MELO3C023928 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C023928
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Coffea canephora DH200=94 genomic scaffold, scaffold_27
Location	chr4 : 24663054 .. 24663768 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAGCTCTCTCTCTTACCAACATGGCGGCTAAGACGGTCAAAGAACCTCCGTCAATAGCTTCCTCCCTCTATAAAAAACCCTCAAAACCTCCATTTTCTGTATCCAATTTCACTCCCATCTTTTTCATCCATCGACTCAACATTTCATCTTAGATTTTTCATCCTCAAATCCTTCACTATGACGCCGATTTCCGAAACCGATGCCGGCGAGATGTTCGTCAGAATCGCCATGTTCGTCTTTGTTCAGCTTCTTGTCTATTTGATTCTCTCCAAATCCTCCAACCTCTTCTCCAACGACCAGAAATTGAGATCTCTCAGCTTTAAACCGGCTCGTTCCGTCAGTATTCGCCGGTTTCTGGCTGCTCTTTCTGATCTTCCTCCCGGCGGTGAGCTTTCTCCGTCGTCTGTTCGTCGCGGTCGTTCCGATGACGGTTGCAAGTTGTAAAGAGTCGAATCGATCGGATCGAATTGAATTGGTTCCGATTGACATTTTCTGGGTTAGTCATGTAAAGTGAAAATGAGTAGGGGGTGATTTATGTTATTTGTTAAAAGTAGAGGGGTTGGTTTGGTGAATTCTGATTATTTGTATTTGTTATTTGAATGATTCTTTTGTTCTTTGGTAATGGTAATGCAAATTATTTGACTTATTCATCCATTTAAAACTATTTTCAATCTTATTATTTTTTCTTAATATTCCAAGTATTATCAATTTCC

mRNA sequence

CAAAGCTCTCTCTCTTACCAACATGGCGGCTAAGACGGTCAAAGAACCTCCGTCAATAGCTTCCTCCCTCTATAAAAAACCCTCAAAACCTCCATTTTCTGTATCCAATTTCACTCCCATCTTTTTCATCCATCGACTCAACATTTCATCTTAGATTTTTCATCCTCAAATCCTTCACTATGACGCCGATTTCCGAAACCGATGCCGGCGAGATGTTCGTCAGAATCGCCATGTTCGTCTTTGTTCAGCTTCTTGTCTATTTGATTCTCTCCAAATCCTCCAACCTCTTCTCCAACGACCAGAAATTGAGATCTCTCAGCTTTAAACCGGCTCGTTCCGTCAGTATTCGCCGGTTTCTGGCTGCTCTTTCTGATCTTCCTCCCGGCGGTGAGCTTTCTCCGTCGTCTGTTCGTCGCGGTCGTTCCGATGACGGTTGCAAGTTGTAAAGAGTCGAATCGATCGGATCGAATTGAATTGGTTCCGATTGACATTTTCTGGGTTAGTCATGTAAAGTGAAAATGAGTAGGGGGTGATTTATGTTATTTGTTAAAAGTAGAGGGGTTGGTTTGGTGAATTCTGATTATTTGTATTTGTTATTTGAATGATTCTTTTGTTCTTTGGTAATGGTAATGCAAATTATTTGACTTATTCATCCATTTAAAACTATTTTCAATCTTATTATTTTTTCTTAATATTCCAAGTATTATCAATTTCC

Coding sequence (CDS)

ATGACGCCGATTTCCGAAACCGATGCCGGCGAGATGTTCGTCAGAATCGCCATGTTCGTCTTTGTTCAGCTTCTTGTCTATTTGATTCTCTCCAAATCCTCCAACCTCTTCTCCAACGACCAGAAATTGAGATCTCTCAGCTTTAAACCGGCTCGTTCCGTCAGTATTCGCCGGTTTCTGGCTGCTCTTTCTGATCTTCCTCCCGGCGGTGAGCTTTCTCCGTCGTCTGTTCGTCGCGGTCGTTCCGATGACGGTTGCAAGTTGTAA

Protein sequence

MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPGGELSPSSVRRGRSDDGCKL*

Homology

[Close]

BLAST of MELO3C023928 vs. TrEMBL
Match: M0RJ50_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 3.1e-18
Identity = 48/74 (64.86%), Postives = 61/74 (82.43%), Query Frame = 1


Query: 11 EMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSDLPPGG 70
          ++ +++ +F  VQ LVYLIL+KSSN+FS +QKLRSLSF+PARSVS+RR LA LSD+PPGG
Sbjct: 6  DVLMKVVVFAVVQALVYLILTKSSNVFSANQKLRSLSFRPARSVSVRRLLALLSDMPPGG 65

Query: 71 ELSPSSVRRGRSDD 85
          E SPSS  R  +DD
Sbjct: 66 ETSPSSSSRSLADD 79

[Close]

BLAST of MELO3C023928 vs. TrEMBL
Match: B9REM2_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1775700 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.5e-17
Identity = 52/81 (64.20%), Postives = 60/81 (74.07%), Query Frame = 1


Query: 4  ISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAAL 63
          I E+  G+M +++AMF  VQ LVY+ILSKSSN+FSN  K RS SFKPARSVSIRRFLAAL
Sbjct: 3  IMESSLGDMLLKVAMFALVQALVYIILSKSSNIFSNTVK-RSSSFKPARSVSIRRFLAAL 62

Query: 64 SDLPPGGELSPSSVRRGRSDD 85
           DLP  GELSPS      + D
Sbjct: 63 QDLPASGELSPSPKNPASTQD 82

[Close]

BLAST of MELO3C023928 vs. TrEMBL
Match: U7DUH6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0650s00210g PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.3e-16
Identity = 48/71 (67.61%), Postives = 56/71 (78.87%), Query Frame = 1


Query: 6  ETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSD 65
          E+  G++ +++AMFV VQ LVYLILSKSSN+FS     RS SFK ARSVSIRR LA L D
Sbjct: 4  ESSLGDVLLKVAMFVIVQGLVYLILSKSSNIFSKTNDKRSSSFKTARSVSIRRILAVLQD 63

Query: 66 LPPGGELSPSS 77
          LPPGGELSP+S
Sbjct: 64 LPPGGELSPAS 74

[Close]

BLAST of MELO3C023928 vs. TrEMBL
Match: U5G004_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s02920g PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.3e-16
Identity = 48/71 (67.61%), Postives = 56/71 (78.87%), Query Frame = 1


Query: 6  ETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSD 65
          E+  G++ +++AMFV VQ LVYLILSKSSN+FS     RS SFK ARSVSIRR LA L D
Sbjct: 4  ESSLGDVLLKVAMFVIVQGLVYLILSKSSNIFSKTNDKRSSSFKTARSVSIRRILAVLQD 63

Query: 66 LPPGGELSPSS 77
          LPPGGELSP+S
Sbjct: 64 LPPGGELSPAS 74

[Close]

BLAST of MELO3C023928 vs. TrEMBL
Match: F6HPS7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0156g00150 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 2.9e-16
Identity = 49/75 (65.33%), Postives = 58/75 (77.33%), Query Frame = 1


Query: 6  ETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAALSD 65
          E+   +M +++ MFV VQ LVYLILSKSSN+FS + K RS  FKPARSVSIRR LA L+D
Sbjct: 4  ESSLADMVLKVGMFVLVQALVYLILSKSSNIFSKNPK-RSHRFKPARSVSIRRVLACLAD 63

Query: 66 LPPGGELSPSSVRRG 81
          LPPGGELSPS   +G
Sbjct: 64 LPPGGELSPSPSPKG 77

[Close]

BLAST of MELO3C023928 vs. TAIR10
Match: AT2G31945.1 (AT2G31945.1 unknown protein)

HSP 1 Score: 75.1 bits (183), Expect = 2.4e-14
Identity = 39/68 (57.35%), Postives = 48/68 (70.59%), Query Frame = 1


Query: 10 GEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKL-RSLSFKPARSVSIRRFLAALSDLPP 69
          G M +++A+F  VQ LVYLIL KSS +F+    L R+ SF+P RSVSIRR LAAL D+P 
Sbjct: 6  GTMLMKVALFALVQGLVYLILLKSSRVFARSNSLKRAYSFRPMRSVSIRRILAALQDIPA 65

Query: 70 GGELSPSS 77
          G ++SPSS
Sbjct: 66 GDDMSPSS 73

[Close]

BLAST of MELO3C023928 vs. TAIR10
Match: AT1G05575.1 (AT1G05575.1 unknown protein)

HSP 1 Score: 74.3 bits (181), Expect = 4.2e-14
Identity = 36/67 (53.73%), Postives = 51/67 (76.12%), Query Frame = 1


Query: 12 MFVRIAMFVFVQLLVYLILSKSSNLFSNDQKL-RSLSFKPARSVSIRRFLAALSDLPPGG 71
          M +++++F  +Q LVYLILSKSS++FS  + + R+ SF+ ARS+SIRR LA L D+P GG
Sbjct: 8  MLMKVSIFALIQGLVYLILSKSSSVFSTSKTMKRAYSFRSARSISIRRILAVLQDMPAGG 67

Query: 72 ELSPSSV 78
          E+SPS++
Sbjct: 68 EMSPSAM 74

[Close]

BLAST of MELO3C023928 vs. NCBI nr
Match: gi|659123611|ref|XP_008461750.1| (PREDICTED: uncharacterized protein LOC103500281 [Cucumis melo])

HSP 1 Score: 171.4 bits (433), Expect = 7.1e-40
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1


Query: 1  MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL 60
          MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL
Sbjct: 1  MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL 60

Query: 61 AALSDLPPGGELSPSSVRRGRSDDGCKL 89
          AALSDLPPGGELSPSSVRRGRSDDGCKL
Sbjct: 61 AALSDLPPGGELSPSSVRRGRSDDGCKL 88

[Close]

BLAST of MELO3C023928 vs. NCBI nr
Match: gi|778682889|ref|XP_011651805.1| (PREDICTED: uncharacterized protein LOC105434941 [Cucumis sativus])

HSP 1 Score: 146.7 bits (369), Expect = 1.9e-32
Identity = 79/95 (83.16%), Postives = 83/95 (87.37%), Query Frame = 1


Query: 1  MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL 60
          MTPI +TDAGEMFVRIAMFVF+QLLVYLILSKSSNLFSNDQK+RSLSFKPARSVSIRRFL
Sbjct: 1  MTPIFDTDAGEMFVRIAMFVFIQLLVYLILSKSSNLFSNDQKVRSLSFKPARSVSIRRFL 60

Query: 61 AALSDLPPGGELS-------PSSVRRGRSDDGCKL 89
          AALSDLPPGGELS       PSS R  RSDDG +L
Sbjct: 61 AALSDLPPGGELSPSTKVSTPSSARLDRSDDGGRL 95

[Close]

BLAST of MELO3C023928 vs. NCBI nr
Match: gi|695066338|ref|XP_009380057.1| (PREDICTED: uncharacterized protein LOC103968531 [Musa acuminata subsp. malaccensis])

HSP 1 Score: 99.4 bits (246), Expect = 3.4e-18
Identity = 49/81 (60.49%), Postives = 63/81 (77.78%), Query Frame = 1


Query: 4  ISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAAL 63
          I+     ++ +++ +F  VQ LVYLIL+KSSN+FS +QKLRSLSF+PARSVS+RR LA L
Sbjct: 3  IAMDGVSDVLMKVVVFAVVQALVYLILTKSSNVFSANQKLRSLSFRPARSVSVRRLLALL 62

Query: 64 SDLPPGGELSPSSVRRGRSDD 85
          SD+PPGGE SPSS  R  +DD
Sbjct: 63 SDMPPGGETSPSSSSRSLADD 83

[Close]

BLAST of MELO3C023928 vs. NCBI nr
Match: gi|255542255|ref|XP_002512191.1| (PREDICTED: uncharacterized protein LOC8289316 [Ricinus communis])

HSP 1 Score: 96.7 bits (239), Expect = 2.2e-17
Identity = 52/81 (64.20%), Postives = 60/81 (74.07%), Query Frame = 1


Query: 4  ISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFLAAL 63
          I E+  G+M +++AMF  VQ LVY+ILSKSSN+FSN  K RS SFKPARSVSIRRFLAAL
Sbjct: 3  IMESSLGDMLLKVAMFALVQALVYIILSKSSNIFSNTVK-RSSSFKPARSVSIRRFLAAL 62

Query: 64 SDLPPGGELSPSSVRRGRSDD 85
           DLP  GELSPS      + D
Sbjct: 63 QDLPASGELSPSPKNPASTQD 82

[Close]

BLAST of MELO3C023928 vs. NCBI nr
Match: gi|1021024190|gb|KZM81978.1| (hypothetical protein DCAR_029591 [Daucus carota subsp. sativus])

HSP 1 Score: 94.0 bits (232), Expect = 1.4e-16
Identity = 48/76 (63.16%), Postives = 59/76 (77.63%), Query Frame = 1


Query: 1  MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL 60
          M  ++E D G+M V+IA+F+ VQ LVY ILS SSNLFSN       +F+PARSVSIRRFL
Sbjct: 1  MDMLTEYDLGDMLVKIALFLLVQALVYCILSNSSNLFSNSPPRSPGNFRPARSVSIRRFL 60

Query: 61 AALSDLPPGGELSPSS 77
          AALSD+P GGELSP++
Sbjct: 61 AALSDMPAGGELSPTT 76

The following BLAST results are available for this feature:

BLAST of MELO3C023928 vs. TrEMBL


Match Name	E-value	Identity	Description
M0RJ50_MUSAM	3.1e-18	64.86	Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1	[more]
B9REM2_RICCO	1.5e-17	64.20	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1775700 PE=4 SV=1	[more]
U7DUH6_POPTR	1.3e-16	67.61	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0650s00210g PE=4 SV=1	[more]
U5G004_POPTR	1.3e-16	67.61	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s02920g PE=4 SV=1	[more]
F6HPS7_VITVI	2.9e-16	65.33	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0156g00150 PE=4 SV=...	[more]

BLAST of MELO3C023928 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G31945.1	2.4e-14	57.35	unknown protein	[more]
AT1G05575.1	4.2e-14	53.73	unknown protein	[more]

BLAST of MELO3C023928 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659123611\|ref\|XP_008461750.1\|	7.1e-40	100.00	PREDICTED: uncharacterized protein LOC103500281 [Cucumis melo]	[more]
gi\|778682889\|ref\|XP_011651805.1\|	1.9e-32	83.16	PREDICTED: uncharacterized protein LOC105434941 [Cucumis sativus]	[more]
gi\|695066338\|ref\|XP_009380057.1\|	3.4e-18	60.49	PREDICTED: uncharacterized protein LOC103968531 [Musa acuminata subsp. malaccens...	[more]
gi\|255542255\|ref\|XP_002512191.1\|	2.2e-17	64.20	PREDICTED: uncharacterized protein LOC8289316 [Ricinus communis]	[more]
gi\|1021024190\|gb\|KZM81978.1\|	1.4e-16	63.16	hypothetical protein DCAR_029591 [Daucus carota subsp. sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C023928T1	MELO3C023928T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34268	FAMILY NOT NAMED	coord: 6..82 score: 2.8
None	No IPR available	PANTHER	PTHR34268:SF2	SUBFAMILY NOT NAMED	coord: 6..82 score: 2.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C023928	CmoCh17G008950	Cucurbita moschata (Rifu)	cmomeB326
MELO3C023928	Lsi02G026240	Bottle gourd (USVL1VR-Ls)	lsimeB212
MELO3C023928	Carg18711	Silver-seed gourd	carmeB0360

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C023928	Cucumber (Chinese Long) v2	cumeB207
MELO3C023928	Watermelon (Charleston Gray)	mewcgB315
MELO3C023928	Watermelon (97103) v1	mewmB346
MELO3C023928	Cucurbita pepo (Zucchini)	cpemeB133
MELO3C023928	Cucurbita pepo (Zucchini)	cpemeB308
MELO3C023928	Cucurbita pepo (Zucchini)	cpemeB517
MELO3C023928	Cucurbita pepo (Zucchini)	cpemeB566
MELO3C023928	Bottle gourd (USVL1VR-Ls)	lsimeB260
MELO3C023928	Cucumber (Gy14) v2	cgybmeB172
MELO3C023928	Silver-seed gourd	carmeB0206
MELO3C023928	Silver-seed gourd	carmeB0457
MELO3C023928	Silver-seed gourd	carmeB0755
MELO3C023928	Silver-seed gourd	carmeB0811
MELO3C023928	Cucumber (Chinese Long) v3	cucmeB205
MELO3C023928	Watermelon (97103) v2	mewmbB316
MELO3C023928	Wax gourd	mewgoB374
MELO3C023928	Cucumber (Gy14) v1	cgymeB316
MELO3C023928	Cucumber (Gy14) v1	cgymeB317
MELO3C023928	Cucurbita maxima (Rimu)	cmameB226
MELO3C023928	Cucurbita maxima (Rimu)	cmameB333
MELO3C023928	Cucurbita maxima (Rimu)	cmameB426
MELO3C023928	Cucurbita moschata (Rifu)	cmomeB210
MELO3C023928	Cucurbita moschata (Rifu)	cmomeB416
MELO3C023928	Cucurbita moschata (Rifu)	cmomeB824
MELO3C023928	Wild cucumber (PI 183967)	cpimeB199