MELO3C023177 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C023177
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Putative nuclease HARBI1
Location	chr8 : 16469716 .. 16469883 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACATATTGCGATGACGTTGAGGACGAGGACGAGGGGGACTCCACGTACGCGACGACCACCGCTTCAGAAGACATTCAGTACATTGAGACAACAAACGAGTGGTCTCAGTGGCGCGACGACCTAGCCGAATCGATGTTCACTGAATGGCAGTTGCGTAACGCTTAG

mRNA sequence

ATGACATATTGCGATGACGTTGAGGACGAGGACGAGGGGGACTCCACGTACGCGACGACCACCGCTTCAGAAGACATTCAGTACATTGAGACAACAAACGAGTGGTCTCAGTGGCGCGACGACCTAGCCGAATCGATGTTCACTGAATGGCAGTTGCGTAACGCTTAG

Coding sequence (CDS)

ATGACATATTGCGATGACGTTGAGGACGAGGACGAGGGGGACTCCACGTACGCGACGACCACCGCTTCAGAAGACATTCAGTACATTGAGACAACAAACGAGTGGTCTCAGTGGCGCGACGACCTAGCCGAATCGATGTTCACTGAATGGCAGTTGCGTAACGCTTAG

Protein sequence

MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA*

Homology

[Close]

BLAST of MELO3C023177 vs. TrEMBL
Match: E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 8.5e-22
Identity = 49/53 (92.45%), Postives = 51/53 (96.23%), Query Frame = 1


Query: 1   MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLR 54
           MTYC+DVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLA SMFT+WQ R
Sbjct: 283 MTYCNDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLATSMFTDWQFR 335

[Close]

BLAST of MELO3C023177 vs. TrEMBL
Match: E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 4.5e-07
Identity = 30/44 (68.18%), Postives = 37/44 (84.09%), Query Frame = 1


Query: 6   DVEDE-DEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFT 49
           D+ED  DE DST+ATT A++DI YIET+NEWSQWRD+LAE + T
Sbjct: 315 DIEDNIDEVDSTHATT-AADDIHYIETSNEWSQWRDNLAEEIMT 357

[Close]

BLAST of MELO3C023177 vs. TrEMBL
Match: A0A0A0M0G4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G690220 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 3.8e-06
Identity = 27/48 (56.25%), Postives = 34/48 (70.83%), Query Frame = 1


Query: 7  VEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRN 55
          ++D DE D  YATT  + +I Y E +N+WSQWRDDL E+MF  WQL N
Sbjct: 20 LKDVDEVDLNYATTEGN-NINYNEASNKWSQWRDDLVEAMFNGWQLCN 66

[Close]

BLAST of MELO3C023177 vs. NCBI nr
Match: gi|307135889|gb|ADN33754.1| (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 110.2 bits (274), Expect = 1.2e-21
Identity = 49/53 (92.45%), Postives = 51/53 (96.23%), Query Frame = 1


Query: 1   MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLR 54
           MTYC+DVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLA SMFT+WQ R
Sbjct: 283 MTYCNDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLATSMFTDWQFR 335

[Close]

BLAST of MELO3C023177 vs. NCBI nr
Match: gi|659099182|ref|XP_008450472.1| (PREDICTED: uncharacterized protein LOC103492066 [Cucumis melo])

HSP 1 Score: 99.4 bits (246), Expect = 2.2e-18
Identity = 44/55 (80.00%), Postives = 47/55 (85.45%), Query Frame = 1


Query: 1   MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA 56
           MTYCDDV+D DEGD  YATTT  E+I YIE TNEWSQWRD LAESMFT+WQLRNA
Sbjct: 142 MTYCDDVDDVDEGDFAYATTTTIEEIHYIEMTNEWSQWRDKLAESMFTDWQLRNA 196

[Close]

BLAST of MELO3C023177 vs. NCBI nr
Match: gi|659086609|ref|XP_008444024.1| (PREDICTED: uncharacterized protein LOC103487473 [Cucumis melo])

HSP 1 Score: 81.3 bits (199), Expect = 6.1e-13
Identity = 35/54 (64.81%), Postives = 47/54 (87.04%), Query Frame = 1


Query: 1   MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRN 55
           +TY ++++DED+GDST+ATT+  +DI YIE +NEW++WRD LA SMFTEWQLRN
Sbjct: 241 ITYINELDDEDDGDSTHATTSG-DDITYIEPSNEWTEWRDALASSMFTEWQLRN 293

[Close]

BLAST of MELO3C023177 vs. NCBI nr
Match: gi|659121362|ref|XP_008460622.1| (PREDICTED: uncharacterized protein LOC103499399 [Cucumis melo])

HSP 1 Score: 78.6 bits (192), Expect = 3.9e-12
Identity = 37/50 (74.00%), Postives = 44/50 (88.00%), Query Frame = 1


Query: 6   DVEDE-DEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRN 55
           D+ED  DE DST+ATT A++DI YIET+NEWSQWRDDLAE MFT+W+LRN
Sbjct: 154 DIEDNIDEVDSTHATT-AADDIHYIETSNEWSQWRDDLAEEMFTDWELRN 202

[Close]

BLAST of MELO3C023177 vs. NCBI nr
Match: gi|659125597|ref|XP_008462767.1| (PREDICTED: uncharacterized protein LOC103501052 [Cucumis melo])

HSP 1 Score: 77.0 bits (188), Expect = 1.1e-11
Identity = 33/53 (62.26%), Postives = 44/53 (83.02%), Query Frame = 1


Query: 1   MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLR 54
           MT  +D+ D +E DS YATTT  ++IQYIETTNEW+QW+D+L+++MF EWQLR
Sbjct: 107 MTNGEDLYDINEEDSAYATTTTGDNIQYIETTNEWTQWQDELSKAMFIEWQLR 159

The following BLAST results are available for this feature:

BLAST of MELO3C023177 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GBB2_CUCME	8.5e-22	92.45	Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GCB5_CUCME	4.5e-07	68.18	Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A0A0M0G4_CUCSA	3.8e-06	56.25	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G690220 PE=4 SV=1	[more]

BLAST of MELO3C023177 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|307135889\|gb\|ADN33754.1\|	1.2e-21	92.45	retrotransposon protein [Cucumis melo subsp. melo]	[more]
gi\|659099182\|ref\|XP_008450472.1\|	2.2e-18	80.00	PREDICTED: uncharacterized protein LOC103492066 [Cucumis melo]	[more]
gi\|659086609\|ref\|XP_008444024.1\|	6.1e-13	64.81	PREDICTED: uncharacterized protein LOC103487473 [Cucumis melo]	[more]
gi\|659121362\|ref\|XP_008460622.1\|	3.9e-12	74.00	PREDICTED: uncharacterized protein LOC103499399 [Cucumis melo]	[more]
gi\|659125597\|ref\|XP_008462767.1\|	1.1e-11	62.26	PREDICTED: uncharacterized protein LOC103501052 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C023177T1	MELO3C023177T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C023177	Silver-seed gourd	carmeB0195
MELO3C023177	Silver-seed gourd	carmeB0288
MELO3C023177	Cucumber (Chinese Long) v3	cucmeB338
MELO3C023177	Watermelon (97103) v2	mewmbB534
MELO3C023177	Wax gourd	mewgoB642
MELO3C023177	Wax gourd	mewgoB658
MELO3C023177	Cucumber (Gy14) v1	cgymeB011
MELO3C023177	Cucurbita maxima (Rimu)	cmameB613
MELO3C023177	Cucurbita maxima (Rimu)	cmameB808
MELO3C023177	Cucurbita maxima (Rimu)	cmameB810
MELO3C023177	Cucurbita moschata (Rifu)	cmomeB601
MELO3C023177	Cucurbita moschata (Rifu)	cmomeB792
MELO3C023177	Cucurbita moschata (Rifu)	cmomeB794
MELO3C023177	Wild cucumber (PI 183967)	cpimeB332
MELO3C023177	Cucumber (Chinese Long) v2	cumeB331
MELO3C023177	Watermelon (Charleston Gray)	mewcgB526
MELO3C023177	Watermelon (97103) v1	mewmB588
MELO3C023177	Cucurbita pepo (Zucchini)	cpemeB072
MELO3C023177	Cucurbita pepo (Zucchini)	cpemeB451
MELO3C023177	Bottle gourd (USVL1VR-Ls)	lsimeB152
MELO3C023177	Cucumber (Gy14) v2	cgybmeB287