MELO3C023637 (gene) Melon (DHL92) v3.5.1

NameMELO3C023637
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionRetrotransposon protein, putative, unclassified
Locationchr1 : 7794278 .. 7794829 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATTGTAGAAAGATTGCAGCGCATATTGGAAATGATAAATTGTTGATCCATTGCTTCCAGGATAGCTTGACTCGTTCAGCTAGTCGATGGTATATTCAATTAGATAATGGACACATTCATGTTTGGAAGGACATAGATGATGCATTTCTAAAGCAATACAAACACAACATTGATATGACTCCAGACCGTTTAGACTTGCAACAGATGGAGAAGAAGAGTTTAGAAAGCTTCAAAGGATATGCTCAACGTTGGAGAGATATGGCCGCCAAGGTTCAACCACTGTTAATAAACAAAGAAATGACATCTATGTTTATGAATACTTTGCAGGCTTCATTCTATGATCGAATGATTGGTAATGCAATAACCAATTTTTTTGACATTATTGTTATTGGTGAAAGAATTGAATATGGGATAAAGCATGAGAGGTTAGCAGAGGCTACAACTGAATATGGTGGAATAAAGAAAGAAACAATATCTAAGAAGAAAGAAGGAGAGGTTCATACAATTAGTTTTCCTAATTCAAGGAAGCACAAATTAATTTTCGGCTAG

mRNA sequence

ATGTATTGTAGAAAGATTGCAGCGCATATTGGAAATGATAAATTGTTGATCCATTGCTTCCAGGATAGCTTGACTCGTTCAGCTAGTCGATGGTATATTCAATTAGATAATGGACACATTCATGTTTGGAAGGACATAGATGATGCATTTCTAAAGCAATACAAACACAACATTGATATGACTCCAGACCGTTTAGACTTGCAACAGATGGAGAAGAAGAGTTTAGAAAGCTTCAAAGGATATGCTCAACGTTGGAGAGATATGGCCGCCAAGGTTCAACCACTGTTAATAAACAAAGAAATGACATCTATGTTTATGAATACTTTGCAGGCTTCATTCTATGATCGAATGATTGGTAATGCAATAACCAATTTTTTTGACATTATTGTTATTGGTGAAAGAATTGAATATGGGATAAAGCATGAGAGGTTAGCAGAGGCTACAACTGAATATGGTGGAATAAAGAAAGAAACAATATCTAAGAAGAAAGAAGGAGAGGTTCATACAATTAGTTTTCCTAATTCAAGGAAGCACAAATTAATTTTCGGCTAG

Coding sequence (CDS)

ATGTATTGTAGAAAGATTGCAGCGCATATTGGAAATGATAAATTGTTGATCCATTGCTTCCAGGATAGCTTGACTCGTTCAGCTAGTCGATGGTATATTCAATTAGATAATGGACACATTCATGTTTGGAAGGACATAGATGATGCATTTCTAAAGCAATACAAACACAACATTGATATGACTCCAGACCGTTTAGACTTGCAACAGATGGAGAAGAAGAGTTTAGAAAGCTTCAAAGGATATGCTCAACGTTGGAGAGATATGGCCGCCAAGGTTCAACCACTGTTAATAAACAAAGAAATGACATCTATGTTTATGAATACTTTGCAGGCTTCATTCTATGATCGAATGATTGGTAATGCAATAACCAATTTTTTTGACATTATTGTTATTGGTGAAAGAATTGAATATGGGATAAAGCATGAGAGGTTAGCAGAGGCTACAACTGAATATGGTGGAATAAAGAAAGAAACAATATCTAAGAAGAAAGAAGGAGAGGTTCATACAATTAGTTTTCCTAATTCAAGGAAGCACAAATTAATTTTCGGCTAG

Protein sequence

MYCRKIAAHIGNDKLLIHCFQDSLTRSASRWYIQLDNGHIHVWKDIDDAFLKQYKHNIDMTPDRLDLQQMEKKSLESFKGYAQRWRDMAAKVQPLLINKEMTSMFMNTLQASFYDRMIGNAITNFFDIIVIGERIEYGIKHERLAEATTEYGGIKKETISKKKEGEVHTISFPNSRKHKLIFG*
BLAST of MELO3C023637 vs. TrEMBL
Match: A0A151QU09_CAJCA (Uncharacterized protein (Fragment) OS=Cajanus cajan GN=KK1_045359 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 2.4e-49
Identity = 91/172 (52.91%), Postives = 128/172 (74.42%), Query Frame = 1

Query: 1   MYCRKIAAHIGNDKLLIHCFQDSLTRSASRWYIQLDNGHIHVWKDIDDAFLKQYKHNIDM 60
           MYCRK+AA++GN+KLLIHCFQ+SL+ +   WY+QLD G I  WK + DAFL++YK+NID+
Sbjct: 34  MYCRKMAAYVGNEKLLIHCFQESLSEATLNWYMQLDGGKIQTWKQLADAFLRRYKYNIDL 93

Query: 61  TPDRLDLQQMEKKSLESFKGYAQRWRDMAAKVQPLLINKEMTSMFMNTLQASFYDRMIGN 120
            PDR DLQ + K+  ESFK YAQRWR++AA+++P L +KEM +MF+N+L   +YD+MIGN
Sbjct: 94  IPDRSDLQSLSKRGDESFKTYAQRWRELAAQIEPSLSDKEMVTMFINSLSGPYYDKMIGN 153

Query: 121 AITNFFDIIVIGERIEYGIKHERLAEATTEYGGIKKETISKKKEGEVHTISF 173
             T F DI+ IGER+E G+K  ++ +A T Y    ++   KK+E  VH ++F
Sbjct: 154 TSTLFADIVTIGERVEQGLKSGKIGKAPTSYD--PRKIYEKKREEGVHAVTF 203

BLAST of MELO3C023637 vs. TrEMBL
Match: A0A061F1Q4_THECC (Gag-pro-like protein OS=Theobroma cacao GN=TCM_026480 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 3.0e-47
Identity = 98/178 (55.06%), Postives = 125/178 (70.22%), Query Frame = 1

Query: 1   MYCRKIAAHIGNDKLLIHCFQDSLTRSASRWYIQLDNGHIHVWKDIDDAFLKQYKHNIDM 60
           MYCRK+AA   +DKLLIH FQDSLT SA+RWY+QLD   I  WKD+  AF+ QYKH  ++
Sbjct: 38  MYCRKMAAQSHDDKLLIHFFQDSLTGSAARWYVQLDRNRIKTWKDLARAFIAQYKHVAEL 97

Query: 61  TPDRLDLQQMEKKSLESFKGYAQRWRDMAAKVQPLLINKEMTSMFMNTLQASFYDRMIGN 120
            PDRL LQ MEKK  E+FK YAQRWRD AA+VQP L +KEMT +F+NTL+A FY+R+IGN
Sbjct: 98  APDRLSLQTMEKKQSENFKEYAQRWRDTAAQVQPPLTDKEMTVLFINTLRAPFYERLIGN 157

Query: 121 AITNFFDIIVIGERIEYGIKHERLAEATTEYGGIKKETISKKKEGEVHTISFPNSRKH 179
           A  NF D+++ GE IE  IK  ++     E    KK +  KKKEG+V  ++  + + H
Sbjct: 158 ATKNFADLVLSGEIIEGAIKSGKI--EGHEVASSKKGSTPKKKEGDVQAVAHDSQQAH 213

BLAST of MELO3C023637 vs. TrEMBL
Match: A0A061E6J4_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_010507 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 1.1e-46
Identity = 92/171 (53.80%), Postives = 123/171 (71.93%), Query Frame = 1

Query: 1   MYCRKIAAHIGNDKLLIHCFQDSLTRSASRWYIQLDNGHIHVWKDIDDAFLKQYKHNIDM 60
           MYCR++AA+  +DKLLIHCFQDSLT +A++WY+QLD   IH WKD+  AF+ QYKH  DM
Sbjct: 188 MYCRRMAAYAHDDKLLIHCFQDSLTGAAAKWYVQLDRNRIHTWKDLARAFVAQYKHVTDM 247

Query: 61  TPDRLDLQQMEKKSLESFKGYAQRWRDMAAKVQPLLINKEMTSMFMNTLQASFYDRMIGN 120
            PDRL LQ MEKK+ ESFK YAQRWR++A++VQP L  KE T MF+NTL+A +Y+R++G+
Sbjct: 248 APDRLSLQNMEKKTTESFKEYAQRWRNVASQVQPPLTEKETTVMFVNTLRAPYYERLVGS 307

Query: 121 AITNFFDIIVIGERIEYGIKHERLAEATTEYGGIKKETISKKKEGEVHTIS 172
           A  NF D+++ GE IE  IK  ++     +    +K    K+KEGE   I+
Sbjct: 308 ATKNFADMVISGEMIETAIKQGKIEGG--DMANTRKGGTFKRKEGEAQVIT 356

BLAST of MELO3C023637 vs. TrEMBL
Match: A0A061FWG6_THECC (Gag-pro-like protein OS=Theobroma cacao GN=TCM_014033 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 2.5e-46
Identity = 92/171 (53.80%), Postives = 122/171 (71.35%), Query Frame = 1

Query: 1   MYCRKIAAHIGNDKLLIHCFQDSLTRSASRWYIQLDNGHIHVWKDIDDAFLKQYKHNIDM 60
           MYCR++ A+  +DKLLIHCFQDSLT +A++WY+QLD   IH WKD+  AF+ QYKH IDM
Sbjct: 1   MYCRRMTAYAHDDKLLIHCFQDSLTDAAAKWYVQLDRNRIHKWKDLARAFVAQYKHVIDM 60

Query: 61  TPDRLDLQQMEKKSLESFKGYAQRWRDMAAKVQPLLINKEMTSMFMNTLQASFYDRMIGN 120
            PDRL LQ MEKK+ ESFK Y QRWR++A++VQP L  KE   MF+NTL+A +Y+R++G+
Sbjct: 61  APDRLSLQNMEKKTTESFKEYVQRWRNVASQVQPPLTEKETIVMFVNTLRAPYYERLVGS 120

Query: 121 AITNFFDIIVIGERIEYGIKHERLAEATTEYGGIKKETISKKKEGEVHTIS 172
           AI NF D+++ GE IE  IK  ++    T     +K    K+KEGE   I+
Sbjct: 121 AIKNFADMVISGEMIETAIKQGKIEGGDTR--NTRKGGTFKRKEGEAQAIT 169

BLAST of MELO3C023637 vs. TrEMBL
Match: A0A061EAJ4_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_007907 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 3.3e-46
Identity = 97/178 (54.49%), Postives = 125/178 (70.22%), Query Frame = 1

Query: 1   MYCRKIAAHIGNDKLLIHCFQDSLTRSASRWYIQLDNGHIHVWKDIDDAFLKQYKHNIDM 60
           MYCRK+AA   +DKLLIH FQDSLT SA+RWY+QLD   I  WKD+  AF+ QYKH  ++
Sbjct: 38  MYCRKMAAQSHDDKLLIHFFQDSLTGSAARWYVQLDRNRIKTWKDLARAFIAQYKHVDEL 97

Query: 61  TPDRLDLQQMEKKSLESFKGYAQRWRDMAAKVQPLLINKEMTSMFMNTLQASFYDRMIGN 120
            PDRL LQ MEKK  E+FK YAQRWRD AA+VQP L +KEMT +F+NTL+A FY+R+IGN
Sbjct: 98  APDRLSLQTMEKKQSENFKEYAQRWRDTAAQVQPPLTDKEMTVLFINTLRALFYERLIGN 157

Query: 121 AITNFFDIIVIGERIEYGIKHERLAEATTEYGGIKKETISKKKEGEVHTISFPNSRKH 179
           A  NF D+++ GE IE  IK E++     E    KK +  KKKE ++  ++  + + H
Sbjct: 158 ATKNFTDLVLSGEIIEGAIKSEKI--EGHEIASSKKGSTPKKKERDMQPVAHNSQQAH 213

BLAST of MELO3C023637 vs. NCBI nr
Match: gi|659123167|ref|XP_008461527.1| (PREDICTED: uncharacterized protein LOC103500098 [Cucumis melo])

HSP 1 Score: 377.1 bits (967), Expect = 1.8e-101
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 1

Query: 1   MYCRKIAAHIGNDKLLIHCFQDSLTRSASRWYIQLDNGHIHVWKDIDDAFLKQYKHNIDM 60
           MYCRKIAAHIGNDKLLIHCFQDSLTRSASRWYIQLDNGHIHVWKDIDDAFLKQYKHNIDM
Sbjct: 1   MYCRKIAAHIGNDKLLIHCFQDSLTRSASRWYIQLDNGHIHVWKDIDDAFLKQYKHNIDM 60

Query: 61  TPDRLDLQQMEKKSLESFKGYAQRWRDMAAKVQPLLINKEMTSMFMNTLQASFYDRMIGN 120
           TPDRLDLQQMEKKSLESFKGYAQRWRDMAAKVQPLLINKEMTSMFMNTLQASFYDRMIGN
Sbjct: 61  TPDRLDLQQMEKKSLESFKGYAQRWRDMAAKVQPLLINKEMTSMFMNTLQASFYDRMIGN 120

Query: 121 AITNFFDIIVIGERIEYGIKHERLAEATTEYGGIKKETISKKKEGEVHTISFPNSRKHKL 180
           AITNFFDIIVIGERIEYGIKHERLAEATTEYGGIKKETISKKKEGEVHTISFPNSRKHKL
Sbjct: 121 AITNFFDIIVIGERIEYGIKHERLAEATTEYGGIKKETISKKKEGEVHTISFPNSRKHKL 180

Query: 181 IFG 184
           IFG
Sbjct: 181 IFG 183

BLAST of MELO3C023637 vs. NCBI nr
Match: gi|659131252|ref|XP_008465589.1| (PREDICTED: uncharacterized protein LOC103503225 [Cucumis melo])

HSP 1 Score: 312.4 bits (799), Expect = 5.3e-82
Identity = 150/183 (81.97%), Postives = 162/183 (88.52%), Query Frame = 1

Query: 1   MYCRKIAAHIGNDKLLIHCFQDSLTRSASRWYIQLDNGHIHVWKDIDDAFLKQYKHNIDM 60
           MYCRK+AAHI NDKLL+HCFQDSLT  ASRWYIQLDN HIH+WKD+ DAFLKQYKHNIDM
Sbjct: 171 MYCRKMAAHINNDKLLVHCFQDSLTGPASRWYIQLDNAHIHIWKDLADAFLKQYKHNIDM 230

Query: 61  TPDRLDLQQMEKKSLESFKGYAQRWRDMAAKVQPLLINKEMTSMFMNTLQASFYDRMIGN 120
            P+RLDLQ+MEKKS ESFK YAQRW+DM  +VQP LI+KEMTSMFMNTL+A FY+RMIGN
Sbjct: 231 APNRLDLQRMEKKSSESFKEYAQRWKDMTVEVQPPLIDKEMTSMFMNTLRAPFYERMIGN 290

Query: 121 AITNFFDIIVIGERIEYGIKHERLAEATTEYGGIKKETISKKKEGEVHTISFPNSRKHKL 180
           A TNF +IIVIGERIEYGIKH RLAEA TEYGGIKK TISKKKEGEVH I FPNS KHK 
Sbjct: 291 ASTNFSNIIVIGERIEYGIKHGRLAEAKTEYGGIKKGTISKKKEGEVHAIGFPNSGKHKS 350

Query: 181 IFG 184
           IFG
Sbjct: 351 IFG 353

BLAST of MELO3C023637 vs. NCBI nr
Match: gi|659131240|ref|XP_008465582.1| (PREDICTED: uncharacterized protein LOC103503218 [Cucumis melo])

HSP 1 Score: 303.5 bits (776), Expect = 2.5e-79
Identity = 147/183 (80.33%), Postives = 159/183 (86.89%), Query Frame = 1

Query: 1   MYCRKIAAHIGNDKLLIHCFQDSLTRSASRWYIQLDNGHIHVWKDIDDAFLKQYKHNIDM 60
           MYCRK+AAHI  DKLL+HCFQDSLT   +RWYIQLDN HIHVWKD+ DAFLKQYKHNIDM
Sbjct: 126 MYCRKMAAHINIDKLLVHCFQDSLTGPTNRWYIQLDNAHIHVWKDLADAFLKQYKHNIDM 185

Query: 61  TPDRLDLQQMEKKSLESFKGYAQRWRDMAAKVQPLLINKEMTSMFMNTLQASFYDRMIGN 120
           TPD LDLQ+MEKKS +SFK YAQRWRD+  +VQP L +KEMT +FMNTL+A FY+RMIGN
Sbjct: 186 TPDHLDLQRMEKKSSKSFKEYAQRWRDIDVEVQPPLTDKEMTYVFMNTLRAPFYERMIGN 245

Query: 121 AITNFFDIIVIGERIEYGIKHERLAEATTEYGGIKKETISKKKEGEVHTISFPNSRKHKL 180
           A TNF DIIVIGERIEYGIKH RLAEATTEYGGIKK TISKKKEGEVH I FPNS KHK 
Sbjct: 246 ASTNFSDIIVIGERIEYGIKHGRLAEATTEYGGIKKGTISKKKEGEVHGIGFPNSGKHKS 305

Query: 181 IFG 184
           IFG
Sbjct: 306 IFG 308

BLAST of MELO3C023637 vs. NCBI nr
Match: gi|659127206|ref|XP_008463580.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103501689 [Cucumis melo])

HSP 1 Score: 302.8 bits (774), Expect = 4.2e-79
Identity = 146/183 (79.78%), Postives = 160/183 (87.43%), Query Frame = 1

Query: 1   MYCRKIAAHIGNDKLLIHCFQDSLTRSASRWYIQLDNGHIHVWKDIDDAFLKQYKHNIDM 60
           MYCRK+AA+  NDKLL+HCFQDSL   AS+WYIQLDN HIHVWKD+ D FLKQYKHNIDM
Sbjct: 223 MYCRKMAAYTNNDKLLVHCFQDSLIGPASQWYIQLDNAHIHVWKDLADVFLKQYKHNIDM 282

Query: 61  TPDRLDLQQMEKKSLESFKGYAQRWRDMAAKVQPLLINKEMTSMFMNTLQASFYDRMIGN 120
            PDRLDLQQMEKKS ESFK Y Q+WRDMAA+VQP LI+KEMTS+FMNTL+A FYDRM GN
Sbjct: 283 APDRLDLQQMEKKSSESFKEYTQQWRDMAAQVQPPLIDKEMTSIFMNTLRAPFYDRMSGN 342

Query: 121 AITNFFDIIVIGERIEYGIKHERLAEATTEYGGIKKETISKKKEGEVHTISFPNSRKHKL 180
           A TNF +IIVIGERIEYGIKHE+LAEATTEYGG +K TISKKKEGEVH I FPNS K+K 
Sbjct: 343 ASTNFSNIIVIGERIEYGIKHEKLAEATTEYGGKEKGTISKKKEGEVHAIGFPNSGKYKS 402

Query: 181 IFG 184
           IFG
Sbjct: 403 IFG 405

BLAST of MELO3C023637 vs. NCBI nr
Match: gi|659123179|ref|XP_008461534.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103500105 [Cucumis melo])

HSP 1 Score: 301.2 bits (770), Expect = 1.2e-78
Identity = 146/183 (79.78%), Postives = 157/183 (85.79%), Query Frame = 1

Query: 1   MYCRKIAAHIGNDKLLIHCFQDSLTRSASRWYIQLDNGHIHVWKDIDDAFLKQYKHNIDM 60
           MYCRK+ AHI NDKLL+HCFQDSLT  ASRWYIQLDN HIHVWKD+ DAFLKQYKHNIDM
Sbjct: 108 MYCRKMVAHINNDKLLVHCFQDSLTGPASRWYIQLDNAHIHVWKDLADAFLKQYKHNIDM 167

Query: 61  TPDRLDLQQMEKKSLESFKGYAQRWRDMAAKVQPLLINKEMTSMFMNTLQASFYDRMIGN 120
            PDRLDLQ+M+KKS +SFK YAQ  RD+A ++QP L  KEMTSMFMNTL+A FY+RMIGN
Sbjct: 168 APDRLDLQRMKKKSSKSFKEYAQXXRDIAVELQPPLTEKEMTSMFMNTLRAPFYERMIGN 227

Query: 121 AITNFFDIIVIGERIEYGIKHERLAEATTEYGGIKKETISKKKEGEVHTISFPNSRKHKL 180
           A TNF DIIVIGERIEYGIKH RL EATTEYGGIKK TISKKKEGEVH I FPN  KHK 
Sbjct: 228 ASTNFSDIIVIGERIEYGIKHGRLVEATTEYGGIKKGTISKKKEGEVHAIGFPNLGKHKS 287

Query: 181 IFG 184
           IFG
Sbjct: 288 IFG 290

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A151QU09_CAJCA2.4e-4952.91Uncharacterized protein (Fragment) OS=Cajanus cajan GN=KK1_045359 PE=4 SV=1[more]
A0A061F1Q4_THECC3.0e-4755.06Gag-pro-like protein OS=Theobroma cacao GN=TCM_026480 PE=4 SV=1[more]
A0A061E6J4_THECC1.1e-4653.80Uncharacterized protein OS=Theobroma cacao GN=TCM_010507 PE=4 SV=1[more]
A0A061FWG6_THECC2.5e-4653.80Gag-pro-like protein OS=Theobroma cacao GN=TCM_014033 PE=4 SV=1[more]
A0A061EAJ4_THECC3.3e-4654.49Uncharacterized protein OS=Theobroma cacao GN=TCM_007907 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|659123167|ref|XP_008461527.1|1.8e-101100.00PREDICTED: uncharacterized protein LOC103500098 [Cucumis melo][more]
gi|659131252|ref|XP_008465589.1|5.3e-8281.97PREDICTED: uncharacterized protein LOC103503225 [Cucumis melo][more]
gi|659131240|ref|XP_008465582.1|2.5e-7980.33PREDICTED: uncharacterized protein LOC103503218 [Cucumis melo][more]
gi|659127206|ref|XP_008463580.1|4.2e-7979.78PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103501689 [Cucumis me... [more]
gi|659123179|ref|XP_008461534.1|1.2e-7879.78PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103500105 [Cucumis me... [more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005162Retrotrans_gag_dom
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C023637T1MELO3C023637T1mRNA


Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005162Retrotransposon gag domainPFAMPF03732Retrotrans_gagcoord: 23..110
score: 4.

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None