MELO3C023736 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C023736
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionRNA polymerase II large subunit
Locationchr6 : 18323671 .. 18324136 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GTAACCCATACACTCATTTTAGAGGATCAAGAGAGATAATCAAAAGTCGTTTACAGAAAAAGTAAAAGGAACAATGGAGTCTTCAAGCTCAAGTCTTCAAAAGATCAACAAAAATGATAGCAATGCCAAAGCTCCTCGTCTACGGCTGACTATGAATGCCGGTGATGGCGCTCACATTAACCCTCGTCATTCACGACCACCTCGAAGAACCCGCGGCAGTAAAATCAACCGTGCTCCTCCCCCAAAGAAGAGCACCGGCGGCGGCGGCCAGACAAACTAAGATCAAAGTTGGGATTTTTCCCTTTTCGGTTTTTTTTTTTTTTTAATTTTTTTTCCAGTATCTTTTTATGTAATTGACGACCCCATCACTCATCTGAAAAGAGATAACACGTAGCGGTGGTGGGAAGTTGGAACAACCAACAAGATTACATTTCATAAGATAACATGGCTGACTATTACTCTCCCG

mRNA sequence

GTAACCCATACACTCATTTTAGAGGATCAAGAGAGATAATCAAAAGTCGTTTACAGAAAAAGTAAAAGGAACAATGGAGTCTTCAAGCTCAAGTCTTCAAAAGATCAACAAAAATGATAGCAATGCCAAAGCTCCTCGTCTACGGCTGACTATGAATGCCGGTGATGGCGCTCACATTAACCCTCGTCATTCACGACCACCTCGAAGAACCCGCGGCAGTAAAATCAACCGTGCTCCTCCCCCAAAGAAGAGCACCGGCGGCGGCGGCCAGACAAACTAAGATCAAAGTTGGGATTTTTCCCTTTTCGGTTTTTTTTTTTTTTTAATTTTTTTTCCAGTATCTTTTTATGTAATTGACGACCCCATCACTCATCTGAAAAGAGATAACACGTAGCGGTGGTGGGAAGTTGGAACAACCAACAAGATTACATTTCATAAGATAACATGGCTGACTATTACTCTCCCG

Coding sequence (CDS)

ATGGAGTCTTCAAGCTCAAGTCTTCAAAAGATCAACAAAAATGATAGCAATGCCAAAGCTCCTCGTCTACGGCTGACTATGAATGCCGGTGATGGCGCTCACATTAACCCTCGTCATTCACGACCACCTCGAAGAACCCGCGGCAGTAAAATCAACCGTGCTCCTCCCCCAAAGAAGAGCACCGGCGGCGGCGGCCAGACAAACTAA

Protein sequence

MESSSSSLQKINKNDSNAKAPRLRLTMNAGDGAHINPRHSRPPRRTRGSKINRAPPPKKSTGGGGQTN*
Homology
[Close]
BLAST of MELO3C023736 vs. TrEMBL
Match: A0A0A0KAN3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G020130 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 4.4e-20
Identity = 53/68 (77.94%), Postives = 57/68 (83.82%), Query Frame = 1 

Query: 1  MESSSSSLQKINKNDSNAKAPRLRLTMNAGDGAHINPRHSRPPRRTRGSKINRAPPPKKS 60
          MESSSSSL+K   N+ NAKAPRLRL+MNAGDG  IN RHSRP +R R SK NRAPPPKKS
Sbjct: 1  MESSSSSLRK--NNNDNAKAPRLRLSMNAGDGTQINRRHSRPLQRNRNSKTNRAPPPKKS 60

Query: 61 TGGGGQTN 69
          TGGGGQTN
Sbjct: 61 TGGGGQTN 66

[Close]
BLAST of MELO3C023736 vs. TrEMBL
Match: A0A0A0L7D2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G258100 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 7.3e-15
Identity = 51/69 (73.91%), Postives = 53/69 (76.81%), Query Frame = 1 

Query: 1  MESSSSSLQKINKNDSNAKAPRLR-LTMNAGDGAHINPRHSRPPRRTRGSKINRAPPPKK 60
          MESSSS LQK NK+  NAKAPRLR LT+NA        RHSRPPRR R SKIN APPPKK
Sbjct: 1  MESSSSCLQKNNKD--NAKAPRLRRLTVNAR-------RHSRPPRRARNSKINPAPPPKK 60

Query: 61 STGGGGQTN 69
          STGGGGQTN
Sbjct: 61 STGGGGQTN 60

[Close]
BLAST of MELO3C023736 vs. NCBI nr
Match: gi|700190695|gb|KGN45899.1| (hypothetical protein Csa_6G020130 [Cucumis sativus])

HSP 1 Score: 104.8 bits (260), Expect = 6.3e-20
Identity = 53/68 (77.94%), Postives = 57/68 (83.82%), Query Frame = 1 

Query: 1  MESSSSSLQKINKNDSNAKAPRLRLTMNAGDGAHINPRHSRPPRRTRGSKINRAPPPKKS 60
          MESSSSSL+K   N+ NAKAPRLRL+MNAGDG  IN RHSRP +R R SK NRAPPPKKS
Sbjct: 1  MESSSSSLRK--NNNDNAKAPRLRLSMNAGDGTQINRRHSRPLQRNRNSKTNRAPPPKKS 60

Query: 61 TGGGGQTN 69
          TGGGGQTN
Sbjct: 61 TGGGGQTN 66

[Close]
BLAST of MELO3C023736 vs. NCBI nr
Match: gi|700202575|gb|KGN57708.1| (hypothetical protein Csa_3G258100 [Cucumis sativus])

HSP 1 Score: 87.4 bits (215), Expect = 1.0e-14
Identity = 51/69 (73.91%), Postives = 53/69 (76.81%), Query Frame = 1 

Query: 1  MESSSSSLQKINKNDSNAKAPRLR-LTMNAGDGAHINPRHSRPPRRTRGSKINRAPPPKK 60
          MESSSS LQK NK+  NAKAPRLR LT+NA        RHSRPPRR R SKIN APPPKK
Sbjct: 1  MESSSSCLQKNNKD--NAKAPRLRRLTVNAR-------RHSRPPRRARNSKINPAPPPKK 60

Query: 61 STGGGGQTN 69
          STGGGGQTN
Sbjct: 61 STGGGGQTN 60

The following BLAST results are available for this feature:
BLAST of MELO3C023736 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KAN3_CUCSA4.4e-2077.94Uncharacterized protein OS=Cucumis sativus GN=Csa_6G020130 PE=4 SV=1[more]
A0A0A0L7D2_CUCSA7.3e-1573.91Uncharacterized protein OS=Cucumis sativus GN=Csa_3G258100 PE=4 SV=1[more]
BLAST of MELO3C023736 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190695|gb|KGN45899.1|6.3e-2077.94hypothetical protein Csa_6G020130 [Cucumis sativus][more]
gi|700202575|gb|KGN57708.1|1.0e-1473.91hypothetical protein Csa_3G258100 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C023736T1MELO3C023736T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C023736Cucumber (Chinese Long) v3cucmeB249
MELO3C023736Watermelon (97103) v2mewmbB434
MELO3C023736Watermelon (97103) v2mewmbB443
MELO3C023736Wax gourdmewgoB535
MELO3C023736Cucumber (Gy14) v1cgymeB003
MELO3C023736Cucurbita maxima (Rimu)cmameB243
MELO3C023736Cucurbita maxima (Rimu)cmameB431
MELO3C023736Cucurbita moschata (Rifu)cmomeB231
MELO3C023736Cucurbita moschata (Rifu)cmomeB421
MELO3C023736Wild cucumber (PI 183967)cpimeB243
MELO3C023736Cucumber (Chinese Long) v2cumeB161
MELO3C023736Watermelon (Charleston Gray)mewcgB427
MELO3C023736Watermelon (Charleston Gray)mewcgB436
MELO3C023736Watermelon (97103) v1mewmB463
MELO3C023736Watermelon (97103) v1mewmB473
MELO3C023736Cucurbita pepo (Zucchini)cpemeB529
MELO3C023736Cucurbita pepo (Zucchini)cpemeB586
MELO3C023736Bottle gourd (USVL1VR-Ls)lsimeB368
MELO3C023736Cucumber (Gy14) v2cgybmeB212
MELO3C023736Silver-seed gourdcarmeB0485
MELO3C023736Silver-seed gourdcarmeB0757