MELO3C023837.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C023837.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
Descriptiontranscription termination factor MTERF5, chloroplastic-like
Locationchr10 : 6590096 .. 6591549 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCACCAATCTGAAGCCTAAATTCGTGTTCCTCCAGGAAATCGGGTTCGTCGGTCCTTTACTTTCTAAGCTAATTCTATCAAACCCTTGGCTTCTTCACAGGAGGTTAGCTTCTCAGTTAAAACCATCATCTTTTTTCCTAAAGGGAACGCTTGAATCAGATGAACAAGTAACTGCTACTAGTCTTCGTTGTCCGTCTCTTCTAACTTATGATTTTAAGGGTATTTTAAAATCTAACATTGATGTTTTAGCCAGTGAACGGTACCTTCTAGGAATATAGCAAAATTGATTGTATTGAATTCTAGAACTATAATGCAAAAGGTTGATAGAATGATTCAAGTAGTGAAAACGCTTAAAGAATTGGGCATTGAACCAAAGGCTTCTACGTTTGTTCATGCACTTAGAGTAAGGGGTGGAATGAGTGATCCAATTTGGAAGAAGAAAATAAATGTTTTGAAGAGTTTGGGATGGTCTGAGAATGAGATTTTTACACTATTTAAGAGACAACCAATGTCTTTAGCTCGTTCGGAGGAGAAAATGAGGTATGCCGCAGATTTCTGTTTCAACACTGTAAAGTTGGATCCAGGAACTGTAATTTCTTACCCTATGTCCTTCGTGTATTCAGTCGACAAGCAGCTGCGGCCAAAGTACAAAGTTCTTGAGGTTTTGAAGCTAAAAAATCTTCTCAAGAACAAAAAGATTGTTCGGCCCCTTGTACGAGGGTAGAGAGAATTTGTGGAGAATTATGTTCTTAAGCATTTGAATGAAATACCAAATCTAATAGACATATACCGGGACAATGTCACAGCCTGTTCTATAGAATTGGAAAGTTGTAAGTTAATAGTCTTCTTATAGTTTAAATTTCAGCATCATTATCTTCAAATGGGAGATCATTTTTGTTGTTATTGAGCTCCTTTTCAATTTCAGGCTGTTAGCTAAATCAATTGTTGTATATTTCTTAATGTTGCTAAGTATGTAGCCTAACTCTAGTTCCAATGACTTTGAAATGAATGGCCTTTTGTTTTTCCCCTCCTAATCTTTCGGAAAAGTATCGTAGTACCCGACTAGTATTTAAATGTCCAAAATGTCCAAAAGCAATGGCACGCTTTTTACTATGACTATTGAGAAGCTGCTCTGCACATTGCCTTCTACATTGTAAATCAGGTTAGTGTCGGGCACATAGCTAGCTGCCTTGATTTCATCCCCATGTTTTCAAGAAAGGCATATGTTCTCTTGAATTGTGGATGAGTTGTGCTCGCTGAATAGAAGGAATGAACATGATTTCCCAACTCCACCGAGCTACAATCGGGAGTTTTCTTAAGCCATTGCTTCTCTATTATATTGCTTTTTTCACTTCAGCTACCTTATTCCATTTTGAAGCAGATTCATAAATACTCACAAACAAGACATAGTAGCCACCTTCATCAGAGTTCAACTCAAATAGTTTGTTAG

mRNA sequence

ATGTCCACCAATCTGAAGCCTAAATTCGTGTTCCTCCAGGAAATCGGGTTCGTCGGTCCTTTACTTTCTAAGCTAATTCTATCAAACCCTTGGCTTCTTCACAGGAGGTTAGCTTCTCAGTTAAAACCATCATCTTTTTTCCTAAAGGGAACGCTTGAATCAGATGAACAAGTAACTGCTACTAGTCTTCGTTGTCCGTCTCTTCTAACTTATGATTTTAAGGGTATTTTAAAATCTAACATTGATGTTTTAGCCAGTGAACGAACTATAATGCAAAAGGTTGATAGAATGATTCAAGTAGTGAAAACGCTTAAAGAATTGGGCATTGAACCAAAGGCTTCTACGTTTGTTCATGCACTTAGAGTAAGGGGTGGAATGAGTGATCCAATTTGGAAGAAGAAAATAAATGTTTTGAAGAGTTTGGGATGGTCTGAGAATGAGATTTTTACACTATTTAAGAGACAACCAATGTCTTTAGCTCGTTCGGAGGAGAAAATGAGGTATGCCGCAGATTTCTGTTTCAACACTGTAAAGTTGGATCCAGGAACTGTAATTTCTTACCCTATGTCCTTCGTGTATTCAGTCGACAAGCAGCTGCGGCCAAAGTACAAAGTTCTTGAGGTTTTGAAGCTAAAAAATCTTCTCAAGAACAAAAAGATTGTTCGGCCCCTTCTACCTTATTCCATTTTGAAGCAGATTCATAAATACTCACAAACAAGACATAGTAGCCACCTTCATCAGAGTTCAACTCAAATAGTTTGTTAG

Coding sequence (CDS)

ATGTCCACCAATCTGAAGCCTAAATTCGTGTTCCTCCAGGAAATCGGGTTCGTCGGTCCTTTACTTTCTAAGCTAATTCTATCAAACCCTTGGCTTCTTCACAGGAGGTTAGCTTCTCAGTTAAAACCATCATCTTTTTTCCTAAAGGGAACGCTTGAATCAGATGAACAAGTAACTGCTACTAGTCTTCGTTGTCCGTCTCTTCTAACTTATGATTTTAAGGGTATTTTAAAATCTAACATTGATGTTTTAGCCAGTGAACGAACTATAATGCAAAAGGTTGATAGAATGATTCAAGTAGTGAAAACGCTTAAAGAATTGGGCATTGAACCAAAGGCTTCTACGTTTGTTCATGCACTTAGAGTAAGGGGTGGAATGAGTGATCCAATTTGGAAGAAGAAAATAAATGTTTTGAAGAGTTTGGGATGGTCTGAGAATGAGATTTTTACACTATTTAAGAGACAACCAATGTCTTTAGCTCGTTCGGAGGAGAAAATGAGGTATGCCGCAGATTTCTGTTTCAACACTGTAAAGTTGGATCCAGGAACTGTAATTTCTTACCCTATGTCCTTCGTGTATTCAGTCGACAAGCAGCTGCGGCCAAAGTACAAAGTTCTTGAGGTTTTGAAGCTAAAAAATCTTCTCAAGAACAAAAAGATTGTTCGGCCCCTTCTACCTTATTCCATTTTGAAGCAGATTCATAAATACTCACAAACAAGACATAGTAGCCACCTTCATCAGAGTTCAACTCAAATAGTTTGTTAG

Protein sequence

MSTNLKPKFVFLQEIGFVGPLLSKLILSNPWLLHRRLASQLKPSSFFLKGTLESDEQVTATSLRCPSLLTYDFKGILKSNIDVLASERTIMQKVDRMIQVVKTLKELGIEPKASTFVHALRVRGGMSDPIWKKKINVLKSLGWSENEIFTLFKRQPMSLARSEEKMRYAADFCFNTVKLDPGTVISYPMSFVYSVDKQLRPKYKVLEVLKLKNLLKNKKIVRPLLPYSILKQIHKYSQTRHSSHLHQSSTQIVC
Homology
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BLAST of MELO3C023837.2 vs. NCBI nr
Match: XP_016902733.1 (PREDICTED: uncharacterized protein LOC107991849 [Cucumis melo])

HSP 1 Score: 439.9 bits (1130), Expect = 5.9e-120
Identity = 224/225 (99.56%), Postives = 225/225 (100.00%), Query Frame = 0 

Query: 1   MSTNLKPKFVFLQEIGFVGPLLSKLILSNPWLLHRRLASQLKPSSFFLKGTLESDEQVTA 60
           MSTNLKPKFVFLQEIGFVGPLLSKLILSNPWLLHRRLASQLKPSSFFLKGTLESDEQVTA
Sbjct: 1   MSTNLKPKFVFLQEIGFVGPLLSKLILSNPWLLHRRLASQLKPSSFFLKGTLESDEQVTA 60

Query: 61  TSLRCPSLLTYDFKGILKSNIDVLASERTIMQKVDRMIQVVKTLKELGIEPKASTFVHAL 120
           TSLRCPSLLTYDFKGILKSNIDVLASERTIMQKVDRMIQVVKTLKELGIEPKASTFVHAL
Sbjct: 61  TSLRCPSLLTYDFKGILKSNIDVLASERTIMQKVDRMIQVVKTLKELGIEPKASTFVHAL 120

Query: 121 RVRGGMSDPIWKKKINVLKSLGWSENEIFTLFKRQPMSLARSEEKMRYAADFCFNTVKLD 180
           RVRGGMSDPIWKKKINVLKSLGWSENEIFTLFKRQPMSLARSEEKMRYAADFCFNTVKLD
Sbjct: 121 RVRGGMSDPIWKKKINVLKSLGWSENEIFTLFKRQPMSLARSEEKMRYAADFCFNTVKLD 180

Query: 181 PGTVISYPMSFVYSVDKQLRPKYKVLEVLKLKNLLKNKKIVRPLL 226
           PGTVISYPMSFVYSVDKQLRPKYKVLEVLKLKNLLKNKKIVRPL+
Sbjct: 181 PGTVISYPMSFVYSVDKQLRPKYKVLEVLKLKNLLKNKKIVRPLV 225

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BLAST of MELO3C023837.2 vs. NCBI nr
Match: XP_016900247.1 (PREDICTED: transcription termination factor MTERF9, chloroplastic-like [Cucumis melo])

HSP 1 Score: 231.1 bits (588), Expect = 4.2e-57
Identity = 127/188 (67.55%), Postives = 138/188 (73.40%), Query Frame = 0 

Query: 52  LESDEQVTATSLRCPSLLTYDFKGILKSNIDVLAS---------------ERTIMQKVDR 111
           LESDEQVTA  LR   LLTYDFKG+LK N DVLAS                R I+QKVDR
Sbjct: 148 LESDEQVTAAILRYTLLLTYDFKGVLKPNADVLASVGVPSRTIAKLIVSNPRIIVQKVDR 207

Query: 112 MIQVVKTLKELGIEPKASTFVHALRVRGGMSDPIWKKKINVLKSLGWSENEIFTLFKRQP 171
           MIQVVK +KELG EPK+  FV AL+ R GMSD  W KKINVLKSLGWSE EIFTLFKR P
Sbjct: 208 MIQVVKMVKELGFEPKSGMFVDALKARIGMSDSTWNKKINVLKSLGWSEKEIFTLFKRMP 267

Query: 172 MSLARSEEKMRYAADFCFNTVKLDPGTVISYPMSFVYSVDKQLRPKYKVLEVLKLKNLLK 225
             LARSE+KMR  ADFCFNTVKL+PGTVISYPM F  S+DK+LRP+YKVLEVLK+K L  
Sbjct: 268 ECLARSEKKMRDVADFCFNTVKLEPGTVISYPMFFKLSIDKRLRPRYKVLEVLKVKKLPT 327

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BLAST of MELO3C023837.2 vs. NCBI nr
Match: XP_008446012.1 (PREDICTED: transcription termination factor MTERF5, chloroplastic-like isoform X1 [Cucumis melo])

HSP 1 Score: 230.7 bits (587), Expect = 5.5e-57
Identity = 130/235 (55.32%), Postives = 150/235 (63.83%), Query Frame = 0 

Query: 1   MSTNLKPKFVFLQEIGFVGPLLSKLILSNPWLLHRRLASQLKPSSFFLKGTLESDEQVTA 60
           +STNLKPKF FLQEIG VGPL                              L SD++VTA
Sbjct: 97  VSTNLKPKFEFLQEIGIVGPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMLGSDKKVTA 156

Query: 61  TSLRCPSLLTYDFKGILKSNIDVLASE---------------RTIMQKVDRMIQVVKTLK 120
              R   LLT +  G ++SNIDVL SE               R++M+KVDRMI+ VKT+K
Sbjct: 157 AICRTSWLLTSNSNGTVRSNIDVLVSEGVPSTNIAQIIALNPRSVMRKVDRMIRAVKTVK 216

Query: 121 ELGIEPKASTFVHALRVRGGMSDPIWKKKINVLKSLGWSENEIFTLFKRQPMSLARSEEK 180
           ELG+EPK   FV+A+ V   MSD  WKKKINV+KSLGWSENEIFT FKR P  L  SEEK
Sbjct: 217 ELGVEPKDGMFVYAVSVAVSMSDSTWKKKINVMKSLGWSENEIFTAFKRFPRFLTCSEEK 276

Query: 181 MRYAADFCFNTVKLDPGTVISYPMSFVYSVDKQLRPKYKVLEVLKLKNLLKNKKI 221
           MR  ADFC NT KLDPGT+ISYP  F YSV K+L+P+YKVLEVLK+KNLLK K I
Sbjct: 277 MRDIADFCLNTAKLDPGTLISYPQFFNYSVHKRLQPRYKVLEVLKMKNLLKTKNI 331

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BLAST of MELO3C023837.2 vs. NCBI nr
Match: XP_008445950.1 (PREDICTED: uncharacterized protein LOC103488825 [Cucumis melo])

HSP 1 Score: 228.0 bits (580), Expect = 3.5e-56
Identity = 133/261 (50.96%), Postives = 157/261 (60.15%), Query Frame = 0 

Query: 11  FLQEIGFVGPLLSKLILSNPWLLHRRLASQLKPS-------------------------- 70
           FL+  GF  P ++KL+   P +L  R+++ LKP                           
Sbjct: 90  FLKSHGFENPQIAKLVSRQPSILQSRVSANLKPKXXXXXXXXXXXXXXXXXXXXXXXXXX 149

Query: 71  ----------SFFLKGTLESDEQVTATSLRCPSLLTYDFKGILKSNIDVLASE------- 130
                            L SDE+VTA   R   LLTYDFKG++KSN DVL SE       
Sbjct: 150 XXXXXXXXXXXXXXXXXLGSDERVTAAICRASWLLTYDFKGVIKSNFDVLVSEGVPSRNI 209

Query: 131 --------RTIMQKVDRMIQVVKTLKELGIEPKASTFVHALRVRGGMSDPIWKKKINVLK 190
                   RTIMQ+VD+MIQVVK +KELGIEPKA  F  A+ VR  MSD  WKKKINV+K
Sbjct: 210 AKMIAWNPRTIMQRVDKMIQVVKNVKELGIEPKAGMFFQAVLVRLQMSDSTWKKKINVMK 269

Query: 191 SLGWSENEIFTLFKRQPMSLARSEEKMRYAADFCFNTVKLDPGTVISYPMSFVYSVDKQL 221
           SLGWSE EI T FKR P+ L  SEEKMR  ADFCFNT KLDPGT+IS P+ F  SV+K+L
Sbjct: 270 SLGWSEKEILTAFKRYPLCLTCSEEKMRDVADFCFNTAKLDPGTLISNPVFFKLSVNKRL 329

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BLAST of MELO3C023837.2 vs. NCBI nr
Match: XP_011656176.1 (PREDICTED: uncharacterized protein LOC105435654 [Cucumis sativus])

HSP 1 Score: 218.8 bits (556), Expect = 2.2e-53
Identity = 117/168 (69.64%), Postives = 129/168 (76.79%), Query Frame = 0 

Query: 70  TYDFKGILKSNIDVLASE---------------RTIMQKVDRMIQVVKTLKELGIEPKAS 129
           T DFKGILKSNID+L SE               RTIM+ VDRMIQ+VKT+KELG EPKA 
Sbjct: 166 TSDFKGILKSNIDLLVSEGVSSRAIATLIVVQPRTIMRTVDRMIQLVKTVKELGFEPKAR 225

Query: 130 TFVHALRVRGGMSDPIWKKKINVLKSLGWSENEIFTLFKRQPMSLARSEEKMRYAADFCF 189
           TFVHALRVRG MSD IWKKKINVLKSLGWSE EIF  FK+ P+ L  SE+KMR  ADFCF
Sbjct: 226 TFVHALRVRGSMSDSIWKKKINVLKSLGWSEKEIFAAFKKFPLYLTCSEKKMRDVADFCF 285

Query: 190 NTVKLDPGTVISYPMSFVYSVDKQLRPKYKVLEVLKLKNLLKNKKIVR 223
           NT KLD GT+I+YP+ F  SVDK+L P YKVLEVLK+KNLLKNKKI R
Sbjct: 286 NTAKLDAGTLITYPVLFKLSVDKRLLPMYKVLEVLKVKNLLKNKKIAR 333

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BLAST of MELO3C023837.2 vs. TAIR10
Match: AT5G07900.1 (Mitochondrial transcription termination factor family protein)

HSP 1 Score: 73.9 bits (180), Expect = 1.6e-13
Identity = 44/139 (31.65%), Postives = 72/139 (51.80%), Query Frame = 0 

Query: 90  IMQKVDRMIQVVKTLKELGIEPKASTFV---HALRVRGGMSDPIWKKKINVLKSLGWSEN 149
           +MQK      + K  +E+G  P+ STFV   HAL  +G  S  IW K   V +  GWSE+
Sbjct: 237 VMQKNHEFQAIAKQAQEMGFNPQKSTFVLAIHALSGKGNKS--IWDKCFEVYQRWGWSED 296

Query: 150 EIFTLFKRQPMSLARSEEKMRYAADFCFNTVKLDPGTVISYPMSFVYSVDKQLRPKYKVL 209
           +I   FK+ P  +  SE K+    ++  N + + P ++   P+   +S++K++ P+  V 
Sbjct: 297 DIMCAFKKHPHCMMLSERKINRTMEYFVNEMNMAPRSIAQCPVVLFFSLEKRIIPRCSVT 356

Query: 210 EVLKLKNLLKNKKIVRPLL 226
           +VL    L+K    +  LL
Sbjct: 357 KVLVSNGLVKEDWSLTSLL 373

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BLAST of MELO3C023837.2 vs. TAIR10
Match: AT5G64950.1 (Mitochondrial transcription termination factor family protein)

HSP 1 Score: 73.6 bits (179), Expect = 2.0e-13
Identity = 56/228 (24.56%), Postives = 104/228 (45.61%), Query Frame = 0 

Query: 5   LKPKFVFLQEIGFVGPLLSKLILSNPWLLHRRLASQLKPSSFFLKGTL-ESDEQVTATSL 64
           L+PK  F ++IGF G  L K +  N  ++   L  +L P+   LK  +    E +     
Sbjct: 107 LEPKLRFFKDIGFTGSGLGKFVSQNSSVVGVSLVKKLIPTVEILKSIVAPKHEDLPVILS 166

Query: 65  RC--------------PSLLTYDFKGILKSNIDVL--ASERTIMQKVDRMIQVVKTLKEL 124
           RC              P++   +  GI+ S +  L     R      +++   V    +L
Sbjct: 167 RCGWLLLSRDPNLFLLPNISYLETCGIVGSQLASLLRRQPRIFNLSEEKLRGYVSRALDL 226

Query: 125 GIEPKASTFVHALRVRGGMSDPIWKKKINVLKSLGWSENEIFTLFKRQPMSLARSEEKMR 184
           G    +   VHA+     +S+  + +K+ +  + G+SE+EI  + +R P  +  SE+K+ 
Sbjct: 227 GFTLNSRMLVHAVISLSSLSEKTFDRKVKLFMANGFSEDEITDIIRRSPGLIRCSEDKLT 286

Query: 185 YAADFCFNTVKLDPGTVISYPMSFVYSVDKQLRPKYKVLEVLKLKNLL 216
              +F    + L+   +   P    Y+++K++ P+ KVL++L+ K LL
Sbjct: 287 LGFEFYLKRMGLEREALAKRPCVLSYNLEKRVIPRLKVLQILREKGLL 334

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BLAST of MELO3C023837.2 vs. TAIR10
Match: AT1G21150.1 (Mitochondrial transcription termination factor family protein)

HSP 1 Score: 68.9 bits (167), Expect = 5.0e-12
Identity = 36/138 (26.09%), Postives = 71/138 (51.45%), Query Frame = 0 

Query: 83  VLASERTIMQKVDRMIQVVKTLKELGIEPKASTFVHALRVRGGMSDPIWKKKINVLKSLG 142
           V AS  T   +  R  +V+  +   G +PK + FVHA+      S+   ++K  + +  G
Sbjct: 217 VQASPFTFFSRERRFNEVLNRVCSYGFDPKKAGFVHAMVAFDCTSESAMERKFKLFQCFG 276

Query: 143 WSENEIFTLFKRQPMSLARSEEKMRYAADFCFNTVKLDPGTVISYPMSFVYSVDKQLRPK 202
           WS+ +      R P  +  S+EK+ Y  ++  N + L    +++ P+    S++K+++P+
Sbjct: 277 WSKEDFVAAIMRFPNCVTVSDEKIMYTLEYLVNNIGLQARDIVARPVVLSLSMEKRIKPR 336

Query: 203 YKVLEVLKLKNLLKNKKI 221
            +V+ +L  K L+K + I
Sbjct: 337 NQVISLLLSKGLVKKEDI 354

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BLAST of MELO3C023837.2 vs. TAIR10
Match: AT1G79220.1 (Mitochondrial transcription termination factor family protein)

HSP 1 Score: 62.8 bits (151), Expect = 3.6e-10
Identity = 58/236 (24.58%), Postives = 114/236 (48.31%), Query Frame = 0 

Query: 5   LKPKFVFLQEIGFVGPLLSKLILSNPWLLHRRLASQLKPSSFFLKGTLESDEQVTATSLR 64
           L+ K   L+ +G     L K++   P     RL    + + F     L S E +    +R
Sbjct: 115 LEFKLSLLKPLGITSSDLVKILNCRPRFFSCRLVLDERINYFM--EILGSKEVLRRVIIR 174

Query: 65  CPSLLTYD-----------FKGILKSNIDVLA---SERTIMQKVDRMIQVVKTLKELGIE 124
            PSL+ YD           +KG+  S  D++A   S  T++ + +   +  + +++ G+ 
Sbjct: 175 NPSLMLYDLDDKIKPAIEYYKGLGFSQQDLVAMLISRPTLIPRTNFNNEKFEYIEKTGVT 234

Query: 125 PKASTFVHALRVRGGMSDPIWKKKINVLKSLGWSENEIFTLFKRQPMSLARSEEKMRYAA 184
            ++  F +   + G       ++K+  L+  G+SE EI+ L+ + P+ L+ S EK++   
Sbjct: 235 RESKMFKYVAVIIGVSRMETIEEKVRNLEKFGFSEEEIWHLYGKCPILLSLSVEKVQRNM 294

Query: 185 DFCFNTVKLDPGTVISYPMSFVYSVDKQLRPK----YKVLEVLKLKNLLKNKKIVR 223
            F   ++KL   +V+ +P   + +++ +L+P+     +VLE ++LK L+K   I R
Sbjct: 295 TFVIASMKLPAHSVVKHPCLLLLNLESRLKPRADLVKRVLE-MRLKPLIKEVSIFR 347

[Close]
BLAST of MELO3C023837.2 vs. TAIR10
Match: AT1G62120.1 (Mitochondrial transcription termination factor family protein)

HSP 1 Score: 61.2 bits (147), Expect = 1.0e-09
Identity = 60/263 (22.81%), Postives = 108/263 (41.06%), Query Frame = 0 

Query: 4   NLKPKFVFLQEIGFVGPLLSKLILSNPWLLHRRLASQLKPSSFFLKGTLESDEQVTATSL 63
           +L PK  FLQ IG     L++ + + P +L +R    L     F+K  +E+D+      L
Sbjct: 123 SLAPKLQFLQSIGASSSELTETVSAVPKILGKRKGKSLSRYYDFVKVIIEADKSSKLEKL 182

Query: 64  ------------RCPSLLTYDFKGILKSNI-DVLASERTIMQKVDRMIQVVKTLKELGIE 123
                       +  +LL     G+ +  +  +L S+   +   ++  + +K   E+G +
Sbjct: 183 CHSLPEGSKQENKIRNLLVLREMGVPQRLLFSLLISDAGDVCGKEKFKESLKKAVEIGFD 242

Query: 124 PKASTFVHALRVRGGMSDPIWKKKINVLKSLGWSENEIFTLFKRQPMSLAR--------- 183
           P  +TFV AL V  G+SD   + K N  K LG + ++++ +FK+ P  L +         
Sbjct: 243 PTTATFVKALNVLYGLSDKGIENKFNACKRLGLAVDDVWAMFKKWPNILTKXXXXXXXXX 302

Query: 184 --------------------------SEEKMRYAADFCFNTVKLDPGTVISYPMSFVYSV 219
                                         M+   +F    +      V S P    YS+
Sbjct: 303 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMKTKTEFLVTEMNWPLKAVASIPQVLGYSL 362

[Close]
BLAST of MELO3C023837.2 vs. TrEMBL
Match: tr|A0A1S4E3D5|A0A1S4E3D5_CUCME (uncharacterized protein LOC107991849 OS=Cucumis melo OX=3656 GN=LOC107991849 PE=4 SV=1)

HSP 1 Score: 439.9 bits (1130), Expect = 3.9e-120
Identity = 224/225 (99.56%), Postives = 225/225 (100.00%), Query Frame = 0 

Query: 1   MSTNLKPKFVFLQEIGFVGPLLSKLILSNPWLLHRRLASQLKPSSFFLKGTLESDEQVTA 60
           MSTNLKPKFVFLQEIGFVGPLLSKLILSNPWLLHRRLASQLKPSSFFLKGTLESDEQVTA
Sbjct: 1   MSTNLKPKFVFLQEIGFVGPLLSKLILSNPWLLHRRLASQLKPSSFFLKGTLESDEQVTA 60

Query: 61  TSLRCPSLLTYDFKGILKSNIDVLASERTIMQKVDRMIQVVKTLKELGIEPKASTFVHAL 120
           TSLRCPSLLTYDFKGILKSNIDVLASERTIMQKVDRMIQVVKTLKELGIEPKASTFVHAL
Sbjct: 61  TSLRCPSLLTYDFKGILKSNIDVLASERTIMQKVDRMIQVVKTLKELGIEPKASTFVHAL 120

Query: 121 RVRGGMSDPIWKKKINVLKSLGWSENEIFTLFKRQPMSLARSEEKMRYAADFCFNTVKLD 180
           RVRGGMSDPIWKKKINVLKSLGWSENEIFTLFKRQPMSLARSEEKMRYAADFCFNTVKLD
Sbjct: 121 RVRGGMSDPIWKKKINVLKSLGWSENEIFTLFKRQPMSLARSEEKMRYAADFCFNTVKLD 180

Query: 181 PGTVISYPMSFVYSVDKQLRPKYKVLEVLKLKNLLKNKKIVRPLL 226
           PGTVISYPMSFVYSVDKQLRPKYKVLEVLKLKNLLKNKKIVRPL+
Sbjct: 181 PGTVISYPMSFVYSVDKQLRPKYKVLEVLKLKNLLKNKKIVRPLV 225

[Close]
BLAST of MELO3C023837.2 vs. TrEMBL
Match: tr|A0A1S4DW83|A0A1S4DW83_CUCME (transcription termination factor MTERF9, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103488770 PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 2.8e-57
Identity = 127/188 (67.55%), Postives = 138/188 (73.40%), Query Frame = 0 

Query: 52  LESDEQVTATSLRCPSLLTYDFKGILKSNIDVLAS---------------ERTIMQKVDR 111
           LESDEQVTA  LR   LLTYDFKG+LK N DVLAS                R I+QKVDR
Sbjct: 148 LESDEQVTAAILRYTLLLTYDFKGVLKPNADVLASVGVPSRTIAKLIVSNPRIIVQKVDR 207

Query: 112 MIQVVKTLKELGIEPKASTFVHALRVRGGMSDPIWKKKINVLKSLGWSENEIFTLFKRQP 171
           MIQVVK +KELG EPK+  FV AL+ R GMSD  W KKINVLKSLGWSE EIFTLFKR P
Sbjct: 208 MIQVVKMVKELGFEPKSGMFVDALKARIGMSDSTWNKKINVLKSLGWSEKEIFTLFKRMP 267

Query: 172 MSLARSEEKMRYAADFCFNTVKLDPGTVISYPMSFVYSVDKQLRPKYKVLEVLKLKNLLK 225
             LARSE+KMR  ADFCFNTVKL+PGTVISYPM F  S+DK+LRP+YKVLEVLK+K L  
Sbjct: 268 ECLARSEKKMRDVADFCFNTVKLEPGTVISYPMFFKLSIDKRLRPRYKVLEVLKVKKLPT 327

[Close]
BLAST of MELO3C023837.2 vs. TrEMBL
Match: tr|A0A1S3BEV9|A0A1S3BEV9_CUCME (transcription termination factor MTERF5, chloroplastic-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103488866 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 3.6e-57
Identity = 130/235 (55.32%), Postives = 150/235 (63.83%), Query Frame = 0 

Query: 1   MSTNLKPKFVFLQEIGFVGPLLSKLILSNPWLLHRRLASQLKPSSFFLKGTLESDEQVTA 60
           +STNLKPKF FLQEIG VGPL                              L SD++VTA
Sbjct: 97  VSTNLKPKFEFLQEIGIVGPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMLGSDKKVTA 156

Query: 61  TSLRCPSLLTYDFKGILKSNIDVLASE---------------RTIMQKVDRMIQVVKTLK 120
              R   LLT +  G ++SNIDVL SE               R++M+KVDRMI+ VKT+K
Sbjct: 157 AICRTSWLLTSNSNGTVRSNIDVLVSEGVPSTNIAQIIALNPRSVMRKVDRMIRAVKTVK 216

Query: 121 ELGIEPKASTFVHALRVRGGMSDPIWKKKINVLKSLGWSENEIFTLFKRQPMSLARSEEK 180
           ELG+EPK   FV+A+ V   MSD  WKKKINV+KSLGWSENEIFT FKR P  L  SEEK
Sbjct: 217 ELGVEPKDGMFVYAVSVAVSMSDSTWKKKINVMKSLGWSENEIFTAFKRFPRFLTCSEEK 276

Query: 181 MRYAADFCFNTVKLDPGTVISYPMSFVYSVDKQLRPKYKVLEVLKLKNLLKNKKI 221
           MR  ADFC NT KLDPGT+ISYP  F YSV K+L+P+YKVLEVLK+KNLLK K I
Sbjct: 277 MRDIADFCLNTAKLDPGTLISYPQFFNYSVHKRLQPRYKVLEVLKMKNLLKTKNI 331

[Close]
BLAST of MELO3C023837.2 vs. TrEMBL
Match: tr|A0A1S3BEK7|A0A1S3BEK7_CUCME (uncharacterized protein LOC103488825 OS=Cucumis melo OX=3656 GN=LOC103488825 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 2.3e-56
Identity = 133/261 (50.96%), Postives = 157/261 (60.15%), Query Frame = 0 

Query: 11  FLQEIGFVGPLLSKLILSNPWLLHRRLASQLKPS-------------------------- 70
           FL+  GF  P ++KL+   P +L  R+++ LKP                           
Sbjct: 90  FLKSHGFENPQIAKLVSRQPSILQSRVSANLKPKXXXXXXXXXXXXXXXXXXXXXXXXXX 149

Query: 71  ----------SFFLKGTLESDEQVTATSLRCPSLLTYDFKGILKSNIDVLASE------- 130
                            L SDE+VTA   R   LLTYDFKG++KSN DVL SE       
Sbjct: 150 XXXXXXXXXXXXXXXXXLGSDERVTAAICRASWLLTYDFKGVIKSNFDVLVSEGVPSRNI 209

Query: 131 --------RTIMQKVDRMIQVVKTLKELGIEPKASTFVHALRVRGGMSDPIWKKKINVLK 190
                   RTIMQ+VD+MIQVVK +KELGIEPKA  F  A+ VR  MSD  WKKKINV+K
Sbjct: 210 AKMIAWNPRTIMQRVDKMIQVVKNVKELGIEPKAGMFFQAVLVRLQMSDSTWKKKINVMK 269

Query: 191 SLGWSENEIFTLFKRQPMSLARSEEKMRYAADFCFNTVKLDPGTVISYPMSFVYSVDKQL 221
           SLGWSE EI T FKR P+ L  SEEKMR  ADFCFNT KLDPGT+IS P+ F  SV+K+L
Sbjct: 270 SLGWSEKEILTAFKRYPLCLTCSEEKMRDVADFCFNTAKLDPGTLISNPVFFKLSVNKRL 329

[Close]
BLAST of MELO3C023837.2 vs. TrEMBL
Match: tr|A0A1S4DW22|A0A1S4DW22_CUCME (transcription termination factor MTERF5, chloroplastic-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103488866 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.9e-53
Identity = 120/201 (59.70%), Postives = 141/201 (70.15%), Query Frame = 0 

Query: 35  RRLASQLKPSSFFLKGTLESDEQVTATSLRCPSLLTYDFKGILKSNIDVLASE------- 94
           R L SQLKP+   +K  L SD++VTA   R   LLT +  G ++SNIDVL SE       
Sbjct: 39  RSLDSQLKPTFRLIKEMLGSDKKVTAAICRTSWLLTSNSNGTVRSNIDVLVSEGVPSTNI 98

Query: 95  --------RTIMQKVDRMIQVVKTLKELGIEPKASTFVHALRVRGGMSDPIWKKKINVLK 154
                   R++M+KVDRMI+ VKT+KELG+EPK   FV+A+ V   MSD  WKKKINV+K
Sbjct: 99  AQIIALNPRSVMRKVDRMIRAVKTVKELGVEPKDGMFVYAVSVAVSMSDSTWKKKINVMK 158

Query: 155 SLGWSENEIFTLFKRQPMSLARSEEKMRYAADFCFNTVKLDPGTVISYPMSFVYSVDKQL 214
           SLGWSENEIFT FKR P  L  SEEKMR  ADFC NT KLDPGT+ISYP  F YSV K+L
Sbjct: 159 SLGWSENEIFTAFKRFPRFLTCSEEKMRDIADFCLNTAKLDPGTLISYPQFFNYSVHKRL 218

Query: 215 RPKYKVLEVLKLKNLLKNKKI 221
           +P+YKVLEVLK+KNLLK K I
Sbjct: 219 QPRYKVLEVLKMKNLLKTKNI 239

The following BLAST results are available for this feature:
BLAST of MELO3C023837.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_016902733.15.9e-12099.56PREDICTED: uncharacterized protein LOC107991849 [Cucumis melo][more]
XP_016900247.14.2e-5767.55PREDICTED: transcription termination factor MTERF9, chloroplastic-like [Cucumis ... [more]
XP_008446012.15.5e-5755.32PREDICTED: transcription termination factor MTERF5, chloroplastic-like isoform X... [more]
XP_008445950.13.5e-5650.96PREDICTED: uncharacterized protein LOC103488825 [Cucumis melo][more]
XP_011656176.12.2e-5369.64PREDICTED: uncharacterized protein LOC105435654 [Cucumis sativus][more]
BLAST of MELO3C023837.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G07900.11.6e-1331.65Mitochondrial transcription termination factor family protein[more]
AT5G64950.12.0e-1324.56Mitochondrial transcription termination factor family protein[more]
AT1G21150.15.0e-1226.09Mitochondrial transcription termination factor family protein[more]
AT1G79220.13.6e-1024.58Mitochondrial transcription termination factor family protein[more]
AT1G62120.11.0e-0922.81Mitochondrial transcription termination factor family protein[more]
BLAST of MELO3C023837.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C023837.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4E3D5|A0A1S4E3D5_CUCME3.9e-12099.56uncharacterized protein LOC107991849 OS=Cucumis melo OX=3656 GN=LOC107991849 PE=... [more]
tr|A0A1S4DW83|A0A1S4DW83_CUCME2.8e-5767.55transcription termination factor MTERF9, chloroplastic-like OS=Cucumis melo OX=3... [more]
tr|A0A1S3BEV9|A0A1S3BEV9_CUCME3.6e-5755.32transcription termination factor MTERF5, chloroplastic-like isoform X1 OS=Cucumi... [more]
tr|A0A1S3BEK7|A0A1S3BEK7_CUCME2.3e-5650.96uncharacterized protein LOC103488825 OS=Cucumis melo OX=3656 GN=LOC103488825 PE=... [more]
tr|A0A1S4DW22|A0A1S4DW22_CUCME1.9e-5359.70transcription termination factor MTERF5, chloroplastic-like isoform X2 OS=Cucumi... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003690double-stranded DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR038538MTERF_sf
IPR003690MTERF
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005575 cellular_component
molecular_function GO:0003690 double-stranded DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C023837.2.1MELO3C023837.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003690Transcription termination factor, mitochondrial/chloroplasticSMARTSM00733mt_12coord: 114..144
e-value: 1100.0
score: 3.5
coord: 23..55
e-value: 110.0
score: 11.3
coord: 181..212
e-value: 0.66
score: 19.0
coord: 59..91
e-value: 1200.0
score: 3.1
IPR003690Transcription termination factor, mitochondrial/chloroplasticPFAMPF02536mTERFcoord: 3..211
e-value: 8.7E-18
score: 64.3
IPR038538MTERF superfamily, mitochondrial/chloroplasticGENE3DG3DSA:1.25.70.10coord: 1..249
e-value: 5.0E-26
score: 93.5
NoneNo IPR availablePANTHERPTHR13068CGI-12 PROTEIN-RELATEDcoord: 3..235
NoneNo IPR availablePANTHERPTHR13068:SF20SUBFAMILY NOT NAMEDcoord: 3..235

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C023837.2Cucumber (Gy14) v2cgybmedB233
MELO3C023837.2Cucumber (Gy14) v2cgybmedB310
MELO3C023837.2Cucumber (Gy14) v2cgybmedB317
MELO3C023837.2Cucumber (Gy14) v1cgymedB057
MELO3C023837.2Cucumber (Gy14) v1cgymedB285
MELO3C023837.2Cucurbita maxima (Rimu)cmamedB302
MELO3C023837.2Cucurbita maxima (Rimu)cmamedB671
MELO3C023837.2Cucurbita maxima (Rimu)cmamedB738
MELO3C023837.2Cucurbita maxima (Rimu)cmamedB739
MELO3C023837.2Cucurbita moschata (Rifu)cmomedB289
MELO3C023837.2Cucurbita moschata (Rifu)cmomedB661
MELO3C023837.2Cucurbita moschata (Rifu)cmomedB730
MELO3C023837.2Cucurbita moschata (Rifu)cmomedB733
MELO3C023837.2Cucurbita moschata (Rifu)cmomedB734
MELO3C023837.2Cucurbita moschata (Rifu)cmomedB871
MELO3C023837.2Cucurbita pepo (Zucchini)cpemedB056
MELO3C023837.2Cucurbita pepo (Zucchini)cpemedB188
MELO3C023837.2Cucurbita pepo (Zucchini)cpemedB436
MELO3C023837.2Cucurbita pepo (Zucchini)cpemedB438
MELO3C023837.2Cucurbita pepo (Zucchini)cpemedB513
MELO3C023837.2Wild cucumber (PI 183967)cpimedB260
MELO3C023837.2Wild cucumber (PI 183967)cpimedB350
MELO3C023837.2Wild cucumber (PI 183967)cpimedB357
MELO3C023837.2Cucumber (Chinese Long) v2cumedB261
MELO3C023837.2Cucumber (Chinese Long) v2cumedB348
MELO3C023837.2Cucumber (Chinese Long) v2cumedB355
MELO3C023837.2Melon (DHL92) v3.6.1medmedB003
MELO3C023837.2Melon (DHL92) v3.6.1medmedB033
MELO3C023837.2Bottle gourd (USVL1VR-Ls)lsimedB129
MELO3C023837.2Bottle gourd (USVL1VR-Ls)lsimedB178
MELO3C023837.2Bottle gourd (USVL1VR-Ls)lsimedB297
MELO3C023837.2Watermelon (Charleston Gray)medwcgB039
MELO3C023837.2Watermelon (Charleston Gray)medwcgB060
MELO3C023837.2Watermelon (Charleston Gray)medwcgB064
MELO3C023837.2Watermelon (97103) v1medwmB043
MELO3C023837.2Watermelon (97103) v1medwmB057
MELO3C023837.2Watermelon (97103) v1medwmB068
MELO3C023837.2Silver-seed gourdcarmedB0275
MELO3C023837.2Silver-seed gourdcarmedB0670
MELO3C023837.2Silver-seed gourdcarmedB0920
MELO3C023837.2Silver-seed gourdcarmedB0864
MELO3C023837.2Cucumber (Chinese Long) v3cucmedB264
MELO3C023837.2Cucumber (Chinese Long) v3cucmedB362
MELO3C023837.2Cucumber (Chinese Long) v3cucmedB367
MELO3C023837.2Watermelon (97103) v2medwmbB055
MELO3C023837.2Watermelon (97103) v2medwmbB061
MELO3C023837.2Watermelon (97103) v2medwmbB071
MELO3C023837.2Wax gourdmedwgoB065
MELO3C023837.2Wax gourdmedwgoB082