MELO3C023297 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C023297
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Chloride channel protein
Location	chr11 : 1044622 .. 1044867 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTATGTGCGTCATCATGGTTGAAATTTCAAACAATTTGAAAATTTTACCTCTCATCATGCTTGTACTTCTGATGTCCAAGGTAAGTTAACAAATTGAAAATTGAAGTTTTAACCGTTCAACAAGTTTATTTCCACGTGAGAGTGGGTTATGTATATAATCACTTCAGGCTGTTGGTGATGCCTTTAATGAAGGCCTGTATGAAGAGCAAGCCCAATTGAAGGGTATTCCATTACTGGAATGA

mRNA sequence

ATGGGTATGTGCGTCATCATGGTTGAAATTTCAAACAATTTGAAAATTTTACCTCTCATCATGCTTGTACTTCTGATGTCCAAGGCTGTTGGTGATGCCTTTAATGAAGGCCTGTATGAAGAGCAAGCCCAATTGAAGGGTATTCCATTACTGGAATGA

Coding sequence (CDS)

ATGGGTATGTGCGTCATCATGGTTGAAATTTCAAACAATTTGAAAATTTTACCTCTCATCATGCTTGTACTTCTGATGTCCAAGGCTGTTGGTGATGCCTTTAATGAAGGCCTGTATGAAGAGCAAGCCCAATTGAAGGGTATTCCATTACTGGAATGA

Protein sequence

MGMCVIMVEISNNLKILPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE*

Homology

[Close]

BLAST of MELO3C023297 vs. Swiss-Prot
Match: CLCD_ARATH (Chloride channel protein CLC-d OS=Arabidopsis thaliana GN=CLC-D PE=1 SV=2)

HSP 1 Score: 90.1 bits (222), Expect = 7.8e-18
Identity = 44/52 (84.62%), Postives = 48/52 (92.31%), Query Frame = 1


Query: 1   MGMCVIMVEISNNLKILPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 53
           + +CVIMVEI+NNLK+LPLIMLVLL+SKAVGDAFNEGLYE QA+LKGIPLLE
Sbjct: 524 VSLCVIMVEITNNLKLLPLIMLVLLISKAVGDAFNEGLYEVQARLKGIPLLE 575

[Close]

BLAST of MELO3C023297 vs. Swiss-Prot
Match: CLCC_ARATH (Chloride channel protein CLC-c OS=Arabidopsis thaliana GN=CLC-C PE=1 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.6e-10
Identity = 27/52 (51.92%), Postives = 40/52 (76.92%), Query Frame = 1


Query: 1   MGMCVIMVEISNNLKILPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 53
           + +CVI++E++NNL +LPL+MLVLL+SK V D FN G+Y++   +KG+P +E
Sbjct: 536 VSLCVILLELTNNLLMLPLVMLVLLISKTVADCFNRGVYDQIVTMKGLPYME 587

[Close]

BLAST of MELO3C023297 vs. Swiss-Prot
Match: CLCB_ARATH (Chloride channel protein CLC-b OS=Arabidopsis thaliana GN=CLC-B PE=1 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 3.0e-09
Identity = 26/52 (50.00%), Postives = 38/52 (73.08%), Query Frame = 1


Query: 1   MGMCVIMVEISNNLKILPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 53
           + +CVI +E++NNL +LP+ M+VLL++K VGD+FN  +Y+    LKG+P LE
Sbjct: 525 VSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYDIILHLKGLPFLE 576

[Close]

BLAST of MELO3C023297 vs. Swiss-Prot
Match: CLCA_ARATH (Chloride channel protein CLC-a OS=Arabidopsis thaliana GN=CLC-A PE=1 SV=2)

HSP 1 Score: 61.2 bits (147), Expect = 3.9e-09
Identity = 27/52 (51.92%), Postives = 37/52 (71.15%), Query Frame = 1


Query: 1   MGMCVIMVEISNNLKILPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 53
           + +CVI +E++NNL +LP+ M VLL++K VGD+FN  +YE    LKG+P LE
Sbjct: 526 VSLCVIFLELTNNLLLLPITMFVLLIAKTVGDSFNLSIYEIILHLKGLPFLE 577

[Close]

BLAST of MELO3C023297 vs. Swiss-Prot
Match: CLCG_ARATH (Putative chloride channel-like protein CLC-g OS=Arabidopsis thaliana GN=CBSCLC6 PE=3 SV=2)

HSP 1 Score: 56.6 bits (135), Expect = 9.5e-08
Identity = 25/48 (52.08%), Postives = 34/48 (70.83%), Query Frame = 1


Query: 4   CVIMVEISNNLKILPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLL 52
           CVI++E++NNL +LP++M+VLL+SK V D FN  +Y    +LKG P L
Sbjct: 513 CVILLELTNNLLLLPMMMVVLLISKTVADGFNANIYNLIMKLKGFPYL 560

[Close]

BLAST of MELO3C023297 vs. TrEMBL
Match: A0A0A0KI42_CUCSA (Chloride channel protein OS=Cucumis sativus GN=Csa_6G425060 PE=3 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.2e-17
Identity = 48/52 (92.31%), Postives = 50/52 (96.15%), Query Frame = 1


Query: 1   MGMCVIMVEISNNLKILPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 53
           + +CVIMVEISNNLK LPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE
Sbjct: 522 VSLCVIMVEISNNLKFLPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 573

[Close]

BLAST of MELO3C023297 vs. TrEMBL
Match: I1JAU5_SOYBN (Chloride channel protein OS=Glycine max GN=GLYMA_01G239000 PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.3e-16
Identity = 45/52 (86.54%), Postives = 50/52 (96.15%), Query Frame = 1


Query: 1   MGMCVIMVEISNNLKILPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 53
           + +CVIMVEISNNLK LPLIMLVLL+SKAVGDAFNEG+YEEQAQL+GIPLLE
Sbjct: 524 VSLCVIMVEISNNLKFLPLIMLVLLISKAVGDAFNEGIYEEQAQLRGIPLLE 575

[Close]

BLAST of MELO3C023297 vs. TrEMBL
Match: K7LMC0_SOYBN (Chloride channel protein OS=Glycine max PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.3e-16
Identity = 45/52 (86.54%), Postives = 50/52 (96.15%), Query Frame = 1


Query: 1   MGMCVIMVEISNNLKILPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 53
           + +CVIMVEISNNLK LPLIMLVLL+SKAVGDAFNEG+YEEQAQL+GIPLLE
Sbjct: 546 VSLCVIMVEISNNLKFLPLIMLVLLISKAVGDAFNEGIYEEQAQLRGIPLLE 597

[Close]

BLAST of MELO3C023297 vs. TrEMBL
Match: A0A151TJX1_CAJCA (Chloride channel protein OS=Cajanus cajan GN=KK1_013682 PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.3e-16
Identity = 45/52 (86.54%), Postives = 50/52 (96.15%), Query Frame = 1


Query: 1   MGMCVIMVEISNNLKILPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 53
           + +CVIMVEISNNLK LPLIMLVLL+SKAVGDAFNEG+YEEQAQL+GIPLLE
Sbjct: 465 VSLCVIMVEISNNLKFLPLIMLVLLISKAVGDAFNEGIYEEQAQLRGIPLLE 516

[Close]

BLAST of MELO3C023297 vs. TrEMBL
Match: V7CG91_PHAVU (Chloride channel protein (Fragment) OS=Phaseolus vulgaris GN=PHAVU_002G0470001g PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.3e-16
Identity = 45/52 (86.54%), Postives = 50/52 (96.15%), Query Frame = 1


Query: 1   MGMCVIMVEISNNLKILPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 53
           + +CVIMVEISNNLK LPLIMLVLL+SKAVGDAFNEG+YEEQAQL+GIPLLE
Sbjct: 114 VSLCVIMVEISNNLKFLPLIMLVLLISKAVGDAFNEGIYEEQAQLRGIPLLE 165

[Close]

BLAST of MELO3C023297 vs. TAIR10
Match: AT5G26240.1 (AT5G26240.1 chloride channel D)

HSP 1 Score: 90.1 bits (222), Expect = 4.4e-19
Identity = 44/52 (84.62%), Postives = 48/52 (92.31%), Query Frame = 1


Query: 1   MGMCVIMVEISNNLKILPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 53
           + +CVIMVEI+NNLK+LPLIMLVLL+SKAVGDAFNEGLYE QA+LKGIPLLE
Sbjct: 524 VSLCVIMVEITNNLKLLPLIMLVLLISKAVGDAFNEGLYEVQARLKGIPLLE 575

[Close]

BLAST of MELO3C023297 vs. TAIR10
Match: AT5G49890.1 (AT5G49890.1 chloride channel C)

HSP 1 Score: 65.9 bits (159), Expect = 8.8e-12
Identity = 27/52 (51.92%), Postives = 40/52 (76.92%), Query Frame = 1


Query: 1   MGMCVIMVEISNNLKILPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 53
           + +CVI++E++NNL +LPL+MLVLL+SK V D FN G+Y++   +KG+P +E
Sbjct: 536 VSLCVILLELTNNLLMLPLVMLVLLISKTVADCFNRGVYDQIVTMKGLPYME 587

[Close]

BLAST of MELO3C023297 vs. TAIR10
Match: AT3G27170.1 (AT3G27170.1 chloride channel B)

HSP 1 Score: 61.6 bits (148), Expect = 1.7e-10
Identity = 26/52 (50.00%), Postives = 38/52 (73.08%), Query Frame = 1


Query: 1   MGMCVIMVEISNNLKILPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 53
           + +CVI +E++NNL +LP+ M+VLL++K VGD+FN  +Y+    LKG+P LE
Sbjct: 525 VSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYDIILHLKGLPFLE 576

[Close]

BLAST of MELO3C023297 vs. TAIR10
Match: AT5G40890.1 (AT5G40890.1 chloride channel A)

HSP 1 Score: 61.2 bits (147), Expect = 2.2e-10
Identity = 27/52 (51.92%), Postives = 37/52 (71.15%), Query Frame = 1


Query: 1   MGMCVIMVEISNNLKILPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 53
           + +CVI +E++NNL +LP+ M VLL++K VGD+FN  +YE    LKG+P LE
Sbjct: 526 VSLCVIFLELTNNLLLLPITMFVLLIAKTVGDSFNLSIYEIILHLKGLPFLE 577

[Close]

BLAST of MELO3C023297 vs. TAIR10
Match: AT5G33280.1 (AT5G33280.1 Voltage-gated chloride channel family protein)

HSP 1 Score: 56.6 bits (135), Expect = 5.4e-09
Identity = 25/48 (52.08%), Postives = 34/48 (70.83%), Query Frame = 1


Query: 4   CVIMVEISNNLKILPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLL 52
           CVI++E++NNL +LP++M+VLL+SK V D FN  +Y    +LKG P L
Sbjct: 513 CVILLELTNNLLLLPMMMVVLLISKTVADGFNANIYNLIMKLKGFPYL 560

[Close]

BLAST of MELO3C023297 vs. NCBI nr
Match: gi|700192813|gb|KGN48017.1| (hypothetical protein Csa_6G425060 [Cucumis sativus])

HSP 1 Score: 96.3 bits (238), Expect = 1.7e-17
Identity = 48/52 (92.31%), Postives = 50/52 (96.15%), Query Frame = 1


Query: 1   MGMCVIMVEISNNLKILPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 53
           + +CVIMVEISNNLK LPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE
Sbjct: 522 VSLCVIMVEISNNLKFLPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 573

[Close]

BLAST of MELO3C023297 vs. NCBI nr
Match: gi|778716656|ref|XP_011657577.1| (PREDICTED: chloride channel protein CLC-d [Cucumis sativus])

HSP 1 Score: 96.3 bits (238), Expect = 1.7e-17
Identity = 48/52 (92.31%), Postives = 50/52 (96.15%), Query Frame = 1


Query: 1   MGMCVIMVEISNNLKILPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 53
           + +CVIMVEISNNLK LPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE
Sbjct: 522 VSLCVIMVEISNNLKFLPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 573

[Close]

BLAST of MELO3C023297 vs. NCBI nr
Match: gi|659097321|ref|XP_008449563.1| (PREDICTED: chloride channel protein CLC-d [Cucumis melo])

HSP 1 Score: 96.3 bits (238), Expect = 1.7e-17
Identity = 48/52 (92.31%), Postives = 50/52 (96.15%), Query Frame = 1


Query: 1   MGMCVIMVEISNNLKILPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 53
           + +CVIMVEISNNLK LPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE
Sbjct: 522 VSLCVIMVEISNNLKFLPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 573

[Close]

BLAST of MELO3C023297 vs. NCBI nr
Match: gi|951053453|ref|XP_014520999.1| (PREDICTED: chloride channel protein CLC-d [Vigna radiata var. radiata])

HSP 1 Score: 92.8 bits (229), Expect = 1.9e-16
Identity = 45/52 (86.54%), Postives = 50/52 (96.15%), Query Frame = 1


Query: 1   MGMCVIMVEISNNLKILPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 53
           + +CVIMVEISNNLK LPLIMLVLL+SKAVGDAFNEG+YEEQAQL+GIPLLE
Sbjct: 524 VSLCVIMVEISNNLKFLPLIMLVLLISKAVGDAFNEGIYEEQAQLRGIPLLE 575

[Close]

BLAST of MELO3C023297 vs. NCBI nr
Match: gi|920679696|gb|KOM26585.1| (hypothetical protein LR48_Vigan303s000700 [Vigna angularis])

HSP 1 Score: 92.8 bits (229), Expect = 1.9e-16
Identity = 45/52 (86.54%), Postives = 50/52 (96.15%), Query Frame = 1


Query: 1   MGMCVIMVEISNNLKILPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 53
           + +CVIMVEISNNLK LPLIMLVLL+SKAVGDAFNEG+YEEQAQL+GIPLLE
Sbjct: 499 VSLCVIMVEISNNLKFLPLIMLVLLISKAVGDAFNEGIYEEQAQLRGIPLLE 550

The following BLAST results are available for this feature:

BLAST of MELO3C023297 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CLCD_ARATH	7.8e-18	84.62	Chloride channel protein CLC-d OS=Arabidopsis thaliana GN=CLC-D PE=1 SV=2	[more]
CLCC_ARATH	1.6e-10	51.92	Chloride channel protein CLC-c OS=Arabidopsis thaliana GN=CLC-C PE=1 SV=1	[more]
CLCB_ARATH	3.0e-09	50.00	Chloride channel protein CLC-b OS=Arabidopsis thaliana GN=CLC-B PE=1 SV=1	[more]
CLCA_ARATH	3.9e-09	51.92	Chloride channel protein CLC-a OS=Arabidopsis thaliana GN=CLC-A PE=1 SV=2	[more]
CLCG_ARATH	9.5e-08	52.08	Putative chloride channel-like protein CLC-g OS=Arabidopsis thaliana GN=CBSCLC6 ...	[more]

BLAST of MELO3C023297 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KI42_CUCSA	1.2e-17	92.31	Chloride channel protein OS=Cucumis sativus GN=Csa_6G425060 PE=3 SV=1	[more]
I1JAU5_SOYBN	1.3e-16	86.54	Chloride channel protein OS=Glycine max GN=GLYMA_01G239000 PE=3 SV=1	[more]
K7LMC0_SOYBN	1.3e-16	86.54	Chloride channel protein OS=Glycine max PE=3 SV=1	[more]
A0A151TJX1_CAJCA	1.3e-16	86.54	Chloride channel protein OS=Cajanus cajan GN=KK1_013682 PE=3 SV=1	[more]
V7CG91_PHAVU	1.3e-16	86.54	Chloride channel protein (Fragment) OS=Phaseolus vulgaris GN=PHAVU_002G0470001g ...	[more]

BLAST of MELO3C023297 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G26240.1	4.4e-19	84.62	chloride channel D	[more]
AT5G49890.1	8.8e-12	51.92	chloride channel C	[more]
AT3G27170.1	1.7e-10	50.00	chloride channel B	[more]
AT5G40890.1	2.2e-10	51.92	chloride channel A	[more]
AT5G33280.1	5.4e-09	52.08	Voltage-gated chloride channel family protein	[more]

BLAST of MELO3C023297 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700192813\|gb\|KGN48017.1\|	1.7e-17	92.31	hypothetical protein Csa_6G425060 [Cucumis sativus]	[more]
gi\|778716656\|ref\|XP_011657577.1\|	1.7e-17	92.31	PREDICTED: chloride channel protein CLC-d [Cucumis sativus]	[more]
gi\|659097321\|ref\|XP_008449563.1\|	1.7e-17	92.31	PREDICTED: chloride channel protein CLC-d [Cucumis melo]	[more]
gi\|951053453\|ref\|XP_014520999.1\|	1.9e-16	86.54	PREDICTED: chloride channel protein CLC-d [Vigna radiata var. radiata]	[more]
gi\|920679696\|gb\|KOM26585.1\|	1.9e-16	86.54	hypothetical protein LR48_Vigan303s000700 [Vigna angularis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR014743	Cl-channel_core

Vocabulary: **Molecular Function**
Term	Definition
GO:0005216	ion channel activity

Vocabulary: **Biological Process**
Term	Definition
GO:0055085	transmembrane transport

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006821	chloride transport
biological_process	GO:1903959	regulation of anion transmembrane transport
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005247	voltage-gated chloride channel activity
molecular_function	GO:0005216	ion channel activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C023297T1	MELO3C023297T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014743	Chloride channel, core	GENE3D	G3DSA:1.10.3080.10		coord: 3..52 score: 2.2
IPR014743	Chloride channel, core	unknown	SSF81340	Clc chloride channel	coord: 2..51 score: 1.4
None	No IPR available	PANTHER	PTHR11689	CHLORIDE CHANNEL	coord: 3..52 score: 2.6
None	No IPR available	PANTHER	PTHR11689:SF92	H(+)/CL(-) EXCHANGE TRANSPORTER 7	coord: 3..52 score: 2.6

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C023297	Cucurbita pepo (Zucchini)	cpemeB656
MELO3C023297	Bottle gourd (USVL1VR-Ls)	lsimeB045
MELO3C023297	Cucumber (Gy14) v2	cgybmeB078
MELO3C023297	Cucumber (Gy14) v2	cgybmeB451
MELO3C023297	Silver-seed gourd	carmeB0320
MELO3C023297	Silver-seed gourd	carmeB0475
MELO3C023297	Silver-seed gourd	carmeB0878
MELO3C023297	Cucumber (Chinese Long) v3	cucmeB097
MELO3C023297	Cucumber (Chinese Long) v3	cucmeB273
MELO3C023297	Cucumber (Chinese Long) v3	cucmeB530
MELO3C023297	Watermelon (97103) v2	mewmbB089
MELO3C023297	Watermelon (97103) v2	mewmbB113
MELO3C023297	Wax gourd	mewgoB111
MELO3C023297	Wax gourd	mewgoB130
MELO3C023297	Melon (DHL92) v3.5.1	memeB042
MELO3C023297	Cucumber (Gy14) v1	cgymeB148
MELO3C023297	Cucumber (Gy14) v1	cgymeB611
MELO3C023297	Cucurbita maxima (Rimu)	cmameB503
MELO3C023297	Cucurbita maxima (Rimu)	cmameB549
MELO3C023297	Cucurbita moschata (Rifu)	cmomeB538
MELO3C023297	Cucurbita moschata (Rifu)	cmomeB495
MELO3C023297	Wild cucumber (PI 183967)	cpimeB090
MELO3C023297	Wild cucumber (PI 183967)	cpimeB267
MELO3C023297	Cucumber (Chinese Long) v2	cumeB092
MELO3C023297	Watermelon (Charleston Gray)	mewcgB081
MELO3C023297	Watermelon (Charleston Gray)	mewcgB111
MELO3C023297	Watermelon (Charleston Gray)	mewcgB125
MELO3C023297	Watermelon (97103) v1	mewmB129
MELO3C023297	Watermelon (97103) v1	mewmB134
MELO3C023297	Cucurbita pepo (Zucchini)	cpemeB210
MELO3C023297	Cucurbita pepo (Zucchini)	cpemeB248
MELO3C023297	Bottle gourd (USVL1VR-Ls)	lsimeB086