MELO3C023144.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C023144.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionDTW domain-containing protein 2-like
Locationchr08 : 17364330 .. 17365609 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATAAACAAATCTAAAAAATCTAAGGATAATATAATAAGAATACCAAATCTAGCCAATGCTAGACGTAGAGGTATTTTTTATTGCAAGGTGGAATTTTTTTGTTTTCTGTGTTATACTTTTGAAAACACCTCAAATATTAACTATATTTTCTCTTTTTTTTTTTGAAAATTTCGGTTTAAAAAAAATGAACCCAACCGTCGAACACCGTAAGGTAAGATGCTATCATGCCTTACCCTAAAACGAAAGTCGAGGAAGCAACACATCAAAACGGTATCGTTTTCTCCAGAGGCATGGAGTCAACAAACAACCACAACTTCGCCGCCGGATATTCCTCGTCGTCCCCGCCACCTCGGCGGCCAATTTGCCCTAATTGCAACCGTCCCCAACCAGTCTGCCTCTGCAAATTCCTTCCATCTTCACCAATCGCAACAAAATTCTTAAAATCATCATACTACAACATCCTCACGAATCACAACACAAGCTCTCCACTACACCAATCCTCACGAAATGCCTCCTCAACGCAACAACCATCGTCAATCGCCGCCTCAAGCCCGGTCTCTCCAAACTCCTCGACCAATCCCCTCCCGCAGTCTTCCTTTTCCCGCCTACACCTCACTCCTCGCCGCCGATCAACATCTCGGATCTCAACATAACTGAAGATCTGGTCCTGATAGCGTTCGACGGAACGTGGAAGCACGCGAAGGAGATGGTGCGATCGAGCGAGGAGTTTCTGTCAAGGTTTGCGAGGAGAGTTTGTTTGGACATCGATGAGAGTGTTGAAGGCGGAAGCATATTTGATTCGGAGTTGATTCTGAGGAAGGAACCGCACGGCGGATGTGTTAGTACGATGGAGGCTGTGGCGAGGTGTTTGAGAGTGATGGAGTTGGATGGGGCGGCGGTTGAGGAAAAATTGATTGGGGTCTTGAGGGAAATGGTTAGGTTACAAGCTGGGTTTTTGAAGCCCATGAACCCTAGGCCCAAATTGCTTAAGAATTTTAAGCAGAAAACGAGTGTGATGGAGGATGAAAATTAAAAAGGATTTTTGAAATTTTGTTCTCTTTATTTCAATTACAATTTTGTATCTATTTTTTTTTTTCTTCCTATTTTACCCATAAAAAATATTTCAGTTTGGTTTTTACTTCTTATTTATACAAGGAATGTTTGGTAACGTGTGTAATGTGTTGAGTTTGTAATGTAATGTAATAAAAAGTTCATATTTGGATCGTGAACATTTTGAGTTCAATTTGTAATAATAACTCAACCCTTCGTCGTTTTTGCC

mRNA sequence

AATAAACAAATCTAAAAAATCTAAGGATAATATAATAAGAATACCAAATCTAGCCAATGCTAGACGTAGAGGTATTTTTTATTGCAAGGTGGAATTTTTTTGTTTTCTGTGTTATACTTTTGAAAACACCTCAAATATTAACTATATTTTCTCTTTTTTTTTTTGAAAATTTCGGTTTAAAAAAAATGAACCCAACCGTCGAACACCGTAAGGTAAGATGCTATCATGCCTTACCCTAAAACGAAAGTCGAGGAAGCAACACATCAAAACGGTATCGTTTTCTCCAGAGGCATGGAGTCAACAAACAACCACAACTTCGCCGCCGGATATTCCTCGTCGTCCCCGCCACCTCGGCGGCCAATTTGCCCTAATTGCAACCGTCCCCAACCAGTCTGCCTCTGCAAATTCCTTCCATCTTCACCAATCGCAACAAAATTCTTAAAATCATCATACTACAACATCCTCACGAATCACAACACAAGCTCTCCACTACACCAATCCTCACGAAATGCCTCCTCAACGCAACAACCATCGTCAATCGCCGCCTCAAGCCCGGTCTCTCCAAACTCCTCGACCAATCCCCTCCCGCAGTCTTCCTTTTCCCGCCTACACCTCACTCCTCGCCGCCGATCAACATCTCGGATCTCAACATAACTGAAGATCTGGTCCTGATAGCGTTCGACGGAACGTGGAAGCACGCGAAGGAGATGGTGCGATCGAGCGAGGAGTTTCTGTCAAGGTTTGCGAGGAGAGTTTGTTTGGACATCGATGAGAGTGTTGAAGGCGGAAGCATATTTGATTCGGAGTTGATTCTGAGGAAGGAACCGCACGGCGGATGTGTTAGTACGATGGAGGCTGTGGCGAGGTGTTTGAGAGTGATGGAGTTGGATGGGGCGGCGGTTGAGGAAAAATTGATTGGGGTCTTGAGGGAAATGGTTAGGTTACAAGCTGGGTTTTTGAAGCCCATGAACCCTAGGCCCAAATTGCTTAAGAATTTTAAGCAGAAAACGAGTGTGATGGAGGATGAAAATTAAAAAGGATTTTTGAAATTTTGTTCTCTTTATTTCAATTACAATTTTGTATCTATTTTTTTTTTTCTTCCTATTTTACCCATAAAAAATATTTCAGTTTGGTTTTTACTTCTTATTTATACAAGGAATGTTTGGTAACGTGTGTAATGTGTTGAGTTTGTAATGTAATGTAATAAAAAGTTCATATTTGGATCGTGAACATTTTGAGTTCAATTTGTAATAATAACTCAACCCTTCGTCGTTTTTGCC

Coding sequence (CDS)

ATGCCTTACCCTAAAACGAAAGTCGAGGAAGCAACACATCAAAACGGTATCGTTTTCTCCAGAGGCATGGAGTCAACAAACAACCACAACTTCGCCGCCGGATATTCCTCGTCGTCCCCGCCACCTCGGCGGCCAATTTGCCCTAATTGCAACCGTCCCCAACCAGTCTGCCTCTGCAAATTCCTTCCATCTTCACCAATCGCAACAAAATTCTTAAAATCATCATACTACAACATCCTCACGAATCACAACACAAGCTCTCCACTACACCAATCCTCACGAAATGCCTCCTCAACGCAACAACCATCGTCAATCGCCGCCTCAAGCCCGGTCTCTCCAAACTCCTCGACCAATCCCCTCCCGCAGTCTTCCTTTTCCCGCCTACACCTCACTCCTCGCCGCCGATCAACATCTCGGATCTCAACATAA

Protein sequence

MPYPKTKVEEATHQNGIVFSRGMESTNNHNFAAGYSSSSPPPRRPICPNCNRPQPVCLCKFLPSSPIATKFLKSSYYNILTNHNTSSPLHQSSRNASSTQQPSSIAASSPVSPNSSTNPLPQSSFSRLHLTPRRRSTSRIST
Homology
[Close]
BLAST of MELO3C023144.2 vs. NCBI nr
Match: XP_004149400.1 (PREDICTED: DTW domain-containing protein 2 [Cucumis sativus] >KGN53840.1 hypothetical protein Csa_4G165850 [Cucumis sativus])

HSP 1 Score: 83.6 bits (205), Expect = 6.0e-13
Identity = 38/48 (79.17%), Postives = 39/48 (81.25%), Query Frame = 0 

Query: 23 MESTNNHNFAAGYSSXXXXPRRPICPNCNRPQPVCLCKFLPSSPIATK 71
          MES NNH+ AAGYSS    PRR IC NCNRPQPVCLCKFLPS PIATK
Sbjct: 1  MESRNNHDLAAGYSSSSTPPRRSICSNCNRPQPVCLCKFLPSPPIATK 48

[Close]
BLAST of MELO3C023144.2 vs. NCBI nr
Match: XP_022928716.1 (DTW domain-containing protein 2 [Cucurbita moschata])

HSP 1 Score: 56.2 bits (134), Expect = 1.0e-04
Identity = 23/25 (92.00%), Postives = 23/25 (92.00%), Query Frame = 0 

Query: 46 ICPNCNRPQPVCLCKFLPSSPIATK 71
          ICPNC RPQPVCLCKFLPS PIATK
Sbjct: 21 ICPNCTRPQPVCLCKFLPSPPIATK 45

[Close]
BLAST of MELO3C023144.2 vs. NCBI nr
Match: XP_023544253.1 (DTW domain-containing protein 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 56.2 bits (134), Expect = 1.0e-04
Identity = 23/25 (92.00%), Postives = 23/25 (92.00%), Query Frame = 0 

Query: 46 ICPNCNRPQPVCLCKFLPSSPIATK 71
          ICPNC RPQPVCLCKFLPS PIATK
Sbjct: 27 ICPNCTRPQPVCLCKFLPSPPIATK 51

[Close]
BLAST of MELO3C023144.2 vs. NCBI nr
Match: XP_015898156.1 (DTW domain-containing protein 2 [Ziziphus jujuba])

HSP 1 Score: 54.3 bits (129), Expect = 3.9e-04
Identity = 24/43 (55.81%), Postives = 29/43 (67.44%), Query Frame = 0 

Query: 28 NHNFAAGYSSXXXXPRRPICPNCNRPQPVCLCKFLPSSPIATK 71
          +H   +G SS    PRR IC NC+RP PVCLC+ LP+ PI TK
Sbjct: 7  DHLDVSGTSSSSPPPRRTICGNCSRPSPVCLCESLPAQPIPTK 49

[Close]
BLAST of MELO3C023144.2 vs. NCBI nr
Match: XP_022152239.1 (DTW domain-containing protein 2 [Momordica charantia])

HSP 1 Score: 54.3 bits (129), Expect = 3.9e-04
Identity = 21/25 (84.00%), Postives = 24/25 (96.00%), Query Frame = 0 

Query: 46 ICPNCNRPQPVCLCKFLPSSPIATK 71
          ICPNC+RP+PVCLCKFLPS PIAT+
Sbjct: 34 ICPNCSRPEPVCLCKFLPSPPIATR 58

[Close]
BLAST of MELO3C023144.2 vs. TrEMBL
Match: tr|A0A0A0KW36|A0A0A0KW36_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G165850 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 4.0e-13
Identity = 38/48 (79.17%), Postives = 39/48 (81.25%), Query Frame = 0 

Query: 23 MESTNNHNFAAGYSSXXXXPRRPICPNCNRPQPVCLCKFLPSSPIATK 71
          MES NNH+ AAGYSS    PRR IC NCNRPQPVCLCKFLPS PIATK
Sbjct: 1  MESRNNHDLAAGYSSSSTPPRRSICSNCNRPQPVCLCKFLPSPPIATK 48

[Close]
BLAST of MELO3C023144.2 vs. TrEMBL
Match: tr|A0A2N9F2X1|A0A2N9F2X1_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS9365 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 6.8e-05
Identity = 24/49 (48.98%), Postives = 33/49 (67.35%), Query Frame = 0 

Query: 22 GMESTNNHNFAAGYSSXXXXPRRPICPNCNRPQPVCLCKFLPSSPIATK 71
          G E++ NH  ++  ++     RRPIC NC+RP PVCLC+ LP+ PI TK
Sbjct: 4  GKENSTNHLSSSTTTAEPEPARRPICSNCSRPNPVCLCETLPAQPIPTK 52

[Close]
BLAST of MELO3C023144.2 vs. TrEMBL
Match: tr|A0A2N9EU88|A0A2N9EU88_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS10228 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 6.8e-05
Identity = 24/49 (48.98%), Postives = 33/49 (67.35%), Query Frame = 0 

Query: 22 GMESTNNHNFAAGYSSXXXXPRRPICPNCNRPQPVCLCKFLPSSPIATK 71
          G E++ NH  ++  ++     RRPIC NC+RP PVCLC+ LP+ PI TK
Sbjct: 4  GKENSTNHLSSSTTTAEPEPARRPICSNCSRPNPVCLCETLPAQPIPTK 52

[Close]
BLAST of MELO3C023144.2 vs. TrEMBL
Match: tr|A0A2P5EMZ4|A0A2P5EMZ4_9ROSA (DTW OS=Trema orientalis OX=63057 GN=TorRG33x02_172870 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 5.8e-04
Identity = 24/42 (57.14%), Postives = 27/42 (64.29%), Query Frame = 0 

Query: 28 NHNFAAGYSSXXXXPRRPICPNCNRPQPVCLCKFLPSSPIAT 70
          NH   +  +S    PRRPICPNC RP PVCLC  LP+ PI T
Sbjct: 7  NHLGFSFSTSTSAPPRRPICPNCARPSPVCLCHTLPAQPIPT 48

[Close]
BLAST of MELO3C023144.2 vs. TrEMBL
Match: tr|A0A2P5AQN6|A0A2P5AQN6_PARAD (DTW OS=Parasponia andersonii OX=3476 GN=PanWU01x14_309490 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 9.9e-04
Identity = 21/28 (75.00%), Postives = 22/28 (78.57%), Query Frame = 0 

Query: 42 PRRPICPNCNRPQPVCLCKFLPSSPIAT 70
          PRRPICPNC RP PVCLC  LP+ PI T
Sbjct: 21 PRRPICPNCARPSPVCLCHTLPAQPIPT 48

The following BLAST results are available for this feature:
BLAST of MELO3C023144.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004149400.16.0e-1379.17PREDICTED: DTW domain-containing protein 2 [Cucumis sativus] >KGN53840.1 hypothe... [more]
XP_022928716.11.0e-0492.00DTW domain-containing protein 2 [Cucurbita moschata][more]
XP_023544253.11.0e-0492.00DTW domain-containing protein 2 [Cucurbita pepo subsp. pepo][more]
XP_015898156.13.9e-0455.81DTW domain-containing protein 2 [Ziziphus jujuba][more]
XP_022152239.13.9e-0484.00DTW domain-containing protein 2 [Momordica charantia][more]
BLAST of MELO3C023144.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C023144.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C023144.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KW36|A0A0A0KW36_CUCSA4.0e-1379.17Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G165850 PE=4 SV=1[more]
tr|A0A2N9F2X1|A0A2N9F2X1_FAGSY6.8e-0548.98Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS9365 PE=4 SV=1[more]
tr|A0A2N9EU88|A0A2N9EU88_FAGSY6.8e-0548.98Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS10228 PE=4 SV=1[more]
tr|A0A2P5EMZ4|A0A2P5EMZ4_9ROSA5.8e-0457.14DTW OS=Trema orientalis OX=63057 GN=TorRG33x02_172870 PE=4 SV=1[more]
tr|A0A2P5AQN6|A0A2P5AQN6_PARAD9.9e-0475.00DTW OS=Parasponia andersonii OX=3476 GN=PanWU01x14_309490 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C023144.2.1MELO3C023144.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 82..142

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C023144.2Csa4G165850Cucumber (Chinese Long) v2cumedB313
MELO3C023144.2CSPI04G10560Wild cucumber (PI 183967)cpimedB315
MELO3C023144.2Cucsa.374670Cucumber (Gy14) v1cgymedB605
MELO3C023144.2CsGy4G010200Cucumber (Gy14) v2cgybmedB281
MELO3C023144.2Carg22449Silver-seed gourdcarmedB0199
MELO3C023144.2CsaV3_4G011670Cucumber (Chinese Long) v3cucmedB322
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C023144.2Watermelon (Charleston Gray)medwcgB530
MELO3C023144.2Watermelon (97103) v1medwmB568
MELO3C023144.2Silver-seed gourdcarmedB0200
MELO3C023144.2Silver-seed gourdcarmedB0299
MELO3C023144.2Watermelon (97103) v2medwmbB535
MELO3C023144.2Wax gourdmedwgoB649
MELO3C023144.2Cucurbita maxima (Rimu)cmamedB701
MELO3C023144.2Cucurbita maxima (Rimu)cmamedB708
MELO3C023144.2Cucurbita maxima (Rimu)cmamedB908
MELO3C023144.2Cucurbita moschata (Rifu)cmomedB691
MELO3C023144.2Cucurbita moschata (Rifu)cmomedB699
MELO3C023144.2Cucurbita moschata (Rifu)cmomedB898
MELO3C023144.2Cucurbita pepo (Zucchini)cpemedB094
MELO3C023144.2Cucurbita pepo (Zucchini)cpemedB085
MELO3C023144.2Cucurbita pepo (Zucchini)cpemedB534
MELO3C023144.2Bottle gourd (USVL1VR-Ls)lsimedB166