MELO3C023237 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C023237
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionMyb domain protein 105, putative
Locationchr11 : 456359 .. 456529 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCACGGCCGTCAAATGGACTCCTCTGACAGCTGGGGCTCCGGTGCTGCTCGGAAATGGTCGTGGAAAGTCGTCTTTGACAGCCGTAGTGGCGTCGGGATCCGGTGAGGGTGAGGATCACAAGAGGAGGATTCCATTCATAGACTTTCTTGGTATGGGAAGCTCTTAG

mRNA sequence

ATGACCACGGCCGTCAAATGGACTCCTCTGACAGCTGGGGCTCCGGTGCTGCTCGGAAATGGTCGTGGAAAGTCGTCTTTGACAGCCGTAGTGGCGTCGGGATCCGGTGAGGGTGAGGATCACAAGAGGAGGATTCCATTCATAGACTTTCTTGGTATGGGAAGCTCTTAG

Coding sequence (CDS)

ATGACCACGGCCGTCAAATGGACTCCTCTGACAGCTGGGGCTCCGGTGCTGCTCGGAAATGGTCGTGGAAAGTCGTCTTTGACAGCCGTAGTGGCGTCGGGATCCGGTGAGGGTGAGGATCACAAGAGGAGGATTCCATTCATAGACTTTCTTGGTATGGGAAGCTCTTAG

Protein sequence

MTTAVKWTPLTAGAPVLLGNGRGKSSLTAVVASGSGEGEDHKRRIPFIDFLGMGSS*
Homology
[Close]
BLAST of MELO3C023237 vs. TrEMBL
Match: A0A0A0LM98_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G302300 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.9e-21
Identity = 53/55 (96.36%), Postives = 53/55 (96.36%), Query Frame = 1 

Query: 2   TTAVKWTPLTAGAPVLLGNGRGKSSLTAVVASGSGEGEDHKRRIPFIDFLGMGSS 57
           T AVKWTPLTAGAPVLLGNGRGKSSL AVVASGSGEGEDHKRRIPFIDFLGMGSS
Sbjct: 156 TAAVKWTPLTAGAPVLLGNGRGKSSLPAVVASGSGEGEDHKRRIPFIDFLGMGSS 210

[Close]
BLAST of MELO3C023237 vs. NCBI nr
Match: gi|659121938|ref|XP_008460890.1| (PREDICTED: transcriptional activator Myb [Cucumis melo])

HSP 1 Score: 115.2 bits (287), Expect = 3.9e-23
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 1 

Query: 1   MTTAVKWTPLTAGAPVLLGNGRGKSSLTAVVASGSGEGEDHKRRIPFIDFLGMGSS 57
           MTTAVKWTPLTAGAPVLLGNGRGKSSLTAVVASGSGEGEDHKRRIPFIDFLGMGSS
Sbjct: 155 MTTAVKWTPLTAGAPVLLGNGRGKSSLTAVVASGSGEGEDHKRRIPFIDFLGMGSS 210

[Close]
BLAST of MELO3C023237 vs. NCBI nr
Match: gi|449459264|ref|XP_004147366.1| (PREDICTED: transcriptional activator Myb [Cucumis sativus])

HSP 1 Score: 109.0 bits (271), Expect = 2.8e-21
Identity = 53/55 (96.36%), Postives = 53/55 (96.36%), Query Frame = 1 

Query: 2   TTAVKWTPLTAGAPVLLGNGRGKSSLTAVVASGSGEGEDHKRRIPFIDFLGMGSS 57
           T AVKWTPLTAGAPVLLGNGRGKSSL AVVASGSGEGEDHKRRIPFIDFLGMGSS
Sbjct: 156 TAAVKWTPLTAGAPVLLGNGRGKSSLPAVVASGSGEGEDHKRRIPFIDFLGMGSS 210

The following BLAST results are available for this feature:
BLAST of MELO3C023237 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LM98_CUCSA1.9e-2196.36Uncharacterized protein OS=Cucumis sativus GN=Csa_2G302300 PE=4 SV=1[more]
BLAST of MELO3C023237 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659121938|ref|XP_008460890.1|3.9e-23100.00PREDICTED: transcriptional activator Myb [Cucumis melo][more]
gi|449459264|ref|XP_004147366.1|2.8e-2196.36PREDICTED: transcriptional activator Myb [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0006357 regulation of transcription from RNA polymerase II promoter
biological_process GO:0030154 cell differentiation
biological_process GO:2000652 regulation of secondary cell wall biogenesis
biological_process GO:0045893 positive regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0005575 cellular_component
cellular_component GO:0000785 chromatin
cellular_component GO:0009536 plastid
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0003682 chromatin binding
molecular_function GO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0001135 transcription factor activity, RNA polymerase II transcription factor recruiting
molecular_function GO:0044212 transcription regulatory region DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C023237T1MELO3C023237T1mRNA