MELO3C023801 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C023801
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionRNA binding (RRM/RBD/RNP motifs) family protein
Locationchr6 : 16580530 .. 16580772 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGGAAACTCAATCCCACAACAAAGGGAAAATCCTCTATCCCTTGTCGATGACCCAACTAGCCAAGATAAACCCCTAAGCCCTGAAGAATCGAATCAAGATATCTTCCAAGATTCCATCTCAGACTCTGCCACATTTATTGACGATGCGTTCAAAGAAGAAGAAGATGAGGCGAGAAGCCCAGTTCTATCCCCAAAAGGAAAAGAAGTTTTAAAGGAGGAAGCAAATGACCCACTCTAA

mRNA sequence

ATGGAAGGAAACTCAATCCCACAACAAAGGGAAAATCCTCTATCCCTTGTCGATGACCCAACTAGCCAAGATAAACCCCTAAGCCCTGAAGAATCGAATCAAGATATCTTCCAAGATTCCATCTCAGACTCTGCCACATTTATTGACGATGCGTTCAAAGAAGAAGAAGATGAGGCGAGAAGCCCAGTTCTATCCCCAAAAGGAAAAGAAGTTTTAAAGGAGGAAGCAAATGACCCACTCTAA

Coding sequence (CDS)

ATGGAAGGAAACTCAATCCCACAACAAAGGGAAAATCCTCTATCCCTTGTCGATGACCCAACTAGCCAAGATAAACCCCTAAGCCCTGAAGAATCGAATCAAGATATCTTCCAAGATTCCATCTCAGACTCTGCCACATTTATTGACGATGCGTTCAAAGAAGAAGAAGATGAGGCGAGAAGCCCAGTTCTATCCCCAAAAGGAAAAGAAGTTTTAAAGGAGGAAGCAAATGACCCACTCTAA

Protein sequence

MEGNSIPQQRENPLSLVDDPTSQDKPLSPEESNQDIFQDSISDSATFIDDAFKEEEDEARSPVLSPKGKEVLKEEANDPL*
Homology
[Close]
BLAST of MELO3C023801 vs. TrEMBL
Match: E5GCD9_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 4.5e-08
Identity = 36/80 (45.00%), Postives = 46/80 (57.50%), Query Frame = 1 

Query: 1   MEGNSIPQQRENPLSLVDDPTSQDKPLSPEESNQDIFQDSISDSATFIDDAFKEEEDEAR 60
           + G S+P Q E P  L   P +Q KP SPE SNQD+F ++     T +DDA KE E+   
Sbjct: 49  LAGTSLPCQEETPQPLDAIPINQAKPPSPETSNQDVFHETFYVPTTLLDDATKESEE--- 108

Query: 61  SPVLSPKGKEVLKEEANDPL 81
                 KGKEVL+E  +DPL
Sbjct: 109 ----GGKGKEVLEEAIDDPL 121

[Close]
BLAST of MELO3C023801 vs. NCBI nr
Match: gi|307136315|gb|ADN34138.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 65.1 bits (157), Expect = 6.5e-08
Identity = 36/80 (45.00%), Postives = 46/80 (57.50%), Query Frame = 1 

Query: 1   MEGNSIPQQRENPLSLVDDPTSQDKPLSPEESNQDIFQDSISDSATFIDDAFKEEEDEAR 60
           + G S+P Q E P  L   P +Q KP SPE SNQD+F ++     T +DDA KE E+   
Sbjct: 49  LAGTSLPCQEETPQPLDAIPINQAKPPSPETSNQDVFHETFYVPTTLLDDATKESEE--- 108

Query: 61  SPVLSPKGKEVLKEEANDPL 81
                 KGKEVL+E  +DPL
Sbjct: 109 ----GGKGKEVLEEAIDDPL 121

The following BLAST results are available for this feature:
BLAST of MELO3C023801 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GCD9_CUCME4.5e-0845.00Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
BLAST of MELO3C023801 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|307136315|gb|ADN34138.1|6.5e-0845.00hypothetical protein [Cucumis melo subsp. melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C023801T1MELO3C023801T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C023801Cucurbita pepo (Zucchini)cpemeB529
MELO3C023801Cucurbita pepo (Zucchini)cpemeB586
MELO3C023801Bottle gourd (USVL1VR-Ls)lsimeB368
MELO3C023801Cucumber (Gy14) v2cgybmeB212
MELO3C023801Silver-seed gourdcarmeB0485
MELO3C023801Silver-seed gourdcarmeB0757
MELO3C023801Cucumber (Chinese Long) v3cucmeB249
MELO3C023801Watermelon (97103) v2mewmbB434
MELO3C023801Wax gourdmewgoB542
MELO3C023801Cucumber (Gy14) v1cgymeB003
MELO3C023801Cucurbita maxima (Rimu)cmameB243
MELO3C023801Cucurbita maxima (Rimu)cmameB431
MELO3C023801Cucurbita moschata (Rifu)cmomeB231
MELO3C023801Cucurbita moschata (Rifu)cmomeB421
MELO3C023801Wild cucumber (PI 183967)cpimeB243
MELO3C023801Cucumber (Chinese Long) v2cumeB161
MELO3C023801Watermelon (Charleston Gray)mewcgB427
MELO3C023801Watermelon (97103) v1mewmB461
MELO3C023801Watermelon (97103) v1mewmB463