MELO3C023801.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C023801.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Unknown protein
Location	chr06 : 19367977 .. 19368219 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGGAAACTCAATCCCACAACAAAGGGAAAATCCTCTATCCCTTGTCGATGACCCAACTAGCCAAGATAAACCCCTAAGCCCTGAAGAATCGAATCAAGATATCTTCCAAGATTCCATCTCAGACTCTGCCACATTTATTGACGATGCGTTCAAAGAAGAAGAAGATGAGGCGAGAAGCCCAGTTCTATCCCCAAAAGGAAAAGAAGTTTTAAAGGAGGAAGCAAATGACCCACTCTAA

mRNA sequence

ATGGAAGGAAACTCAATCCCACAACAAAGGGAAAATCCTCTATCCCTTGTCGATGACCCAACTAGCCAAGATAAACCCCTAAGCCCTGAAGAATCGAATCAAGATATCTTCCAAGATTCCATCTCAGACTCTGCCACATTTATTGACGATGCGTTCAAAGAAGAAGAAGATGAGGCGAGAAGCCCAGTTCTATCCCCAAAAGGAAAAGAAGTTTTAAAGGAGGAAGCAAATGACCCACTCTAA

Coding sequence (CDS)

ATGGAAGGAAACTCAATCCCACAACAAAGGGAAAATCCTCTATCCCTTGTCGATGACCCAACTAGCCAAGATAAACCCCTAAGCCCTGAAGAATCGAATCAAGATATCTTCCAAGATTCCATCTCAGACTCTGCCACATTTATTGACGATGCGTTCAAAGAAGAAGAAGATGAGGCGAGAAGCCCAGTTCTATCCCCAAAAGGAAAAGAAGTTTTAAAGGAGGAAGCAAATGACCCACTCTAA

Protein sequence

MEGNSIPQQRENPLSLVDDPTSQDKPLSPEESNQDIFQDSISDSATFIDDAFKEEEDEARSPVLSPKGKEVLKEEANDPL

Homology

[Close]

BLAST of MELO3C023801.2 vs. NCBI nr
Match: ADN34138.1 (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 56.2 bits (134), Expect = 5.8e-05
Identity = 36/80 (45.00%), Postives = 46/80 (57.50%), Query Frame = 0


Query: 1   MEGNSIPQQRENPLSLVDDPTSQDKPLSPEESNQDIFQDSISDSATFIDDAFKEEEDEAR 60
           + G S+P Q E P  L   P +Q KP SPE SNQD+F ++     T +DDA KE E+   
Sbjct: 49  LAGTSLPCQEETPQPLDAIPINQAKPPSPETSNQDVFHETFYVPTTLLDDATKESEE--- 108

Query: 61  SPVLSPKGKEVLKEEANDPL 81
                 KGKEVL+E  +DPL
Sbjct: 109 ----GGKGKEVLEEAIDDPL 121

[Close]

BLAST of MELO3C023801.2 vs. TrEMBL
Match: tr|E5GCD9|E5GCD9_CUCME (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 3.8e-05
Identity = 36/80 (45.00%), Postives = 46/80 (57.50%), Query Frame = 0


Query: 1   MEGNSIPQQRENPLSLVDDPTSQDKPLSPEESNQDIFQDSISDSATFIDDAFKEEEDEAR 60
           + G S+P Q E P  L   P +Q KP SPE SNQD+F ++     T +DDA KE E+   
Sbjct: 49  LAGTSLPCQEETPQPLDAIPINQAKPPSPETSNQDVFHETFYVPTTLLDDATKESEE--- 108

Query: 61  SPVLSPKGKEVLKEEANDPL 81
                 KGKEVL+E  +DPL
Sbjct: 109 ----GGKGKEVLEEAIDDPL 121

The following BLAST results are available for this feature:

BLAST of MELO3C023801.2 vs. NCBI nr


Match Name	E-value	Identity	Description
ADN34138.1	5.8e-05	45.00	hypothetical protein [Cucumis melo subsp. melo]	[more]

BLAST of MELO3C023801.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C023801.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C023801.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|E5GCD9\|E5GCD9_CUCME	3.8e-05	45.00	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C023801.2.1	MELO3C023801.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..80
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..45
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..80

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C023801.2	Cucumber (Gy14) v2	cgybmedB206
MELO3C023801.2	Cucumber (Gy14) v1	cgymedB004
MELO3C023801.2	Cucurbita maxima (Rimu)	cmamedB270
MELO3C023801.2	Cucurbita maxima (Rimu)	cmamedB497
MELO3C023801.2	Cucurbita moschata (Rifu)	cmomedB255
MELO3C023801.2	Cucurbita moschata (Rifu)	cmomedB484
MELO3C023801.2	Cucurbita pepo (Zucchini)	cpemedB628
MELO3C023801.2	Cucurbita pepo (Zucchini)	cpemedB690
MELO3C023801.2	Wild cucumber (PI 183967)	cpimedB229
MELO3C023801.2	Cucumber (Chinese Long) v2	cumedB228
MELO3C023801.2	Bottle gourd (USVL1VR-Ls)	lsimedB399
MELO3C023801.2	Watermelon (Charleston Gray)	medwcgB420
MELO3C023801.2	Watermelon (Charleston Gray)	medwcgB427
MELO3C023801.2	Watermelon (97103) v1	medwmB454
MELO3C023801.2	Silver-seed gourd	carmedB0490
MELO3C023801.2	Silver-seed gourd	carmedB0772
MELO3C023801.2	Cucumber (Chinese Long) v3	cucmedB235
MELO3C023801.2	Watermelon (97103) v2	medwmbB427
MELO3C023801.2	Watermelon (97103) v2	medwmbB431
MELO3C023801.2	Wax gourd	medwgoB535