MELO3C023803 (gene) Melon (DHL92) v3.5.1

NameMELO3C023803
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionRetrotransposon protein, putative, Ty3-gypsy subclass
Locationchr6 : 16550860 .. 16551078 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTATCCCTTTGGTCGAAGAGGAAATTTTGAAGGAACTAGTTATGGAGGCAATCCAGTATGTGTTAGACGAATACCAAGACATAATACTAGAGAGTTTGTCTAAGACTTTACCTCCACGAATAGGGATAAATTATGAGATTGAACTTCTACCTCGGACAAGGCCTCCTACAAAGAATGTGTATCACATGGCACCATCAGAATTGGTAGAACTTTGA

mRNA sequence

ATGGCTATCCCTTTGGTCGAAGAGGAAATTTTGAAGGAACTAGTTATGGAGGCAATCCAGTATGTGTTAGACGAATACCAAGACATAATACTAGAGAGTTTGTCTAAGACTTTACCTCCACGAATAGGGATAAATTATGAGATTGAACTTCTACCTCGGACAAGGCCTCCTACAAAGAATGTGTATCACATGGCACCATCAGAATTGGTAGAACTTTGA

Coding sequence (CDS)

ATGGCTATCCCTTTGGTCGAAGAGGAAATTTTGAAGGAACTAGTTATGGAGGCAATCCAGTATGTGTTAGACGAATACCAAGACATAATACTAGAGAGTTTGTCTAAGACTTTACCTCCACGAATAGGGATAAATTATGAGATTGAACTTCTACCTCGGACAAGGCCTCCTACAAAGAATGTGTATCACATGGCACCATCAGAATTGGTAGAACTTTGA

Protein sequence

MAIPLVEEEILKELVMEAIQYVLDEYQDIILESLSKTLPPRIGINYEIELLPRTRPPTKNVYHMAPSELVEL*
BLAST of MELO3C023803 vs. TrEMBL
Match: A0A061F392_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_024329 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 4.5e-07
Identity = 27/72 (37.50%), Postives = 49/72 (68.06%), Query Frame = 1

Query: 1   MAIPLVEEEILKELVMEAIQYVLDEYQDIILESLSKTLPPRIGINYEIELLPRTRPPTKN 60
           +A+ + + E  +  + + ++ VL+++Q+++ E L + LPP+  +++EIELLPR +PP K 
Sbjct: 272 VAMSIYKGENNRNPIHQEVKLVLEKFQNMMPEQLPRVLPPQQAVHHEIELLPRVKPPAKG 331

Query: 61  VYHMAPSELVEL 73
            Y MAP +L EL
Sbjct: 332 PYRMAPPKLTEL 343

BLAST of MELO3C023803 vs. TrEMBL
Match: A0A061E423_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_008633 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 5.0e-06
Identity = 26/52 (50.00%), Postives = 36/52 (69.23%), Query Frame = 1

Query: 15 VMEAIQYVLDEYQDIILESLSKTLPPRIGINYEIELLPRTRPPTKNVYHMAP 67
          + E ++ VL+E+QD++ E L K LPPR  I++EIELLP  +P  K  Y MAP
Sbjct: 15 ISEGVKLVLEEFQDMMPEQLPKALPPRQAIDHEIELLPNVKPLAKRPYRMAP 66

BLAST of MELO3C023803 vs. NCBI nr
Match: gi|659114583|ref|XP_008457127.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103496873 [Cucumis melo])

HSP 1 Score: 70.5 bits (171), Expect = 1.4e-09
Identity = 37/72 (51.39%), Postives = 48/72 (66.67%), Query Frame = 1

Query: 1   MAIPLVEEEILKELVMEAIQYVLDEYQDIILESLSKTLPPRIGINYEIELLPRTRPPTKN 60
           MAIPL   E   E V   I  VL++Y+D++ +S  K+LPPR  I++EIEL+P T+P  KN
Sbjct: 67  MAIPLNSSENSGETVPTEIVRVLEKYRDVMPDSFPKSLPPRRMIDHEIELVPGTKPRAKN 126

Query: 61  VYHMAPSELVEL 73
            Y MAP EL EL
Sbjct: 127 AYRMAPPELAEL 138

BLAST of MELO3C023803 vs. NCBI nr
Match: gi|698456954|ref|XP_009780734.1| (PREDICTED: uncharacterized protein LOC104229738 [Nicotiana sylvestris])

HSP 1 Score: 66.2 bits (160), Expect = 2.6e-08
Identity = 31/71 (43.66%), Postives = 48/71 (67.61%), Query Frame = 1

Query: 2   AIPLVEEEILKELVMEAIQYVLDEYQDIILESLSKTLPPRIGINYEIELLPRTRPPTKNV 61
           A+  +EE+ + E +   +Q VL+E +D++ E L K LPPR  ++++IEL+P T+PP   +
Sbjct: 341 AVTEIEEDKVDEALPPCVQQVLNENKDVMPEDLLKRLPPRREVDHQIELIPGTKPPAMGL 400

Query: 62  YHMAPSELVEL 73
           Y MAP EL EL
Sbjct: 401 YRMAPPELEEL 411

BLAST of MELO3C023803 vs. NCBI nr
Match: gi|729320756|ref|XP_010533333.1| (PREDICTED: uncharacterized protein LOC104809135, partial [Tarenaya hassleriana])

HSP 1 Score: 62.0 bits (149), Expect = 5.0e-07
Identity = 28/54 (51.85%), Postives = 38/54 (70.37%), Query Frame = 1

Query: 19  IQYVLDEYQDIILESLSKTLPPRIGINYEIELLPRTRPPTKNVYHMAPSELVEL 73
           ++ VLD + D++ E L K LPPR GI+++IEL+P T+PP    Y MAP EL EL
Sbjct: 612 VRVVLDSFADVMPEELPKKLPPRRGIDHQIELIPGTKPPAMAPYRMAPPELAEL 665

BLAST of MELO3C023803 vs. NCBI nr
Match: gi|590634880|ref|XP_007028492.1| (Uncharacterized protein TCM_024329 [Theobroma cacao])

HSP 1 Score: 61.6 bits (148), Expect = 6.5e-07
Identity = 27/72 (37.50%), Postives = 49/72 (68.06%), Query Frame = 1

Query: 1   MAIPLVEEEILKELVMEAIQYVLDEYQDIILESLSKTLPPRIGINYEIELLPRTRPPTKN 60
           +A+ + + E  +  + + ++ VL+++Q+++ E L + LPP+  +++EIELLPR +PP K 
Sbjct: 272 VAMSIYKGENNRNPIHQEVKLVLEKFQNMMPEQLPRVLPPQQAVHHEIELLPRVKPPAKG 331

Query: 61  VYHMAPSELVEL 73
            Y MAP +L EL
Sbjct: 332 PYRMAPPKLTEL 343

BLAST of MELO3C023803 vs. NCBI nr
Match: gi|802621793|ref|XP_012076137.1| (PREDICTED: uncharacterized protein LOC105637312 [Jatropha curcas])

HSP 1 Score: 60.5 bits (145), Expect = 1.4e-06
Identity = 31/67 (46.27%), Postives = 44/67 (65.67%), Query Frame = 1

Query: 8   EEIL--KELVMEAIQYVLDEYQDIILESLSKTLPPRIGINYEIELLPRTRPPTKNVYHMA 67
           EE++  K+ + E +Q VLDEY+D++   L K LPPR  I+++IEL P  +PP    Y M+
Sbjct: 482 EEVINPKQSLPECVQTVLDEYKDVMPPQLPKKLPPRREIDHQIELEPGAKPPAMAPYRMS 541

Query: 68  PSELVEL 73
           P EL EL
Sbjct: 542 PPELEEL 548

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A061F392_THECC4.5e-0737.50Uncharacterized protein OS=Theobroma cacao GN=TCM_024329 PE=4 SV=1[more]
A0A061E423_THECC5.0e-0650.00Uncharacterized protein OS=Theobroma cacao GN=TCM_008633 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|659114583|ref|XP_008457127.1|1.4e-0951.39PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103496873 [Cucumis me... [more]
gi|698456954|ref|XP_009780734.1|2.6e-0843.66PREDICTED: uncharacterized protein LOC104229738 [Nicotiana sylvestris][more]
gi|729320756|ref|XP_010533333.1|5.0e-0751.85PREDICTED: uncharacterized protein LOC104809135, partial [Tarenaya hassleriana][more]
gi|590634880|ref|XP_007028492.1|6.5e-0737.50Uncharacterized protein TCM_024329 [Theobroma cacao][more]
gi|802621793|ref|XP_012076137.1|1.4e-0646.27PREDICTED: uncharacterized protein LOC105637312 [Jatropha curcas][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C023803T1MELO3C023803T1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None