MELO3C023928.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C023928.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	UDP-N-acetylmuramate--L-alanine ligase
Location	chr04 : 24710751 .. 24711466 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAGCTCTCTCTCTTACCAACATGGCGGCTAAGACGGTCAAAGAACCTCCGTCAATAGCTTCCTCCCTCTATAAAAAACCCTCAAAACCTCCATTTTCTGTATCCAATTTCACTCCCATCTTTTTCATCCATCGACTCAACATTTCATCTTAGATTTTTCATCCTCAAATCCTTCACTATGACGCCGATTTCCGAAACCGATGCCGGCGAGATGTTCGTCAGAATCGCCATGTTCGTCTTTGTTCAGCTTCTTGTCTATTTGATTCTCTCCAAATCCTCCAACCTCTTCTCCAACGACCAGAAATTGAGATCTCTCAGCTTTAAACCGGCTCGTTCCGTCAGTATTCGCCGGTTTCTGGCTGCTCTTTCTGATCTTCCTCCCGGCGGTGAGCTTTCTCCGTCGTCTGTTCGTCGCGGTCGTTCCGATGACGGTTGCAAGTTGTAAAGAGTCGAATCGATCGGATCGAATTGAATTGGTTCCGATTGACATTTTCTGGGTTAGTCATGTAAAGTGAAAAAAGAGTAGGGGGTGATTTATGTTATTTGTTAAAAGTAGAGGGGTTGGTTTGGTGAATTCTGATTATTTGTATTTGTTATTTGAATGATTCTTTTGTTCTTTGGTAATGGTAATGCAAATTATTTGACTTATTCATCCATTTAAAACTATTTTCAATCTTATTATTTTTTCTTAATATTCCAAGTATTATCAATTTCC

mRNA sequence

CAAAGCTCTCTCTCTTACCAACATGGCGGCTAAGACGGTCAAAGAACCTCCGTCAATAGCTTCCTCCCTCTATAAAAAACCCTCAAAACCTCCATTTTCTGTATCCAATTTCACTCCCATCTTTTTCATCCATCGACTCAACATTTCATCTTAGATTTTTCATCCTCAAATCCTTCACTATGACGCCGATTTCCGAAACCGATGCCGGCGAGATGTTCGTCAGAATCGCCATGTTCGTCTTTGTTCAGCTTCTTGTCTATTTGATTCTCTCCAAATCCTCCAACCTCTTCTCCAACGACCAGAAATTGAGATCTCTCAGCTTTAAACCGGCTCGTTCCGTCAGTATTCGCCGGTTTCTGGCTGCTCTTTCTGATCTTCCTCCCGGCGGTGAGCTTTCTCCGTCGTCTGTTCGTCGCGGTCGTTCCGATGACGGTTGCAAGTTGTAAAGAGTCGAATCGATCGGATCGAATTGAATTGGTTCCGATTGACATTTTCTGGGTTAGTCATGTAAAGTGAAAAAAGAGTAGGGGGTGATTTATGTTATTTGTTAAAAGTAGAGGGGTTGGTTTGGTGAATTCTGATTATTTGTATTTGTTATTTGAATGATTCTTTTGTTCTTTGGTAATGGTAATGCAAATTATTTGACTTATTCATCCATTTAAAACTATTTTCAATCTTATTATTTTTTCTTAATATTCCAAGTATTATCAATTTCC

Coding sequence (CDS)

ATGACGCCGATTTCCGAAACCGATGCCGGCGAGATGTTCGTCAGAATCGCCATGTTCGTCTTTGTTCAGCTTCTTGTCTATTTGATTCTCTCCAAATCCTCCAACCTCTTCTCCAACGACCAGAAATTGAGATCTCTCAGCTTTAAACCGGCTCGTTCCGTCAGTATTCGCCGGTTTCTGGCTGCTCTTTCTGATCTTCCTCCCGGCGGTGAGCTTTCTCCGTCGTCTGTTCGTCGCGGTCGTTCCGATGACGGTTGCAAGTTGTAA

Protein sequence

MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPSSVRRGRSDDGCKL

Homology

[Close]

BLAST of MELO3C023928.2 vs. NCBI nr
Match: XP_008461750.1 (PREDICTED: uncharacterized protein LOC103500281 [Cucumis melo])

HSP 1 Score: 169.1 bits (427), Expect = 6.8e-39
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL 60
          MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL
Sbjct: 1  MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL 60

Query: 61 AALSDLPPGGELSPSSVRRGRSDDGCKL 89
          AALSDLPPGGELSPSSVRRGRSDDGCKL
Sbjct: 61 AALSDLPPGGELSPSSVRRGRSDDGCKL 88

[Close]

BLAST of MELO3C023928.2 vs. NCBI nr
Match: XP_011651805.1 (PREDICTED: uncharacterized protein LOC105434941 [Cucumis sativus])

HSP 1 Score: 144.4 bits (363), Expect = 1.8e-31
Identity = 79/95 (83.16%), Postives = 83/95 (87.37%), Query Frame = 0


Query: 1  MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL 60
          MTPI +TDAGEMFVRIAMFVF+QLLVYLILSKSSNLFSNDQK+RSLSFKPARSVSIRRFL
Sbjct: 1  MTPIFDTDAGEMFVRIAMFVFIQLLVYLILSKSSNLFSNDQKVRSLSFKPARSVSIRRFL 60

Query: 61 AALSDLPPGGELS-------PSSVRRGRSDDGCKL 89
          AALSDLPPGGELS       PSS R  RSDDG +L
Sbjct: 61 AALSDLPPGGELSPSTKVSTPSSARLDRSDDGGRL 95

[Close]

BLAST of MELO3C023928.2 vs. NCBI nr
Match: XP_009380057.1 (PREDICTED: uncharacterized protein LOC103968531 [Musa acuminata subsp. malaccensis])

HSP 1 Score: 96.7 bits (239), Expect = 4.3e-17
Identity = 49/81 (60.49%), Postives = 63/81 (77.78%), Query Frame = 0


Query: 4  ISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAAL 63
          I+     ++ +++ +F  VQ LVYLIL+KSSN+FS +QKLRSLSF+PARSVS+RR LA L
Sbjct: 3  IAMDGVSDVLMKVVVFAVVQALVYLILTKSSNVFSANQKLRSLSFRPARSVSVRRLLALL 62

Query: 64 SDLPPGGELSPSSVRRGRSDD 85
          SD+PPGGE SPSS  R  +DD
Sbjct: 63 SDMPPGGETSPSSSSRSLADD 83

[Close]

BLAST of MELO3C023928.2 vs. NCBI nr
Match: XP_020270452.1 (uncharacterized protein LOC109845591 [Asparagus officinalis])

HSP 1 Score: 95.9 bits (237), Expect = 7.3e-17
Identity = 49/67 (73.13%), Postives = 58/67 (86.57%), Query Frame = 0


Query: 10 GEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPG 69
          G++ +++AMFV VQ LVYLILSKSSN+FS + K+RS SFKPARSVSIRR LA +SDLPPG
Sbjct: 11 GDLLMKLAMFVLVQALVYLILSKSSNVFSPESKMRSRSFKPARSVSIRRMLALISDLPPG 70

Query: 70 GELSPSS 77
          GE SPSS
Sbjct: 71 GETSPSS 77

[Close]

BLAST of MELO3C023928.2 vs. NCBI nr
Match: XP_002512191.1 (uncharacterized protein LOC8289316 [Ricinus communis] >EEF50225.1 conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 94.0 bits (232), Expect = 2.8e-16
Identity = 52/81 (64.20%), Postives = 60/81 (74.07%), Query Frame = 0


Query: 4  ISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAAL 63
          I E+  G+M +++AMF  VQ LVY+ILSKSSN+FSN  K RS SFKPARSVSIRRFLAAL
Sbjct: 3  IMESSLGDMLLKVAMFALVQALVYIILSKSSNIFSNTVK-RSSSFKPARSVSIRRFLAAL 62

Query: 64 SDLPPGGELSPSSVRRGRSDD 85
           DLP  GELSPS      + D
Sbjct: 63 QDLPASGELSPSPKNPASTQD 82

[Close]

BLAST of MELO3C023928.2 vs. TAIR10
Match: AT1G05575.1 (unknown protein)

HSP 1 Score: 70.5 bits (171), Expect = 5.9e-13
Identity = 36/67 (53.73%), Postives = 53/67 (79.10%), Query Frame = 0


Query: 12 MFVRIAMFVFVQLLVYLILSKSSNLFSNDQKL-RSLSFKPARSVSIRRFLAALSDLPPGG 71
          M +++++F  +Q LVYLILSKSS++FS  + + R+ SF+ ARS+SIRR LA L D+P GG
Sbjct: 8  MLMKVSIFALIQGLVYLILSKSSSVFSTSKTMKRAYSFRSARSISIRRILAVLQDMPAGG 67

Query: 72 ELSPSSV 78
          E+SPS++
Sbjct: 68 EMSPSAM 74

[Close]

BLAST of MELO3C023928.2 vs. TAIR10
Match: AT2G31945.1 (unknown protein)

HSP 1 Score: 64.7 bits (156), Expect = 3.3e-11
Identity = 35/64 (54.69%), Postives = 46/64 (71.88%), Query Frame = 0


Query: 10 GEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKL-RSLSFKPARSVSIRRFLAALSDLPP 69
          G M +++A+F  VQ LVYLIL KSS +F+    L R+ SF+P RSVSIRR LAAL D+P 
Sbjct: 6  GTMLMKVALFALVQGLVYLILLKSSRVFARSNSLKRAYSFRPMRSVSIRRILAALQDIPA 65

Query: 70 GGEL 73
          G ++
Sbjct: 66 GDDM 69

[Close]

BLAST of MELO3C023928.2 vs. TrEMBL
Match: tr|A0A1S3CFW1|A0A1S3CFW1_CUCME (uncharacterized protein LOC103500281 OS=Cucumis melo OX=3656 GN=LOC103500281 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 4.5e-39
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL 60
          MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL
Sbjct: 1  MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL 60

Query: 61 AALSDLPPGGELSPSSVRRGRSDDGCKL 89
          AALSDLPPGGELSPSSVRRGRSDDGCKL
Sbjct: 61 AALSDLPPGGELSPSSVRRGRSDDGCKL 88

[Close]

BLAST of MELO3C023928.2 vs. TrEMBL
Match: tr|M0RJ50|M0RJ50_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis OX=214687 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 8.2e-17
Identity = 48/74 (64.86%), Postives = 61/74 (82.43%), Query Frame = 0


Query: 11 EMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPGG 70
          ++ +++ +F  VQ LVYLIL+KSSN+FS +QKLRSLSF+PARSVS+RR LA LSD+PPGG
Sbjct: 6  DVLMKVVVFAVVQALVYLILTKSSNVFSANQKLRSLSFRPARSVSVRRLLALLSDMPPGG 65

Query: 71 ELSPSSVRRGRSDD 85
          E SPSS  R  +DD
Sbjct: 66 ETSPSSSSRSLADD 79

[Close]

BLAST of MELO3C023928.2 vs. TrEMBL
Match: tr|B9REM2|B9REM2_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1775700 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.8e-16
Identity = 52/81 (64.20%), Postives = 60/81 (74.07%), Query Frame = 0


Query: 4  ISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAAL 63
          I E+  G+M +++AMF  VQ LVY+ILSKSSN+FSN  K RS SFKPARSVSIRRFLAAL
Sbjct: 3  IMESSLGDMLLKVAMFALVQALVYIILSKSSNIFSNTVK-RSSSFKPARSVSIRRFLAAL 62

Query: 64 SDLPPGGELSPSSVRRGRSDD 85
           DLP  GELSPS      + D
Sbjct: 63 QDLPASGELSPSPKNPASTQD 82

[Close]

BLAST of MELO3C023928.2 vs. TrEMBL
Match: tr|A0A175YFL8|A0A175YFL8_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_029591 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.2e-15
Identity = 48/76 (63.16%), Postives = 59/76 (77.63%), Query Frame = 0


Query: 1  MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL 60
          M  ++E D G+M V+IA+F+ VQ LVY ILS SSNLFSN       +F+PARSVSIRRFL
Sbjct: 1  MDMLTEYDLGDMLVKIALFLLVQALVYCILSNSSNLFSNSPPRSPGNFRPARSVSIRRFL 60

Query: 61 AALSDLPPGGELSPSS 77
          AALSD+P GGELSP++
Sbjct: 61 AALSDMPAGGELSPTT 76

[Close]

BLAST of MELO3C023928.2 vs. TrEMBL
Match: tr|U7DUH6|U7DUH6_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_009G024300v3 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.6e-15
Identity = 48/71 (67.61%), Postives = 56/71 (78.87%), Query Frame = 0


Query: 6  ETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSD 65
          E+  G++ +++AMFV VQ LVYLILSKSSN+FS     RS SFK ARSVSIRR LA L D
Sbjct: 4  ESSLGDVLLKVAMFVIVQGLVYLILSKSSNIFSKTNDKRSSSFKTARSVSIRRILAVLQD 63

Query: 66 LPPGGELSPSS 77
          LPPGGELSP+S
Sbjct: 64 LPPGGELSPAS 74

The following BLAST results are available for this feature:

BLAST of MELO3C023928.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008461750.1	6.8e-39	100.00	PREDICTED: uncharacterized protein LOC103500281 [Cucumis melo]	[more]
XP_011651805.1	1.8e-31	83.16	PREDICTED: uncharacterized protein LOC105434941 [Cucumis sativus]	[more]
XP_009380057.1	4.3e-17	60.49	PREDICTED: uncharacterized protein LOC103968531 [Musa acuminata subsp. malaccens...	[more]
XP_020270452.1	7.3e-17	73.13	uncharacterized protein LOC109845591 [Asparagus officinalis]	[more]
XP_002512191.1	2.8e-16	64.20	uncharacterized protein LOC8289316 [Ricinus communis] >EEF50225.1 conserved hypo...	[more]

BLAST of MELO3C023928.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G05575.1	5.9e-13	53.73	unknown protein	[more]
AT2G31945.1	3.3e-11	54.69	unknown protein	[more]

BLAST of MELO3C023928.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C023928.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CFW1\|A0A1S3CFW1_CUCME	4.5e-39	100.00	uncharacterized protein LOC103500281 OS=Cucumis melo OX=3656 GN=LOC103500281 PE=...	[more]
tr\|M0RJ50\|M0RJ50_MUSAM	8.2e-17	64.86	Uncharacterized protein OS=Musa acuminata subsp. malaccensis OX=214687 PE=4 SV=1	[more]
tr\|B9REM2\|B9REM2_RICCO	1.8e-16	64.20	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1775700 PE=4 SV=1	[more]
tr\|A0A175YFL8\|A0A175YFL8_DAUCA	1.2e-15	63.16	Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_029591 ...	[more]
tr\|U7DUH6\|U7DUH6_POPTR	1.6e-15	67.61	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_009G024300v3 PE=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016020	membrane
molecular_function	GO:0016874	ligase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C023928.2.1	MELO3C023928.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..88
None	No IPR available	PANTHER	PTHR34268:SF2	SUBFAMILY NOT NAMED	coord: 8..79
None	No IPR available	PANTHER	PTHR34268	FAMILY NOT NAMED	coord: 8..79

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C023928.2	CmoCh17G008950	Cucurbita moschata (Rifu)	cmomedB374
MELO3C023928.2	Lsi02G026240	Bottle gourd (USVL1VR-Ls)	lsimedB221
MELO3C023928.2	Carg18711	Silver-seed gourd	carmedB0365

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C023928.2	Wax gourd	medwgoB375
MELO3C023928.2	Cucumber (Gy14) v2	cgybmedB173
MELO3C023928.2	Cucumber (Gy14) v1	cgymedB311
MELO3C023928.2	Cucumber (Gy14) v1	cgymedB312
MELO3C023928.2	Cucurbita maxima (Rimu)	cmamedB257
MELO3C023928.2	Cucurbita maxima (Rimu)	cmamedB489
MELO3C023928.2	Cucurbita moschata (Rifu)	cmomedB239
MELO3C023928.2	Cucurbita moschata (Rifu)	cmomedB473
MELO3C023928.2	Cucurbita moschata (Rifu)	cmomedB476
MELO3C023928.2	Cucurbita pepo (Zucchini)	cpemedB615
MELO3C023928.2	Cucurbita pepo (Zucchini)	cpemedB673
MELO3C023928.2	Wild cucumber (PI 183967)	cpimedB193
MELO3C023928.2	Cucumber (Chinese Long) v2	cumedB193
MELO3C023928.2	Bottle gourd (USVL1VR-Ls)	lsimedB273
MELO3C023928.2	Watermelon (Charleston Gray)	medwcgB309
MELO3C023928.2	Watermelon (97103) v1	medwmB344
MELO3C023928.2	Silver-seed gourd	carmedB0211
MELO3C023928.2	Silver-seed gourd	carmedB0460
MELO3C023928.2	Silver-seed gourd	carmedB0770
MELO3C023928.2	Silver-seed gourd	carmedB0822
MELO3C023928.2	Cucumber (Chinese Long) v3	cucmedB198
MELO3C023928.2	Watermelon (97103) v2	medwmbB305