MELO3C023838 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C023838
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionPentatricopeptide repeat-containing protein
Locationchr10 : 6109396 .. 6109569 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGCTACGTCGGGTGCTTGTAAAATTCACAAAAATGTTGAATTGGGAGAGAGCCGCTAACAAACTATTTGAGTTGAACTCTGATGAAGGTGGCTACTATGTCTTGTTTGTGAGTATTTATGAATCTGCTTCAAAATGGAATAAGGTAGCTGAAGTGAAAAAAGCAATATAA

mRNA sequence

ATGGTGCTACGTCGGGTGCTTGTAAAATTCACAAAAATGTTGAATTGGGAGAGAGCCGCTAACAAACTATTTGAGTTGAACTCTGATGAAGGTGGCTACTATGTCTTGTTTGTGAGTATTTATGAATCTGCTTCAAAATGGAATAAGGTAGCTGAAGTGAAAAAAGCAATATAA

Coding sequence (CDS)

ATGGTGCTACGTCGGGTGCTTGTAAAATTCACAAAAATGTTGAATTGGGAGAGAGCCGCTAACAAACTATTTGAGTTGAACTCTGATGAAGGTGGCTACTATGTCTTGTTTGTGAGTATTTATGAATCTGCTTCAAAATGGAATAAGGTAGCTGAAGTGAAAAAAGCAATATAA

Protein sequence

MVLRRVLVKFTKMLNWERAANKLFELNSDEGGYYVLFVSIYESASKWNKVAEVKKAI*
Homology
[Close]
BLAST of MELO3C023838 vs. Swiss-Prot
Match: PPR32_ARATH (Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 1.1e-06
Identity = 22/38 (57.89%), Postives = 28/38 (73.68%), Query Frame = 1 

Query: 17  ERAANKLFELNSDEGGYYVLFVSIYESASKWNKVAEVK 55
           E+AA +LFELN D+GGY+VL  +IY +AS W KV +V+
Sbjct: 627 EKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVR 664

[Close]
BLAST of MELO3C023838 vs. TrEMBL
Match: A0A0A0KPP6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G583260 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.1e-07
Identity = 28/41 (68.29%), Postives = 34/41 (82.93%), Query Frame = 1 

Query: 17  ERAANKLFELNSDEGGYYVLFVSIYESASKWNKVAEVKKAI 58
           E+AA KLFELN DEGGY+VL  +IY S SKW+KVAEV+K +
Sbjct: 639 EKAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTM 679

[Close]
BLAST of MELO3C023838 vs. TrEMBL
Match: A0A067L904_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24583 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.3e-06
Identity = 26/38 (68.42%), Postives = 32/38 (84.21%), Query Frame = 1 

Query: 17  ERAANKLFELNSDEGGYYVLFVSIYESASKWNKVAEVK 55
           E+AANKLFELN DEGGY+VL  +IY +AS W K+AEV+
Sbjct: 633 EKAANKLFELNPDEGGYHVLLANIYATASMWEKLAEVR 670

[Close]
BLAST of MELO3C023838 vs. TrEMBL
Match: A0A0A0KRU0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G583250 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 4.0e-06
Identity = 26/41 (63.41%), Postives = 33/41 (80.49%), Query Frame = 1 

Query: 17  ERAANKLFELNSDEGGYYVLFVSIYESASKWNKVAEVKKAI 58
           E+AANKLFELN   GGY+VL  +IY SA KW+K+AE++K I
Sbjct: 85  EKAANKLFELNPVGGGYHVLLANIYPSALKWSKIAEIRKTI 125

[Close]
BLAST of MELO3C023838 vs. TrEMBL
Match: A0A059BIH8_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G03194 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 6.8e-06
Identity = 26/39 (66.67%), Postives = 32/39 (82.05%), Query Frame = 1 

Query: 17  ERAANKLFELNSDEGGYYVLFVSIYESASKWNKVAEVKK 56
           E AANKLFELN  EGGY+VL  +IY +AS W++VAEV+K
Sbjct: 578 EMAANKLFELNPQEGGYHVLLANIYATASMWSEVAEVRK 616

[Close]
BLAST of MELO3C023838 vs. TAIR10
Match: AT1G11290.1 (AT1G11290.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 53.1 bits (126), Expect = 6.5e-08
Identity = 22/38 (57.89%), Postives = 28/38 (73.68%), Query Frame = 1 

Query: 17  ERAANKLFELNSDEGGYYVLFVSIYESASKWNKVAEVK 55
           E+AA +LFELN D+GGY+VL  +IY +AS W KV +V+
Sbjct: 627 EKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVR 664

[Close]
BLAST of MELO3C023838 vs. NCBI nr
Match: gi|659090279|ref|XP_008445930.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g11290 isoform X1 [Cucumis melo])

HSP 1 Score: 64.7 bits (156), Expect = 6.1e-08
Identity = 29/41 (70.73%), Postives = 35/41 (85.37%), Query Frame = 1 

Query: 17  ERAANKLFELNSDEGGYYVLFVSIYESASKWNKVAEVKKAI 58
           E+AANKLFELN DEGGY+VL  +IY S SKW+KVAEV+K +
Sbjct: 639 EKAANKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTM 679

[Close]
BLAST of MELO3C023838 vs. NCBI nr
Match: gi|778704342|ref|XP_004147126.2| (PREDICTED: pentatricopeptide repeat-containing protein At1g11290 isoform X1 [Cucumis sativus])

HSP 1 Score: 62.4 bits (150), Expect = 3.0e-07
Identity = 28/41 (68.29%), Postives = 34/41 (82.93%), Query Frame = 1 

Query: 17  ERAANKLFELNSDEGGYYVLFVSIYESASKWNKVAEVKKAI 58
           E+AA KLFELN DEGGY+VL  +IY S SKW+KVAEV+K +
Sbjct: 639 EKAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTM 679

[Close]
BLAST of MELO3C023838 vs. NCBI nr
Match: gi|778704346|ref|XP_011655522.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g11290 isoform X2 [Cucumis sativus])

HSP 1 Score: 62.4 bits (150), Expect = 3.0e-07
Identity = 28/41 (68.29%), Postives = 34/41 (82.93%), Query Frame = 1 

Query: 17  ERAANKLFELNSDEGGYYVLFVSIYESASKWNKVAEVKKAI 58
           E+AA KLFELN DEGGY+VL  +IY S SKW+KVAEV+K +
Sbjct: 455 EKAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTM 495

[Close]
BLAST of MELO3C023838 vs. NCBI nr
Match: gi|659090281|ref|XP_008445931.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g11290 isoform X2 [Cucumis melo])

HSP 1 Score: 60.8 bits (146), Expect = 8.8e-07
Identity = 28/41 (68.29%), Postives = 34/41 (82.93%), Query Frame = 1 

Query: 17  ERAANKLFELNSDEGGYYVLFVSIYESASKWNKVAEVKKAI 58
           E+AANKLFELN  EGGY+VL  +IY SA KW+K+AEV+K I
Sbjct: 639 EKAANKLFELNPAEGGYHVLLANIYPSALKWSKLAEVRKTI 679

[Close]
BLAST of MELO3C023838 vs. NCBI nr
Match: gi|802574255|ref|XP_012068740.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g11290 [Jatropha curcas])

HSP 1 Score: 58.9 bits (141), Expect = 3.3e-06
Identity = 26/38 (68.42%), Postives = 32/38 (84.21%), Query Frame = 1 

Query: 17  ERAANKLFELNSDEGGYYVLFVSIYESASKWNKVAEVK 55
           E+AANKLFELN DEGGY+VL  +IY +AS W K+AEV+
Sbjct: 633 EKAANKLFELNPDEGGYHVLLANIYATASMWEKLAEVR 670

The following BLAST results are available for this feature:
BLAST of MELO3C023838 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PPR32_ARATH1.1e-0657.89Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidop... [more]
BLAST of MELO3C023838 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KPP6_CUCSA2.1e-0768.29Uncharacterized protein OS=Cucumis sativus GN=Csa_5G583260 PE=4 SV=1[more]
A0A067L904_JATCU2.3e-0668.42Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24583 PE=4 SV=1[more]
A0A0A0KRU0_CUCSA4.0e-0663.41Uncharacterized protein OS=Cucumis sativus GN=Csa_5G583250 PE=4 SV=1[more]
A0A059BIH8_EUCGR6.8e-0666.67Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G03194 PE=4 SV=1[more]
BLAST of MELO3C023838 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G11290.16.5e-0857.89 Pentatricopeptide repeat (PPR) superfamily protein[more]
BLAST of MELO3C023838 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659090279|ref|XP_008445930.1|6.1e-0870.73PREDICTED: pentatricopeptide repeat-containing protein At1g11290 isoform X1 [Cuc... [more]
gi|778704342|ref|XP_004147126.2|3.0e-0768.29PREDICTED: pentatricopeptide repeat-containing protein At1g11290 isoform X1 [Cuc... [more]
gi|778704346|ref|XP_011655522.1|3.0e-0768.29PREDICTED: pentatricopeptide repeat-containing protein At1g11290 isoform X2 [Cuc... [more]
gi|659090281|ref|XP_008445931.1|8.8e-0768.29PREDICTED: pentatricopeptide repeat-containing protein At1g11290 isoform X2 [Cuc... [more]
gi|802574255|ref|XP_012068740.1|3.3e-0668.42PREDICTED: pentatricopeptide repeat-containing protein At1g11290 [Jatropha curca... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016556 mRNA modification
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
cellular_component GO:0009507 chloroplast
molecular_function GO:0004519 endonuclease activity
molecular_function GO:0008568 microtubule-severing ATPase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C023838T1MELO3C023838T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C023838Cucurbita moschata (Rifu)cmomeB480
MELO3C023838Cucurbita moschata (Rifu)cmomeB522
MELO3C023838Cucurbita moschata (Rifu)cmomeB577
MELO3C023838Cucurbita moschata (Rifu)cmomeB644
MELO3C023838Cucurbita moschata (Rifu)cmomeB646
MELO3C023838Wild cucumber (PI 183967)cpimeB172
MELO3C023838Wild cucumber (PI 183967)cpimeB264
MELO3C023838Wild cucumber (PI 183967)cpimeB360
MELO3C023838Wild cucumber (PI 183967)cpimeB365
MELO3C023838Wild cucumber (PI 183967)cpimeB413
MELO3C023838Cucumber (Chinese Long) v2cumeB271
MELO3C023838Cucumber (Chinese Long) v2cumeB339
MELO3C023838Cucumber (Chinese Long) v2cumeB342
MELO3C023838Cucumber (Chinese Long) v2cumeB414
MELO3C023838Watermelon (Charleston Gray)mewcgB040
MELO3C023838Watermelon (Charleston Gray)mewcgB041
MELO3C023838Watermelon (Charleston Gray)mewcgB057
MELO3C023838Watermelon (Charleston Gray)mewcgB060
MELO3C023838Watermelon (Charleston Gray)mewcgB066
MELO3C023838Watermelon (97103) v1mewmB042
MELO3C023838Watermelon (97103) v1mewmB043
MELO3C023838Watermelon (97103) v1mewmB055
MELO3C023838Watermelon (97103) v1mewmB069
MELO3C023838Watermelon (97103) v1mewmB072
MELO3C023838Cucurbita pepo (Zucchini)cpemeB246
MELO3C023838Cucurbita pepo (Zucchini)cpemeB376
MELO3C023838Cucurbita pepo (Zucchini)cpemeB378
MELO3C023838Cucurbita pepo (Zucchini)cpemeB654
MELO3C023838Bottle gourd (USVL1VR-Ls)lsimeB042
MELO3C023838Bottle gourd (USVL1VR-Ls)lsimeB122
MELO3C023838Bottle gourd (USVL1VR-Ls)lsimeB169
MELO3C023838Bottle gourd (USVL1VR-Ls)lsimeB235
MELO3C023838Bottle gourd (USVL1VR-Ls)lsimeB281
MELO3C023838Cucumber (Gy14) v2cgybmeB147
MELO3C023838Cucumber (Gy14) v2cgybmeB232
MELO3C023838Cucumber (Gy14) v2cgybmeB310
MELO3C023838Cucumber (Gy14) v2cgybmeB317
MELO3C023838Silver-seed gourdcarmeB0264
MELO3C023838Silver-seed gourdcarmeB0305
MELO3C023838Silver-seed gourdcarmeB0338
MELO3C023838Silver-seed gourdcarmeB0660
MELO3C023838Silver-seed gourdcarmeB0853
MELO3C023838Silver-seed gourdcarmeB0913
MELO3C023838Cucumber (Chinese Long) v3cucmeB174
MELO3C023838Cucumber (Chinese Long) v3cucmeB270
MELO3C023838Cucumber (Chinese Long) v3cucmeB370
MELO3C023838Cucumber (Chinese Long) v3cucmeB377
MELO3C023838Cucumber (Chinese Long) v3cucmeB427
MELO3C023838Watermelon (97103) v2mewmbB058
MELO3C023838Watermelon (97103) v2mewmbB076
MELO3C023838Watermelon (97103) v2mewmbB044
MELO3C023838Watermelon (97103) v2mewmbB065
MELO3C023838Wax gourdmewgoB050
MELO3C023838Wax gourdmewgoB066
MELO3C023838Wax gourdmewgoB067
MELO3C023838Wax gourdmewgoB082
MELO3C023838Melon (DHL92) v3.5.1memeB007
MELO3C023838Melon (DHL92) v3.5.1memeB031
MELO3C023838Melon (DHL92) v3.5.1memeB034
MELO3C023838Cucumber (Gy14) v1cgymeB059
MELO3C023838Cucumber (Gy14) v1cgymeB290
MELO3C023838Cucumber (Gy14) v1cgymeB616
MELO3C023838Cucurbita maxima (Rimu)cmameB488
MELO3C023838Cucurbita maxima (Rimu)cmameB532
MELO3C023838Cucurbita maxima (Rimu)cmameB588
MELO3C023838Cucurbita maxima (Rimu)cmameB652
MELO3C023838Cucurbita maxima (Rimu)cmameB654