MELO3C023950.2 (gene) Melon (DHL92) v3.6.1

NameMELO3C023950.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionTransmembrane protein
Locationchr04 : 24405547 .. 24406758 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACCTCCGTCCATTGACCGGTCACTGTTTGAGATCTGAGAAGAAAATAATGGCGCTGAATGCAGTGGACGTCACCGTATTATGATTACGATCAGAACTCCCAAACAAGAAACCTAATTTCATCCTCTTCTTGGCCGACAAAGACCCTTCTGCCTCTCTCAGCTTGTGTCCCGGTATGCTCAATTTCTTTTTTCCACCCAGTTATGAGCAACATTTAGTTTCGTTATTTGATTGATCAAATACTTTAGGTCTGCGAGAGTATGAATTTCTTGTAGTTTGGAATTTCTTAGACCGTCTCTAGTTCATACTTTGAGCTTTACATCTATAATGAAATGTCTAGCTAGATGGAAAAATCACCATAGTATTTGGTGCATTGTGAGTTTTTAGGAAGCAGTACCCTTGCTAGATTTCTCCTTCTACTGTTAATGATCCCTTTTCAGGAGATGAAGCTTCTGCTTAGTGGTCGGAATAACTCACTTGGAATTTTTCTATATACATACATGGCTGGTCTGGGATCTTTTTTCCTTCATTACGTACTTGTATTATAGGAGCAAATACTTTTGGAAATGAGCATAACTATAAGTAAGGACATGCTTAATCCTCTAGCACTAGTAATATTTCTGTTGGCTTCTGTTTGTCGTCTGAATGGAACATGGTTGGGCATTTGGGTAGACCACAAGTTTATCCATTATGAAGTTGAAGATGGAATAGTTGATAAAAGTATATCATTTTTTATCACATGGTCCATTAGAATTTTGGCTATTTTTCTTATTCTTCATTGTTCCTTAGATCCCCTGTTGGCACAGGAGCTCTGATATGTAGAATGATGACTTCATCAATGTTGATAAAAATCTTGAAGTTCATGTCGAATTTATTCAAATCTTCAAAGGAAACGTTGAAGACTAATATGCCTCGTTTGAATGCTTATGAAGACCCGAGGTTCAATAGATCTGAAAGTAGAAACTTCTTGGTTCAATCCTGTAGTTCTTTTATACCTGGCGATGTATATCCTTCAACATTCTATTCCATACCTGAACGGAGAAAATTTTCAAAGGAAGAATGGAAAAAGTTCACCAAGGACTCAACTAAAAAGGCTCTGGAAGGACTAGCTTTTTCACCAGATTTTACTAGGTGGTTTGTTGATAATGCAGATGGAATCAACATAACTCCCCGTGCAATAGAGTTGAGAAGTATCAAAAAATGACCCTCTTGGT

mRNA sequence

ACCTCCGTCCATTGACCGGTCACTGTTTGAGATCTGAGAAGAAAATAATGGCGCTGAATGCAGTGGACGTCACCGTATTATGATTACGATCAGAACTCCCAAACAAGAAACCTAATTTCATCCTCTTCTTGGCCGACAAAGACCCTTCTGCCTCTCTCAGCTTGTGTCCCGATCCCCTGTTGGCACAGGAGCTCTGATATGTAGAATGATGACTTCATCAATGTTGATAAAAATCTTGAAGTTCATGTCGAATTTATTCAAATCTTCAAAGGAAACGTTGAAGACTAATATGCCTCGTTTGAATGCTTATGAAGACCCGAGGTTCAATAGATCTGAAAGTAGAAACTTCTTGGTTCAATCCTGTAGTTCTTTTATACCTGGCGATGTATATCCTTCAACATTCTATTCCATACCTGAACGGAGAAAATTTTCAAAGGAAGAATGGAAAAAGTTCACCAAGGACTCAACTAAAAAGGCTCTGGAAGGACTAGCTTTTTCACCAGATTTTACTAGGTGGTTTGTTGATAATGCAGATGGAATCAACATAACTCCCCGTGCAATAGAGTTGAGAAGTATCAAAAAATGACCCTCTTGGT

Coding sequence (CDS)

ATGATGACTTCATCAATGTTGATAAAAATCTTGAAGTTCATGTCGAATTTATTCAAATCTTCAAAGGAAACGTTGAAGACTAATATGCCTCGTTTGAATGCTTATGAAGACCCGAGGTTCAATAGATCTGAAAGTAGAAACTTCTTGGTTCAATCCTGTAGTTCTTTTATACCTGGCGATGTATATCCTTCAACATTCTATTCCATACCTGAACGGAGAAAATTTTCAAAGGAAGAATGGAAAAAGTTCACCAAGGACTCAACTAAAAAGGCTCTGGAAGGACTAGCTTTTTCACCAGATTTTACTAGGTGGTTTGTTGATAATGCAGATGGAATCAACATAACTCCCCGTGCAATAGAGTTGAGAAGTATCAAAAAATGA

Protein sequence

MMTSSMLIKILKFMSNLFKSSKETLKTNMPRLNAYEDPRFNRSESRNFLVQSCSSFIPGDVYPSTFYSIPERRKFSKEEWKKFTKDSTKKALEGLAFSPDFTRWFVDNADGINITPRAIELRSIKK
BLAST of MELO3C023950.2 vs. NCBI nr
Match: XP_008461773.1 (PREDICTED: uncharacterized protein LOC103500297 [Cucumis melo])

HSP 1 Score: 116.7 bits (291), Expect = 5.7e-23
Identity = 68/128 (53.12%), Postives = 83/128 (64.84%), Query Frame = 0

Query: 1   MMTSSMLIKILKF------MSNLFKSSKETLK----TNMPRLNAYED-PRFNRSESRNFL 60
           ++TSSML +I KF         LF S  +T K     +MP L+A +D PR NRS+S N L
Sbjct: 389 LLTSSMLRRIFKFRFRRRLYKKLFISPNKTPKISHMLDMPCLDAQDDQPRINRSQSNNLL 448

Query: 61  VQSCSSF-IPGDVYPSTFYSIPERRKFSKEEWXXXXXXXXKKALEGLAFSPDFTRWFVDN 117
           +QSCSSF +  DVYPS F+S P++RKFSK+EW        KKALEGL  SPDF+RW  DN
Sbjct: 449 IQSCSSFELDDDVYPSMFHSTPKQRKFSKDEWEKFTKDSTKKALEGLISSPDFSRWLADN 508

BLAST of MELO3C023950.2 vs. NCBI nr
Match: XP_016902769.1 (PREDICTED: nuclear envelope integral membrane protein 1 isoform X1 [Cucumis melo])

HSP 1 Score: 114.0 bits (284), Expect = 3.7e-22
Identity = 57/103 (55.34%), Postives = 69/103 (66.99%), Query Frame = 0

Query: 24  TLKTNMPRLNAYEDPRFNRSESRNFLVQSCSSFIPGDVYPSTFYSIPERRKFSKEEWXXX 83
           TLKT       Y++PRF RS++R FL+QSC S   GDVYPSTF+S PERRKFSK+EW   
Sbjct: 441 TLKTT----PLYKEPRFYRSQNRKFLLQSCDSSKHGDVYPSTFHSTPERRKFSKDEWEKF 500

Query: 84  XXXXXKKALEGLAFSPDFTRWFVDNADGINITPRAIELRSIKK 127
                KKALEGL  SPDF+ W VD AD I+ITP++      +K
Sbjct: 501 TKDSTKKALEGLVSSPDFSSWLVDRADRISITPQSSRAEKRRK 539

BLAST of MELO3C023950.2 vs. NCBI nr
Match: XP_023532922.1 (uncharacterized protein LOC111794944 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 109.0 bits (271), Expect = 1.2e-20
Identity = 67/140 (47.86%), Postives = 81/140 (57.86%), Query Frame = 0

Query: 1   MMTSSMLIKILKF------MSNLFKSSKETLKT----NMPRLN------------AYEDP 60
           +M SS+L +  KF        NLFKS K  LK     + PR +            +YEDP
Sbjct: 330 IMASSILRRTFKFRFLRRQYKNLFKSPKRKLKRSHIFDKPRFDDSDDELAMKSPLSYEDP 389

Query: 61  RFNRSESRNFLVQSCSSFIPGDVYPSTFYSIPERRKFSKEEWXXXXXXXXKKALEGLAFS 119
            F RS+ RNF +QSC S    D YPSTF+S P RR+FSK+EW        +KALEGL  S
Sbjct: 390 GFYRSQDRNFALQSC-SLSERDEYPSTFHSTPGRREFSKDEWKRFTKDSTEKALEGLVSS 449

BLAST of MELO3C023950.2 vs. NCBI nr
Match: XP_022149433.1 (uncharacterized protein LOC111017862 [Momordica charantia])

HSP 1 Score: 108.2 bits (269), Expect = 2.0e-20
Identity = 67/148 (45.27%), Postives = 85/148 (57.43%), Query Frame = 0

Query: 1   MMTSSMLIKILKF------MSNLFKSSKETLK----TNMPRLN------------AYEDP 60
           +M SS+L KI K         N FKS K+  K    +++PRL+            +YEDP
Sbjct: 330 VMASSILRKIFKLRFLRRQYKNFFKSPKKMHKRSHISDLPRLDDSYDEFTLRSPPSYEDP 389

Query: 61  RFNRSESRNFLVQSCSSFIPGDVYPSTFYSIPERRKFSKEEWXXXXXXXXKKALEGLAFS 120
           RF RS+ R F +QSCSS    DVYPSTF+S P R+KFSK EW        +KALE L  S
Sbjct: 390 RFYRSQDRKFALQSCSS-SKRDVYPSTFHSTPGRKKFSKHEWEKFTKDSTEKALEELVSS 449

Query: 121 PDFTRWFVDNADGINITPRAIELRSIKK 127
           PDF+ W VDNAD I+ITP++      +K
Sbjct: 450 PDFSSWLVDNADRISITPQSSRAEKRRK 476

BLAST of MELO3C023950.2 vs. NCBI nr
Match: XP_023006880.1 (uncharacterized protein LOC111499541 [Cucurbita maxima] >XP_023006881.1 uncharacterized protein LOC111499541 [Cucurbita maxima] >XP_023006882.1 uncharacterized protein LOC111499541 [Cucurbita maxima])

HSP 1 Score: 106.3 bits (264), Expect = 7.7e-20
Identity = 65/140 (46.43%), Postives = 81/140 (57.86%), Query Frame = 0

Query: 1   MMTSSMLIKILKF------MSNLFKSSKETLK----TNMPRLN------------AYEDP 60
           +M SS+L +  K         NLFKS K  LK    ++ PR +            +YEDP
Sbjct: 330 IMASSILRRTFKLRFLRRQYKNLFKSPKRKLKRSHISDTPRFDDSDDELAMKSPLSYEDP 389

Query: 61  RFNRSESRNFLVQSCSSFIPGDVYPSTFYSIPERRKFSKEEWXXXXXXXXKKALEGLAFS 119
           +F  S+ RNF +QSC S    D YPSTF+S P RR+FSK+EW        +KALEGL  S
Sbjct: 390 KFYGSQDRNFALQSC-SLSERDEYPSTFHSTPGRREFSKDEWKRFTKDSTEKALEGLVSS 449

BLAST of MELO3C023950.2 vs. TAIR10
Match: AT5G67610.2 (Uncharacterized conserved protein (DUF2215))

HSP 1 Score: 63.2 bits (152), Expect = 1.4e-10
Identity = 27/58 (46.55%), Postives = 36/58 (62.07%), Query Frame = 0

Query: 60  DVYPSTFYSIPERRKFSKEEWXXXXXXXXKKALEGLAFSPDFTRWFVDNADGINITPR 118
           D +PS+F+  PER + +KEEW         KA++ L  SPDF +W   NAD IN+TPR
Sbjct: 425 DTFPSSFHKTPERSQLTKEEWKKLTKDSTTKAVQELVSSPDFGKWAAVNADRINVTPR 482

BLAST of MELO3C023950.2 vs. TAIR10
Match: AT1G28760.1 (Uncharacterized conserved protein (DUF2215))

HSP 1 Score: 55.5 bits (132), Expect = 2.8e-08
Identity = 30/84 (35.71%), Postives = 46/84 (54.76%), Query Frame = 0

Query: 38  PRFNRSESRNFLVQSCSSF-----IPGDVYPSTFYSIPERRKFSKEEWXXXXXXXXKKAL 97
           P ++ S S + +V S SS      I    Y STF++ P R++ SK E+        ++A+
Sbjct: 367 PSYSGSPSYDVIVSSPSSVNRRIPIGNQDYYSTFHTTPNRKRMSKREYDELTQETTREAM 426

Query: 98  EGLAFSPDFTRWFVDNADGINITP 117
            GLA SP F+ W V++AD I + P
Sbjct: 427 AGLAASPGFSDWLVEHADRIKLLP 450

BLAST of MELO3C023950.2 vs. TAIR10
Match: AT3G49840.1 (Uncharacterized conserved protein (DUF2215))

HSP 1 Score: 48.1 bits (113), Expect = 4.5e-06
Identity = 28/58 (48.28%), Postives = 36/58 (62.07%), Query Frame = 0

Query: 60  DVYPSTFYSIPE-RRKFSKEEWXXXXXXXXKKALEGLAFSPDFTRWFVDNADGINITP 117
           D++PS+F+  PE RRK +KEE   XXXX  + AL+ L  SP F  W V NA  I + P
Sbjct: 393 DIFPSSFHKTPEGRRKLTKEELQKXXXXSTENALKELVSSPGFGEWAVKNAKRITVNP 450

BLAST of MELO3C023950.2 vs. TrEMBL
Match: tr|A0A1S3CFC0|A0A1S3CFC0_CUCME (uncharacterized protein LOC103500297 OS=Cucumis melo OX=3656 GN=LOC103500297 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 3.8e-23
Identity = 68/128 (53.12%), Postives = 83/128 (64.84%), Query Frame = 0

Query: 1   MMTSSMLIKILKF------MSNLFKSSKETLK----TNMPRLNAYED-PRFNRSESRNFL 60
           ++TSSML +I KF         LF S  +T K     +MP L+A +D PR NRS+S N L
Sbjct: 389 LLTSSMLRRIFKFRFRRRLYKKLFISPNKTPKISHMLDMPCLDAQDDQPRINRSQSNNLL 448

Query: 61  VQSCSSF-IPGDVYPSTFYSIPERRKFSKEEWXXXXXXXXKKALEGLAFSPDFTRWFVDN 117
           +QSCSSF +  DVYPS F+S P++RKFSK+EW        KKALEGL  SPDF+RW  DN
Sbjct: 449 IQSCSSFELDDDVYPSMFHSTPKQRKFSKDEWEKFTKDSTKKALEGLISSPDFSRWLADN 508

BLAST of MELO3C023950.2 vs. TrEMBL
Match: tr|A0A1S4E3G6|A0A1S4E3G6_CUCME (nuclear envelope integral membrane protein 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500299 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.4e-22
Identity = 57/103 (55.34%), Postives = 69/103 (66.99%), Query Frame = 0

Query: 24  TLKTNMPRLNAYEDPRFNRSESRNFLVQSCSSFIPGDVYPSTFYSIPERRKFSKEEWXXX 83
           TLKT       Y++PRF RS++R FL+QSC S   GDVYPSTF+S PERRKFSK+EW   
Sbjct: 441 TLKTT----PLYKEPRFYRSQNRKFLLQSCDSSKHGDVYPSTFHSTPERRKFSKDEWEKF 500

Query: 84  XXXXXKKALEGLAFSPDFTRWFVDNADGINITPRAIELRSIKK 127
                KKALEGL  SPDF+ W VD AD I+ITP++      +K
Sbjct: 501 TKDSTKKALEGLVSSPDFSSWLVDRADRISITPQSSRAEKRRK 539

BLAST of MELO3C023950.2 vs. TrEMBL
Match: tr|A0A2H5PCL5|A0A2H5PCL5_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_124070 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 3.0e-12
Identity = 49/125 (39.20%), Postives = 68/125 (54.40%), Query Frame = 0

Query: 12  KFMSNLFKSSKETLKTNMPRLNA-----YEDP--RFNRSESRNFLVQSCSSFIPG----- 71
           K + N F+ S+  L    P  N+     Y+ P  +F R  S+ F + SC+S + G     
Sbjct: 261 KIVKNFFRHSQ--LPDLSPFQNSCDEYMYKSPEDKFVRRWSKCFSLSSCNSPLQGHSGSS 320

Query: 72  -------DVYPSTFYSIPERRKFSKEEWXXXXXXXXKKALEGLAFSPDFTRWFVDNADGI 118
                  ++YPS F+S PERRKFSKEEW        ++ALEGL  SPDF++W   NA+ I
Sbjct: 321 PRKLSDSEIYPSAFHSTPERRKFSKEEWERFTRDSTERALEGLVSSPDFSKWVAANAERI 380

BLAST of MELO3C023950.2 vs. TrEMBL
Match: tr|V4SFJ3|V4SFJ3_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10025460mg PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 3.9e-12
Identity = 49/128 (38.28%), Postives = 68/128 (53.12%), Query Frame = 0

Query: 9   KILKFMSNLFKSSKETLKTNMPRLNA-----YEDP--RFNRSESRNFLVQSCSSFIPG-- 68
           K  K + N F+ S+  L    P  N+     Y+ P  +F R  S+ F + SC+S + G  
Sbjct: 351 KKFKIVKNFFRHSQ--LPDLSPFQNSCDEYMYKSPEDKFVRRWSKRFSLSSCNSPLQGHS 410

Query: 69  ----------DVYPSTFYSIPERRKFSKEEWXXXXXXXXKKALEGLAFSPDFTRWFVDNA 118
                     ++YPS F+S PERR FSKEEW        ++ALEGL  SPDF++W   NA
Sbjct: 411 GSSPRKLSDSEIYPSAFHSTPERRNFSKEEWERFTRDSTERALEGLVSSPDFSKWVAANA 470

BLAST of MELO3C023950.2 vs. TrEMBL
Match: tr|A0A2P4L8V3|A0A2P4L8V3_QUESU (Nuclear envelope integral membrane protein 1 OS=Quercus suber OX=58331 GN=CFP56_63861 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 8.7e-12
Identity = 52/156 (33.33%), Postives = 81/156 (51.92%), Query Frame = 0

Query: 1   MMTSSMLIKILKFMSNLFKSSKETLKTN-----MPRLNAY--------------EDPRFN 60
           +M SS L +I +F+  L+K++ ++ K N     +P L+A+              EDP F 
Sbjct: 332 IMISSSLRRIFRFIRRLYKNTVKSPKKNRRRSRVPDLSAFEDSHDKYTYKVQSDEDPIFL 391

Query: 61  RSESRNFLVQSCSSFIPG------------DVYPSTFYSIPERRKFSKEEWXXXXXXXXK 120
              ++NF + SC S   G            ++YPSTF++ PE++ FSK EW        +
Sbjct: 392 APRTKNFTLASCKSAERGFSRTSPCQQSDSELYPSTFHTTPEKKIFSKAEWKNFTRHSTE 451

Query: 121 KALEGLAFSPDFTRWFVDNADGINI---TPRAIELR 123
           KA+E L  SPDF++W + NA+ I +   TPRA + R
Sbjct: 452 KAMEELVSSPDFSKWLIGNAERITVDPNTPRADKRR 487

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008461773.15.7e-2353.13PREDICTED: uncharacterized protein LOC103500297 [Cucumis melo][more]
XP_016902769.13.7e-2255.34PREDICTED: nuclear envelope integral membrane protein 1 isoform X1 [Cucumis melo... [more]
XP_023532922.11.2e-2047.86uncharacterized protein LOC111794944 [Cucurbita pepo subsp. pepo][more]
XP_022149433.12.0e-2045.27uncharacterized protein LOC111017862 [Momordica charantia][more]
XP_023006880.17.7e-2046.43uncharacterized protein LOC111499541 [Cucurbita maxima] >XP_023006881.1 uncharac... [more]
Match NameE-valueIdentityDescription
AT5G67610.21.4e-1046.55Uncharacterized conserved protein (DUF2215)[more]
AT1G28760.12.8e-0835.71Uncharacterized conserved protein (DUF2215)[more]
AT3G49840.14.5e-0648.28Uncharacterized conserved protein (DUF2215)[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A1S3CFC0|A0A1S3CFC0_CUCME3.8e-2353.13uncharacterized protein LOC103500297 OS=Cucumis melo OX=3656 GN=LOC103500297 PE=... [more]
tr|A0A1S4E3G6|A0A1S4E3G6_CUCME2.4e-2255.34nuclear envelope integral membrane protein 1 isoform X1 OS=Cucumis melo OX=3656 ... [more]
tr|A0A2H5PCL5|A0A2H5PCL5_CITUN3.0e-1239.20Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_124070 PE=4 SV=1[more]
tr|V4SFJ3|V4SFJ3_9ROSI3.9e-1238.28Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10025460mg PE=4 ... [more]
tr|A0A2P4L8V3|A0A2P4L8V3_QUESU8.7e-1233.33Nuclear envelope integral membrane protein 1 OS=Quercus suber OX=58331 GN=CFP56_... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C023950.2.1MELO3C023950.2.1mRNA


Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR31587FAMILY NOT NAMEDcoord: 22..118

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None