MELO3C023670 (gene) Melon (DHL92) v3.5.1

NameMELO3C023670
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionRibonuclease PH
Locationchr1 : 7093929 .. 7094231 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGCTATGTATTTGGGAAAGATCGGAGACGATGTGGGGTCGAATGTGTCGAAGGGTACAATGGATTTCCCACTAACGATGGAAATGATATGGAGATCCCTATGATGTATAGTTGGGGACTAAACATGTCGCCTGACGACACCATGGGGACACATGGTCGCTCAAGTGAGGGTAGGAATGGTTCAATCGGGTCCAGGAGGAAGCAGGGAGGCCAAACGGTAGAAACTGTGAAAATCATTTGCAATGCAATGGAATATGCAAATGACCAGTTGAAGGACATTGCAGAATGGCCGAATTTATAA

mRNA sequence

ATGTGCTATGTATTTGGGAAAGATCGGAGACGATGTGGGGTCGAATGTGTCGAAGGGTACAATGGATTTCCCACTAACGATGGAAATGATATGGAGATCCCTATGATGTATAGTTGGGGACTAAACATGTCGCCTGACGACACCATGGGGACACATGGTCGCTCAAGTGAGGGTAGGAATGGTTCAATCGGGTCCAGGAGGAAGCAGGGAGGCCAAACGGTAGAAACTGTGAAAATCATTTGCAATGCAATGGAATATGCAAATGACCAGTTGAAGGACATTGCAGAATGGCCGAATTTATAA

Coding sequence (CDS)

ATGTGCTATGTATTTGGGAAAGATCGGAGACGATGTGGGGTCGAATGTGTCGAAGGGTACAATGGATTTCCCACTAACGATGGAAATGATATGGAGATCCCTATGATGTATAGTTGGGGACTAAACATGTCGCCTGACGACACCATGGGGACACATGGTCGCTCAAGTGAGGGTAGGAATGGTTCAATCGGGTCCAGGAGGAAGCAGGGAGGCCAAACGGTAGAAACTGTGAAAATCATTTGCAATGCAATGGAATATGCAAATGACCAGTTGAAGGACATTGCAGAATGGCCGAATTTATAA

Protein sequence

MCYVFGKDRRRCGVECVEGYNGFPTNDGNDMEIPMMYSWGLNMSPDDTMGTHGRSSEGRNGSIGSRRKQGGQTVETVKIICNAMEYANDQLKDIAEWPNL*
BLAST of MELO3C023670 vs. TrEMBL
Match: A0A0A0L3I2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G000030 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.3e-12
Identity = 38/79 (48.10%), Postives = 52/79 (65.82%), Query Frame = 1

Query: 11  RCGVECVEGYNGFPTNDGNDMEIPMMYSWGLNMSPDDTMGTHGRSSEGRNGSIGSRRKQG 70
           R G   + GY GF ++DGNDME P MYS  L++SPD+ M T  R+ + RN S  S+RK  
Sbjct: 39  RVGSNVLGGYEGFASDDGNDMEFPTMYSQRLDISPDEIMETRSRAGDRRNASSKSKRKWR 98

Query: 71  GQTVETVKIICNAMEYAND 90
           GQ++ET  I+ N +EY N+
Sbjct: 99  GQSIETAHILRNVIEYDNE 117

BLAST of MELO3C023670 vs. TrEMBL
Match: E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.2e-12
Identity = 49/110 (44.55%), Postives = 60/110 (54.55%), Query Frame = 1

Query: 1   MCYVFGKDRRR---------CGVECVEGYNGFPTNDGNDMEIPMMYSWGLNMSPDDTMGT 60
           + YVFGKDR            G     GY+    +   D + P MYS GLNMSPDD M T
Sbjct: 484 LSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDTDFPPMYSPGLNMSPDDLMET 543

Query: 61  H-GRSSEGRNGSIGSRRKQGGQTVETVKIICNAMEYANDQLKDIAEWPNL 101
              R SE RN S GS+RK+ G   ++  I+  A+EY N+QL  IAEWP L
Sbjct: 544 RTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPIL 593

BLAST of MELO3C023670 vs. TrEMBL
Match: A0A0A0M036_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G654880 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 8.4e-12
Identity = 39/73 (53.42%), Postives = 54/73 (73.97%), Query Frame = 1

Query: 21  NGFPTNDGNDMEIPMMYSWGLNMSPDDTMGTH-GRSSEGRNGSIGSRRKQGGQTVETVKI 80
           +G P  D +D  I MMYS G++MS D+ +GT  G++SEGRN S G++RKQGGQ  E +++
Sbjct: 49  DGVPFGDSHDPNILMMYSQGMDMSSDEMLGTCVGQTSEGRNTSNGNKRKQGGQYYEMMEV 108

Query: 81  ICNAMEYANDQLK 93
           + NAME+AND LK
Sbjct: 109 LRNAMEFANDPLK 121

BLAST of MELO3C023670 vs. TrEMBL
Match: A0A0A0KFW0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G116150 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.2e-10
Identity = 38/62 (61.29%), Postives = 44/62 (70.97%), Query Frame = 1

Query: 36 MYSWGLNMSPDDTMGTHGRSSEGRNGSIGSRRKQGGQTVETVKIICNAMEYANDQLKDIA 95
          MYS GL+M PD+ +GT  +SSEGRN S GS+RK GGQ  E V +I N ME  NDQLK IA
Sbjct: 1  MYSQGLDMPPDEMLGTR-QSSEGRNCSSGSKRKHGGQHYEAVDVISNEMEVRNDQLKAIA 60

Query: 96 EW 98
           W
Sbjct: 61 NW 61

BLAST of MELO3C023670 vs. TrEMBL
Match: E5GBS5_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 4.6e-10
Identity = 42/86 (48.84%), Postives = 55/86 (63.95%), Query Frame = 1

Query: 21  NGFPTNDGND---MEIPMMYSW--GLNMSPDDTMGTH-GRSSEGRNGSIGSRRKQGGQTV 80
           +GF  ND  +   +E  +  +W  GLNMSPD+ M +  GRS +GRN S  S+RK+ G+ +
Sbjct: 89  SGFSWNDELNYIIVEKDVFDNWMKGLNMSPDEFMDSRLGRSGDGRNASSRSKRKRCGRLI 148

Query: 81  ETVKIICNAMEYANDQLKDIAEWPNL 101
           E   II NAMEYANDQL  I +WP L
Sbjct: 149 EIANIIQNAMEYANDQLNRIVDWPIL 174

BLAST of MELO3C023670 vs. NCBI nr
Match: gi|778708415|ref|XP_004148199.2| (PREDICTED: RING-H2 finger protein ATL66 [Cucumis sativus])

HSP 1 Score: 106.3 bits (264), Expect = 3.2e-20
Identity = 55/89 (61.80%), Postives = 64/89 (71.91%), Query Frame = 1

Query: 13  GVECVEGYNGFPTNDGNDMEIPMMYSWGLNMSPDDTMGTH-GRSSEGRNGSIGSRRKQGG 72
           G    + Y GFPT DGN+MEIP MY  GLNMSP+D M T   RSSE R GS  S+RK+ G
Sbjct: 183 GSNVSDEYKGFPTEDGNNMEIPTMYCQGLNMSPEDIMDTRPSRSSECRTGSSRSKRKRRG 242

Query: 73  QTVETVKIICNAMEYANDQLKDIAEWPNL 101
           Q VET+++ C+AMEYANDQLK IAE  NL
Sbjct: 243 QDVETMEVTCSAMEYANDQLKAIAECQNL 271

BLAST of MELO3C023670 vs. NCBI nr
Match: gi|659082641|ref|XP_008441954.1| (PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo])

HSP 1 Score: 83.6 bits (205), Expect = 2.2e-13
Identity = 47/109 (43.12%), Postives = 65/109 (59.63%), Query Frame = 1

Query: 1   MCYVFGKDRR---------RCGVECVEGYNG-FPTNDGNDMEIPMMYSWGLNMSPDDTMG 60
           + YVFGKDR            G      +N   P  D +D +IP MYS G++MSPD+  G
Sbjct: 132 LSYVFGKDRATGARSETFPNVGSNVSNMFNDTIPLGDSHDEDIPTMYSQGVHMSPDEMFG 191

Query: 61  TH-GRSSEGRNGSIGSRRKQGGQTVETVKIICNAMEYANDQLKDIAEWP 99
              G++SE RN S  S+RK+G +  ETV++I + ME+ N+QLK IA+WP
Sbjct: 192 IRAGQASERRNCSSVSKRKRGSERYETVEVIRSVMEFGNEQLKAIADWP 240

BLAST of MELO3C023670 vs. NCBI nr
Match: gi|659123900|ref|XP_008461893.1| (PREDICTED: uncharacterized protein LOC103500387 [Cucumis melo])

HSP 1 Score: 83.6 bits (205), Expect = 2.2e-13
Identity = 47/107 (43.93%), Postives = 61/107 (57.01%), Query Frame = 1

Query: 1   MCYVFGKDRRR---------CGVECVEGYNGFPTNDGNDMEIPMMYSWGLNMSPDDTMGT 60
           + YVF KD             G     GY+ F  N  +D +   MYS GLNMSPD+ MGT
Sbjct: 78  LSYVFSKDHATGGRAESFADVGSNDPTGYDAFAANAASDTDFQPMYSRGLNMSPDELMGT 137

Query: 61  H-GRSSEGRNGSIGSRRKQGGQTVETVKIICNAMEYANDQLKDIAEW 98
              R SEGR  S GS++K+GG T+++  I+  A+EY N+QL  IAEW
Sbjct: 138 RTARVSEGRYVSSGSKQKRGGSTIDSGDILRTAIEYGNEQLNRIAEW 184

BLAST of MELO3C023670 vs. NCBI nr
Match: gi|659126986|ref|XP_008463462.1| (PREDICTED: uncharacterized protein LOC103501629 [Cucumis melo])

HSP 1 Score: 83.2 bits (204), Expect = 2.9e-13
Identity = 49/110 (44.55%), Postives = 60/110 (54.55%), Query Frame = 1

Query: 1   MCYVFGKDRRR---------CGVECVEGYNGFPTNDGNDMEIPMMYSWGLNMSPDDTMGT 60
           + YVFGKDR            G     GY+ FP +   D + P MYS GLNMS DD M T
Sbjct: 470 LSYVFGKDRATGGRAESFADIGSNHPAGYDAFPADAAPDTDFPPMYSLGLNMSADDLMET 529

Query: 61  H-GRSSEGRNGSIGSRRKQGGQTVETVKIICNAMEYANDQLKDIAEWPNL 101
              R SE RN S GS+RK  G   ++  I+  A++Y N+QL  IAEWP L
Sbjct: 530 RTARVSERRNVSSGSKRKHPGHATDSGDIVRTAIKYGNEQLHRIAEWPIL 579

BLAST of MELO3C023670 vs. NCBI nr
Match: gi|700200446|gb|KGN55579.1| (hypothetical protein Csa_3G000030 [Cucumis sativus])

HSP 1 Score: 80.5 bits (197), Expect = 1.9e-12
Identity = 38/79 (48.10%), Postives = 52/79 (65.82%), Query Frame = 1

Query: 11  RCGVECVEGYNGFPTNDGNDMEIPMMYSWGLNMSPDDTMGTHGRSSEGRNGSIGSRRKQG 70
           R G   + GY GF ++DGNDME P MYS  L++SPD+ M T  R+ + RN S  S+RK  
Sbjct: 39  RVGSNVLGGYEGFASDDGNDMEFPTMYSQRLDISPDEIMETRSRAGDRRNASSKSKRKWR 98

Query: 71  GQTVETVKIICNAMEYAND 90
           GQ++ET  I+ N +EY N+
Sbjct: 99  GQSIETAHILRNVIEYDNE 117

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0L3I2_CUCSA1.3e-1248.10Uncharacterized protein OS=Cucumis sativus GN=Csa_3G000030 PE=4 SV=1[more]
E5GCB5_CUCME2.2e-1244.55Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A0A0A0M036_CUCSA8.4e-1253.42Uncharacterized protein OS=Cucumis sativus GN=Csa_1G654880 PE=4 SV=1[more]
A0A0A0KFW0_CUCSA1.2e-1061.29Uncharacterized protein OS=Cucumis sativus GN=Csa_6G116150 PE=4 SV=1[more]
E5GBS5_CUCME4.6e-1048.84Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|778708415|ref|XP_004148199.2|3.2e-2061.80PREDICTED: RING-H2 finger protein ATL66 [Cucumis sativus][more]
gi|659082641|ref|XP_008441954.1|2.2e-1343.12PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo][more]
gi|659123900|ref|XP_008461893.1|2.2e-1343.93PREDICTED: uncharacterized protein LOC103500387 [Cucumis melo][more]
gi|659126986|ref|XP_008463462.1|2.9e-1344.55PREDICTED: uncharacterized protein LOC103501629 [Cucumis melo][more]
gi|700200446|gb|KGN55579.1|1.9e-1248.10hypothetical protein Csa_3G000030 [Cucumis sativus][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C023670T1MELO3C023670T1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None