHST ++RK SKDEWE+ TKDSTKKALE L+SSPDF+RWL DNA
Sbjct: 450 QSCSSFELDDDVYPSMFHSTPKQRKFSKDEWEKFTKDSTKKALEGLISSPDFSRWLADNA 509

[Close]

BLAST of MELO3C023951.2 vs. TrEMBL
Match: tr|A0A1S4E3G6|A0A1S4E3G6_CUCME (nuclear envelope integral membrane protein 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500299 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 9.7e-19
Identity = 49/67 (73.13%), Postives = 53/67 (79.10%), Query Frame = 0


Query: 36  LQPCSSFTHDDVYPSMFHSTHERRKLSKDEWERLTKDSTKKALEELVSSPDFTRWLLDNA 95
           LQ C S  H DVYPS FHST ERRK SKDEWE+ TKDSTKKALE LVSSPDF+ WL+D A
Sbjct: 463 LQSCDSSKHGDVYPSTFHSTPERRKFSKDEWEKFTKDSTKKALEGLVSSPDFSSWLVDRA 522

Query: 96  GRINIPP 103
            RI+I P
Sbjct: 523 DRISITP 529

[Close]

BLAST of MELO3C023951.2 vs. TrEMBL
Match: tr|M0ZUT7|M0ZUT7_SOLTU (Uncharacterized protein OS=Solanum tuberosum OX=4113 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 9.4e-14
Identity = 38/67 (56.72%), Postives = 54/67 (80.60%), Query Frame = 0


Query: 36  LQPCSSFTHDDVYPSMFHSTHERRKLSKDEWERLTKDSTKKALEELVSSPDFTRWLLDNA 95
           L+P S  + +D + S FH+T ER+KLSKDEW+++TKD+TKKA+EELVSSPDF++W + +A
Sbjct: 405 LKPRSLLSENDTFYSTFHNTPERKKLSKDEWDKITKDTTKKAMEELVSSPDFSKWAVAHA 464

Query: 96  GRINIPP 103
            RI + P
Sbjct: 465 DRITLAP 471

[Close]

BLAST of MELO3C023951.2 vs. TrEMBL
Match: tr|M0ZUT9|M0ZUT9_SOLTU (Uncharacterized protein OS=Solanum tuberosum OX=4113 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 9.4e-14
Identity = 38/67 (56.72%), Postives = 54/67 (80.60%), Query Frame = 0


Query: 36  LQPCSSFTHDDVYPSMFHSTHERRKLSKDEWERLTKDSTKKALEELVSSPDFTRWLLDNA 95
           L+P S  + +D + S FH+T ER+KLSKDEW+++TKD+TKKA+EELVSSPDF++W + +A
Sbjct: 392 LKPRSLLSENDTFYSTFHNTPERKKLSKDEWDKITKDTTKKAMEELVSSPDFSKWAVAHA 451

Query: 96  GRINIPP 103
            RI + P
Sbjct: 452 DRITLAP 458

The following BLAST results are available for this feature:

BLAST of MELO3C023951.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011652833.1	8.8e-40	71.64	PREDICTED: uncharacterized protein LOC105435121 [Cucumis sativus] >KGN58617.1 hy...	[more]
XP_008461773.1	7.5e-23	51.56	PREDICTED: uncharacterized protein LOC103500297 [Cucumis melo]	[more]
XP_011651793.1	5.0e-19	73.13	PREDICTED: uncharacterized protein LOC101210632 isoform X1 [Cucumis sativus]	[more]
XP_016902769.1	1.5e-18	73.13	PREDICTED: nuclear envelope integral membrane protein 1 isoform X1 [Cucumis melo...	[more]
XP_022149433.1	1.1e-16	57.14	uncharacterized protein LOC111017862 [Momordica charantia]	[more]

BLAST of MELO3C023951.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G67610.2	2.4e-15	58.33	Uncharacterized conserved protein (DUF2215)	[more]
AT3G49840.1	1.2e-09	49.18	Uncharacterized conserved protein (DUF2215)	[more]
AT1G28760.1	2.6e-09	42.47	Uncharacterized conserved protein (DUF2215)	[more]

BLAST of MELO3C023951.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C023951.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LD37\|A0A0A0LD37_CUCSA	5.8e-40	71.64	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G701570 PE=4 SV=1	[more]
tr\|A0A1S3CFC0\|A0A1S3CFC0_CUCME	5.0e-23	51.56	uncharacterized protein LOC103500297 OS=Cucumis melo OX=3656 GN=LOC103500297 PE=...	[more]
tr\|A0A1S4E3G6\|A0A1S4E3G6_CUCME	9.7e-19	73.13	nuclear envelope integral membrane protein 1 isoform X1 OS=Cucumis melo OX=3656 ...	[more]
tr\|M0ZUT7\|M0ZUT7_SOLTU	9.4e-14	56.72	Uncharacterized protein OS=Solanum tuberosum OX=4113 PE=4 SV=1	[more]
tr\|M0ZUT9\|M0ZUT9_SOLTU	9.4e-14	56.72	Uncharacterized protein OS=Solanum tuberosum OX=4113 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C023951.2.1	MELO3C023951.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31587	FAMILY NOT NAMED	coord: 40..107

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C023951.2	Bhi11G001207	Wax gourd	medwgoB375

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C023951.2	Cucumber (Gy14) v2	cgybmedB173
MELO3C023951.2	Cucumber (Gy14) v1	cgymedB312
MELO3C023951.2	Cucurbita maxima (Rimu)	cmamedB257
MELO3C023951.2	Cucurbita maxima (Rimu)	cmamedB489
MELO3C023951.2	Cucurbita moschata (Rifu)	cmomedB239
MELO3C023951.2	Cucurbita moschata (Rifu)	cmomedB374
MELO3C023951.2	Cucurbita moschata (Rifu)	cmomedB476
MELO3C023951.2	Cucurbita pepo (Zucchini)	cpemedB615
MELO3C023951.2	Cucurbita pepo (Zucchini)	cpemedB673
MELO3C023951.2	Wild cucumber (PI 183967)	cpimedB193
MELO3C023951.2	Cucumber (Chinese Long) v2	cumedB193
MELO3C023951.2	Melon (DHL92) v3.6.1	medmedB084
MELO3C023951.2	Bottle gourd (USVL1VR-Ls)	lsimedB221
MELO3C023951.2	Bottle gourd (USVL1VR-Ls)	lsimedB273
MELO3C023951.2	Watermelon (Charleston Gray)	medwcgB309
MELO3C023951.2	Watermelon (97103) v1	medwmB344
MELO3C023951.2	Silver-seed gourd	carmedB0365
MELO3C023951.2	Silver-seed gourd	carmedB0460
MELO3C023951.2	Silver-seed gourd	carmedB0770
MELO3C023951.2	Silver-seed gourd	carmedB0822
MELO3C023951.2	Cucumber (Chinese Long) v3	cucmedB198
MELO3C023951.2	Cucumber (Chinese Long) v3	cucmedB556
MELO3C023951.2	Watermelon (97103) v2	medwmbB305
MELO3C023951.2	Wax gourd	medwgoB442